-
1
-
-
2442562450
-
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution
-
Arvestad, L., Berglung, A.-C., Lagergren, J., Sennblad, B.: Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. In: RECOMB 2004, pp. 326-335 (2004)
-
(2004)
RECOMB 2004
, pp. 326-335
-
-
Arvestad, L.1
Berglung, A.-C.2
Lagergren, J.3
Sennblad, B.4
-
2
-
-
36248935185
-
-
Blin, G., Chauve, C., Fertin, G., Rizzi, R., Vialette, S.: Comparing genomes with duplications: a computational complexity point of view. IEEE/ACM Trans. on Comput. Biol. and Bioinformatics (to appear, 2007)
-
Blin, G., Chauve, C., Fertin, G., Rizzi, R., Vialette, S.: Comparing genomes with duplications: a computational complexity point of view. IEEE/ACM Trans. on Comput. Biol. and Bioinformatics (to appear, 2007)
-
-
-
-
3
-
-
0033692378
-
NOTUNG: A program for dating gene duplications and optimizing gene family trees
-
Chen, K., Durand, D., Farach-Colton, M.: NOTUNG: a program for dating gene duplications and optimizing gene family trees. J. Comput. Biol. 7(3-4), 429-444 (2000)
-
(2000)
J. Comput. Biol
, vol.7
, Issue.3-4
, pp. 429-444
-
-
Chen, K.1
Durand, D.2
Farach-Colton, M.3
-
4
-
-
0037036630
-
Going nuclear: Gene family evolution and vertebrate phylogeny reconcilied
-
Cotton, J.A., Page, R.D.M.: Going nuclear: gene family evolution and vertebrate phylogeny reconcilied. Proc. R. Soc. Lond. B 269, 1555-1561 (2002)
-
(2002)
Proc. R. Soc. Lond. B
, vol.269
, pp. 1555-1561
-
-
Cotton, J.A.1
Page, R.D.M.2
-
5
-
-
33645981936
-
A hybrid micro-macroevolutionary approach to gene tree reconstruction
-
Durand, D., Haldórsson, B.V., Vernot, D.: A hybrid micro-macroevolutionary approach to gene tree reconstruction. J. Comput. Biol. 13(2), 320-3354 (2006)
-
(2006)
J. Comput. Biol
, vol.13
, Issue.2
, pp. 320-3354
-
-
Durand, D.1
Haldórsson, B.V.2
Vernot, D.3
-
6
-
-
0042027896
-
Structural dynamics of eukaryotic chromosome evolution
-
Eichler, E.E., Sankoff, D.: Structural dynamics of eukaryotic chromosome evolution. Science 301(5634), 793-797 (2003)
-
(2003)
Science
, vol.301
, Issue.5634
, pp. 793-797
-
-
Eichler, E.E.1
Sankoff, D.2
-
7
-
-
38349063516
-
-
Eulenstein, O., Mirkin, B., Vingron, M.: Comparison of annotating duplication, tree mapping, and copying as methods to compare gene trees with species trees. Mathematical hierarchies and biology, DIMACS Ser. Discrete Math. Theoret. Comput. Sci., Amer. Math. Soc., 37, 71-93 (1997)
-
Eulenstein, O., Mirkin, B., Vingron, M.: Comparison of annotating duplication, tree mapping, and copying as methods to compare gene trees with species trees. Mathematical hierarchies and biology, DIMACS Ser. Discrete Math. Theoret. Comput. Sci., Amer. Math. Soc., 37, 71-93 (1997)
-
-
-
-
8
-
-
30744460614
-
Rate asymmetry after genome duplication causes substantial long-branch attraction artifacts in the phylogeny of Saccharomyces species
-
Fares, M.A., Byrne, K.P., Wolfe, K.H.: Rate asymmetry after genome duplication causes substantial long-branch attraction artifacts in the phylogeny of Saccharomyces species. Mol. Biol. Evol. 23(2), 245-253 (2006)
-
(2006)
Mol. Biol. Evol
, vol.23
, Issue.2
, pp. 245-253
-
-
Fares, M.A.1
Byrne, K.P.2
Wolfe, K.H.3
-
9
-
-
33746345337
-
DLS-trees: A model of evolutionary scenarios
-
Gorecki, P., Tiutyn, J.: DLS-trees: a model of evolutionary scenarios. Theoretical Comput. Sci. 359(1-3), 378-399 (2006)
-
(2006)
Theoretical Comput. Sci
, vol.359
, Issue.1-3
, pp. 378-399
-
-
Gorecki, P.1
Tiutyn, J.2
-
10
-
-
0030253222
-
Reconstruction of ancient phylogenies
-
Guigó, R., Muchnik, I., Smith, T.F.: Reconstruction of ancient phylogenies. Mol. Phylogenet. Evol. 6(2), 189-213 (1996)
-
(1996)
Mol. Phylogenet. Evol
, vol.6
, Issue.2
, pp. 189-213
-
-
Guigó, R.1
Muchnik, I.2
Smith, T.F.3
-
11
-
-
0033723163
-
New algorithms for the duplication-loss model
-
Hallett, M.T., Lagergren, J.: New algorithms for the duplication-loss model. RECOMB 2000 , 138-146 (1996)
-
(1996)
RECOMB 2000
, pp. 138-146
-
-
Hallett, M.T.1
Lagergren, J.2
-
12
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., Conery, J.S.: The evolutionary fate and consequences of duplicate genes. Science 290(5494), 1151-1155 (2000)
-
(2000)
Science
, vol.290
, Issue.5494
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
13
-
-
0034938644
-
From gene trees to species trees
-
Ma, B., Li, M., Zhang, L.: From gene trees to species trees. SIAM J. Comput. 30(3), 729-752 (2000)
-
(2000)
SIAM J. Comput
, vol.30
, Issue.3
, pp. 729-752
-
-
Ma, B.1
Li, M.2
Zhang, L.3
-
14
-
-
34248217100
-
Inferring angiosperm phylogeny from EST data with widespread gene duplication
-
S
-
Sanderson, M.J., McMahon, M.M.: Inferring angiosperm phylogeny from EST data with widespread gene duplication. BMC Evol. Biol. 7(Suppl. 1), S3 (2007)
-
(2007)
BMC Evol. Biol
, vol.7
, Issue.SUPPL. 1
, pp. 3
-
-
Sanderson, M.J.1
McMahon, M.M.2
-
15
-
-
0034791426
-
A simple algorithm to infer gene duplication and speciation events on a gene tree
-
Zmasek, C.M., Eddy, S.R.: A simple algorithm to infer gene duplication and speciation events on a gene tree. Bioinformatics 17(9), 821-828 (2001)
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 821-828
-
-
Zmasek, C.M.1
Eddy, S.R.2
-
16
-
-
0030762443
-
On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies
-
Zhang, L.: On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. J. Comput. Biol. 4(2), 177-187 (1997)
-
(1997)
J. Comput. Biol
, vol.4
, Issue.2
, pp. 177-187
-
-
Zhang, L.1
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