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Volumn 7, Issue 4-5, 2007, Pages 535-542

BETTY: Prediction of beta;-strand type from sequence

Author keywords

Antiparallel beta sheets; Beta sheets; Beta strands; Long range constraints; Parallel beta sheets; Secondary structure prediction; Structure prediction; Support vector machine; SVM; Tertiary structure prediction

Indexed keywords

PROTEIN;

EID: 38149087243     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (16)
  • 3
    • 0013852463 scopus 로고
    • Structure of hen egg-white lysozyme. a three-dimensional Fourier synthesis at 2 Angstrom resolution
    • Blake, C. C., Koenig, D. F., Mair, G. A., North, A. C., Phillips, D. C. and Sarma, V. R. (1965). Structure of hen egg-white lysozyme. a three-dimensional Fourier synthesis at 2 Angstrom resolution. Nature 206, 757-761.
    • (1965) Nature , vol.206 , pp. 757-761
    • Blake, C.C.1    Koenig, D.F.2    Mair, G.A.3    North, A.C.4    Phillips, D.C.5    Sarma, V.R.6
  • 4
    • 84860507958 scopus 로고    scopus 로고
    • Three-stage prediction of protein β-sheets by neural networks, alignments and graph algorithms
    • Cheng, J. and Baldi, P. (2005). Three-stage prediction of protein β-sheets by neural networks, alignments and graph algorithms. Bioinformatics 21 Suppl. 1, i75-i84.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Cheng, J.1    Baldi, P.2
  • 5
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones, D. T. (1999). Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292, 195-202.
    • (1999) J. Mol. Biol , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 6
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. and Sander, C. (1983). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 7
    • 0141593924 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on an improved support vector machines approach
    • Kim, H. and Park, H. (2003). Protein secondary structure prediction based on an improved support vector machines approach. Protein Eng. 16, 553-560.
    • (2003) Protein Eng , vol.16 , pp. 553-560
    • Kim, H.1    Park, H.2
  • 8
    • 30344467519 scopus 로고    scopus 로고
    • Generalized protein structure prediction based on combination of fold-recognition and de novo folding with evaluation of models
    • Kolinski, A. and Bujnicki, J. M. (2005). Generalized protein structure prediction based on combination of fold-recognition and de novo folding with evaluation of models. Proteins 61, Suppl. 7, 84-90.
    • (2005) Proteins , vol.61 , Issue.SUPPL. 7 , pp. 84-90
    • Kolinski, A.1    Bujnicki, J.M.2
  • 9
    • 33645964629 scopus 로고    scopus 로고
    • Protein fold recognition using segmentation conditional random fields (SCRFs)
    • Liu, Y., Carbonell, J., Weigele, P. and Gopalakrishnan, V. (2006). Protein fold recognition using segmentation conditional random fields (SCRFs). J. Comput. Biol. 13, 394-406.
    • (2006) J. Comput. Biol , vol.13 , pp. 394-406
    • Liu, Y.1    Carbonell, J.2    Weigele, P.3    Gopalakrishnan, V.4
  • 10
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • Matthews, B. W. (1975). Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta 405 442-451.
    • (1975) Biochim. Biophys. Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 11
    • 76549238253 scopus 로고
    • The pleated sheet, a new layer configuration of polypeptide chains
    • Pauling, L. and Corey, R. B. (1951). The pleated sheet, a new layer configuration of polypeptide chains. Proc. Natl. Acad. Sci. USA 37 251-256.
    • (1951) Proc. Natl. Acad. Sci. USA , vol.37 , pp. 251-256
    • Pauling, L.1    Corey, R.B.2
  • 12
    • 0033056948 scopus 로고    scopus 로고
    • A protein taxonomy based on secondary structure
    • Przytycka, T., Aurora, R. and Rose, G. D. (1999). A protein taxonomy based on secondary structure. Nat. Struct. Biol. 6, 672-682.
    • (1999) Nat. Struct. Biol , vol.6 , pp. 672-682
    • Przytycka, T.1    Aurora, R.2    Rose, G.D.3
  • 13
    • 0035782925 scopus 로고    scopus 로고
    • Review: Protein secondary structure prediction continues to rise
    • Rost, B. (2001). Review: Protein secondary structure prediction continues to rise. J. Struct., Biol. 134, 204-218.
    • (2001) J. Struct., Biol , vol.134 , pp. 204-218
    • Rost, B.1
  • 15
    • 0141523251 scopus 로고    scopus 로고
    • β Edge strands in protein structure prediction and aggregation
    • Siepen, J. A., Radford, S. E. and Westhead, D. R. (2003). β Edge strands in protein structure prediction and aggregation. Protein Sci. 12, 2348-2359.
    • (2003) Protein Sci , vol.12 , pp. 2348-2359
    • Siepen, J.A.1    Radford, S.E.2    Westhead, D.R.3
  • 16
    • 33845366830 scopus 로고    scopus 로고
    • Support vector machines for prediction of dihedral angle regions
    • Zimmermann, O. and Hansmann, U. H. E. (2006). Support vector machines for prediction of dihedral angle regions. Bioinformatics 22, 3009-3015.
    • (2006) Bioinformatics , vol.22 , pp. 3009-3015
    • Zimmermann, O.1    Hansmann, U.H.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.