-
2
-
-
33746207763
-
Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes
-
Ng P., Tan J.J., Ooi H.S., Lee Y.L., Chiu K.P., Fullwood M.J., Srinivasan K.G., Perbost C., Du L., Sung W.K., Wei C.L., and Ruan Y. Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes. Nucleic Acids Res. 34 (2006) e84
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Ng, P.1
Tan, J.J.2
Ooi, H.S.3
Lee, Y.L.4
Chiu, K.P.5
Fullwood, M.J.6
Srinivasan, K.G.7
Perbost, C.8
Du, L.9
Sung, W.K.10
Wei, C.L.11
Ruan, Y.12
-
3
-
-
20844463584
-
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
-
Ng P., Wei C.L., Sung W.K., Chiu K.P., Lipovich L., Ang C.C., Gupta S., Shahab A., Ridwan A., Wong C.H., Liu E.T., and Ruan Y. Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat. Methods 2 (2005) 105-111
-
(2005)
Nat. Methods
, vol.2
, pp. 105-111
-
-
Ng, P.1
Wei, C.L.2
Sung, W.K.3
Chiu, K.P.4
Lipovich, L.5
Ang, C.C.6
Gupta, S.7
Shahab, A.8
Ridwan, A.9
Wong, C.H.10
Liu, E.T.11
Ruan, Y.12
-
4
-
-
2442689079
-
A versatile assay for high-throughput gene expression profiling on universal array matrices
-
Fan J.B., Yeakley J.M., Bibikova M., Chudin E., Wickham E., Chen J., Doucet D., Rigault P., Zhang B., Shen R., McBride C., Li H.R., Fu X.D., Oliphant A., Barker D.L., and Chee M.S. A versatile assay for high-throughput gene expression profiling on universal array matrices. Genome Res. 14 (2004) 878-885
-
(2004)
Genome Res.
, vol.14
, pp. 878-885
-
-
Fan, J.B.1
Yeakley, J.M.2
Bibikova, M.3
Chudin, E.4
Wickham, E.5
Chen, J.6
Doucet, D.7
Rigault, P.8
Zhang, B.9
Shen, R.10
McBride, C.11
Li, H.R.12
Fu, X.D.13
Oliphant, A.14
Barker, D.L.15
Chee, M.S.16
-
5
-
-
0036215612
-
Profiling alternative splicing on fiber-optic arrays
-
Yeakley J.M., Fan J.B., Doucet D., Luo L., Wickham E., Ye Z., Chee M.S., and Fu X.D. Profiling alternative splicing on fiber-optic arrays. Nat. Biotechnol. 20 (2002) 353-358
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 353-358
-
-
Yeakley, J.M.1
Fan, J.B.2
Doucet, D.3
Luo, L.4
Wickham, E.5
Ye, Z.6
Chee, M.S.7
Fu, X.D.8
-
6
-
-
33747657739
-
A method for high-throughput gene expression signature analysis
-
Peck D., Crawford E.D., Ross K.N., Stegmaier K., Golub T.R., and Lamb J. A method for high-throughput gene expression signature analysis. Genome Biol. 7 (2006) R61
-
(2006)
Genome Biol.
, vol.7
-
-
Peck, D.1
Crawford, E.D.2
Ross, K.N.3
Stegmaier, K.4
Golub, T.R.5
Lamb, J.6
-
7
-
-
33646021021
-
A multiplex branched DNA assay for parallel quantitative gene expression profiling
-
Flagella M., Bui S., Zheng Z., Nguyen C.T., Zhang A., Pastor L., Ma Y., Yang W., Crawford K.L., McMaster G.K., Witney F., and Luo Y. A multiplex branched DNA assay for parallel quantitative gene expression profiling. Anal. Biochem. 352 (2006) 50-60
-
(2006)
Anal. Biochem.
, vol.352
, pp. 50-60
-
-
Flagella, M.1
Bui, S.2
Zheng, Z.3
Nguyen, C.T.4
Zhang, A.5
Pastor, L.6
Ma, Y.7
Yang, W.8
Crawford, K.L.9
McMaster, G.K.10
Witney, F.11
Luo, Y.12
-
8
-
-
33645832164
-
Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA
-
Pettersson E., Lindskog M., Lundeberg J., and Ahmadian A. Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA. Nucleic Acids Res. 34 (2006) e49
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Pettersson, E.1
Lindskog, M.2
Lundeberg, J.3
Ahmadian, A.4
-
9
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
Uhlen M., Bjorling E., Agaton C., Szigyarto C.A., Amini B., Andersen E., Andersson A.C., Angelidou P., Asplund A., Asplund C., Berglund L., Bergstrom K., Brumer H., Cerjan D., Ekstrom M., Elobeid A., Eriksson C., Fagerberg L., Falk R., Fall J., Forsberg M., Bjorklund M.G., Gumbel K., Halimi A., Hallin I., Hamsten C., Hansson M., Hedhammar M., Hercules G., Kampf C., Larsson K., Lindskog M., Lodewyckx W., Lund J., Lundeberg J., Magnusson K., Malm E., Nilsson P., Odling J., Oksvold P., Olsson I., Oster E., Ottosson J., Paavilainen L., Persson A., Rimini R., Rockberg J., Runeson M., Sivertsson A., Skollermo A., Steen J., Stenvall M., Sterky F., Stromberg S., Sundberg M., Tegel H., Tourle S., Wahlund E., Walden A., Wan J., Wernerus H., Westberg J., Wester K., Wrethagen U., Xu L.L., Hober S., and Ponten F. A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol. Cell Proteomics 4 (2005) 1920-1932
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1920-1932
-
-
Uhlen, M.1
Bjorling, E.2
Agaton, C.3
Szigyarto, C.A.4
Amini, B.5
Andersen, E.6
Andersson, A.C.7
Angelidou, P.8
Asplund, A.9
Asplund, C.10
Berglund, L.11
Bergstrom, K.12
Brumer, H.13
Cerjan, D.14
Ekstrom, M.15
Elobeid, A.16
Eriksson, C.17
Fagerberg, L.18
Falk, R.19
Fall, J.20
Forsberg, M.21
Bjorklund, M.G.22
Gumbel, K.23
Halimi, A.24
Hallin, I.25
Hamsten, C.26
Hansson, M.27
Hedhammar, M.28
Hercules, G.29
Kampf, C.30
Larsson, K.31
Lindskog, M.32
Lodewyckx, W.33
Lund, J.34
Lundeberg, J.35
Magnusson, K.36
Malm, E.37
Nilsson, P.38
Odling, J.39
Oksvold, P.40
Olsson, I.41
Oster, E.42
Ottosson, J.43
Paavilainen, L.44
Persson, A.45
Rimini, R.46
Rockberg, J.47
Runeson, M.48
Sivertsson, A.49
Skollermo, A.50
Steen, J.51
Stenvall, M.52
Sterky, F.53
Stromberg, S.54
Sundberg, M.55
Tegel, H.56
Tourle, S.57
Wahlund, E.58
Walden, A.59
Wan, J.60
Wernerus, H.61
Westberg, J.62
Wester, K.63
Wrethagen, U.64
Xu, L.L.65
Hober, S.66
Ponten, F.67
more..
-
11
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25 (2001) 402-408
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
12
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van 't Veer L.J., Dai H., van de Vijver M.J., He Y.D., Hart A.A., Mao M., Peterse H.L., van der Kooy K., Marton M.J., Witteveen A.T., Schreiber G.J., Kerkhoven R.M., Roberts C., Linsley P.S., Bernards R., and Friend S.H. Gene expression profiling predicts clinical outcome of breast cancer. Nature 415 (2002) 530-536
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van 't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
13
-
-
28044462186
-
Gene-expression profiling and the future of adjuvant therapy
-
van de Vijver M. Gene-expression profiling and the future of adjuvant therapy. Oncologist 10 Suppl 2 (2005) 30-34
-
(2005)
Oncologist
, vol.10
, Issue.SUPPL. 2
, pp. 30-34
-
-
van de Vijver, M.1
-
14
-
-
0038358258
-
DNA microarrays in clinical practice: past, present, and future
-
Sevenet N., and Cussenot O. DNA microarrays in clinical practice: past, present, and future. Clin. Exp. Med. 3 (2003) 1-3
-
(2003)
Clin. Exp. Med.
, vol.3
, pp. 1-3
-
-
Sevenet, N.1
Cussenot, O.2
-
15
-
-
33845877973
-
A gene expression signature predicts survival of patients with stage I non-small cell lung cancer
-
Lu Y., Lemon W., Liu P.Y., Yi Y., Morrison C., Yang P., Sun Z., Szoke J., Gerald W.L., Watson M., Govindan R., and You M. A gene expression signature predicts survival of patients with stage I non-small cell lung cancer. PLoS Med. 3 (2006) e467
-
(2006)
PLoS Med.
, vol.3
-
-
Lu, Y.1
Lemon, W.2
Liu, P.Y.3
Yi, Y.4
Morrison, C.5
Yang, P.6
Sun, Z.7
Szoke, J.8
Gerald, W.L.9
Watson, M.10
Govindan, R.11
You, M.12
-
16
-
-
5444259343
-
Gene microarray analysis of peripheral blood cells in pulmonary arterial hypertension
-
Bull T.M., Coldren C.D., Moore M., Sotto-Santiago S.M., Pham D.V., Nana-Sinkam S.P., Voelkel N.F., and Geraci M.W. Gene microarray analysis of peripheral blood cells in pulmonary arterial hypertension. Am. J. Respir. Crit. Care Med. 170 (2004) 911-919
-
(2004)
Am. J. Respir. Crit. Care Med.
, vol.170
, pp. 911-919
-
-
Bull, T.M.1
Coldren, C.D.2
Moore, M.3
Sotto-Santiago, S.M.4
Pham, D.V.5
Nana-Sinkam, S.P.6
Voelkel, N.F.7
Geraci, M.W.8
-
17
-
-
0037095769
-
Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
-
Yuen T., Wurmbach E., Pfeffer R.L., Ebersole B.J., and Sealfon S.C. Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res. 30 (2002) e48
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yuen, T.1
Wurmbach, E.2
Pfeffer, R.L.3
Ebersole, B.J.4
Sealfon, S.C.5
-
18
-
-
14944364973
-
The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures
-
Holmberg A., Blomstergren A., Nord O., Lukacs M., Lundeberg J., and Uhlen M. The biotin-streptavidin interaction can be reversibly broken using water at elevated temperatures. Electrophoresis 26 (2005) 501-510
-
(2005)
Electrophoresis
, vol.26
, pp. 501-510
-
-
Holmberg, A.1
Blomstergren, A.2
Nord, O.3
Lukacs, M.4
Lundeberg, J.5
Uhlen, M.6
-
21
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry R., Leisch F., Li C., Maechler M., Rossini A.J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J.Y., and Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5 (2004) R80
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
22
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth G.K., and Speed T. Normalization of cDNA microarray data. Methods 31 (2003) 265-273
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
23
-
-
1342294092
-
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
-
Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J., and Speed T.P. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30 (2002) e15
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
|