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Volumn 32, Issue 1, 2008, Pages 73-83

Inferential testing for linkage with GENEHUNTER-MODSCORE: The impact of the pedigree structure on the null distribution of multipoint MOD scores

Author keywords

Likelihood; Maximization; Monte Carlo simulation; Parametric analysis; Significance; Trait model; Type I error

Indexed keywords

ARTICLE; COMPUTER SIMULATION; INFERENTIAL STATISTICS; LINKAGE ANALYSIS; MONTE CARLO METHOD; NULL HYPOTHESIS; PARAMETRIC TEST; PEDIGREE; SCORING SYSTEM;

EID: 38149051548     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20264     Document Type: Article
Times cited : (14)

References (32)
  • 1
    • 0032708026 scopus 로고    scopus 로고
    • Comparison of empirical strategies to maximize GENEHUNTER lod scores
    • Chen CH, Finch SJ, Mendell NR, Gordon D. 1999. Comparison of empirical strategies to maximize GENEHUNTER lod scores. Genet Epidemiol 17(Suppl1):103-108.
    • (1999) Genet Epidemiol , vol.17 , Issue.SUPPL.1 , pp. 103-108
    • Chen, C.H.1    Finch, S.J.2    Mendell, N.R.3    Gordon, D.4
  • 2
    • 0022728801 scopus 로고
    • Effects of misspecifying genetic parameters in lod score analysis
    • Clerget-Darpoux F, Bonaïti-Pellié C, Hochez J. 1986. Effects of misspecifying genetic parameters in lod score analysis. Biometrics 42:393-399.
    • (1986) Biometrics , vol.42 , pp. 393-399
    • Clerget-Darpoux, F.1    Bonaïti-Pellié, C.2    Hochez, J.3
  • 4
    • 4043126045 scopus 로고    scopus 로고
    • Dietter J, Spiegel A, an Mey D, Pflug HJ, Al-Kateb H, Hoffmann K, Wienker TF, Strauch K. 2004. Efficient two-trait-locus linkage analysis through program optimization and parallelization: Application to hypercholesterolemia. Eur J Hum Genet 12: 542-550.
    • Dietter J, Spiegel A, an Mey D, Pflug HJ, Al-Kateb H, Hoffmann K, Wienker TF, Strauch K. 2004. Efficient two-trait-locus linkage analysis through program optimization and parallelization: Application to hypercholesterolemia. Eur J Hum Genet 12: 542-550.
  • 5
    • 0024788805 scopus 로고
    • Man bites dog? The validity of maximizing lod scores to determine mode of inheritance
    • Elston RC. 1989. Man bites dog? The validity of maximizing lod scores to determine mode of inheritance. Am J Med Genet 34: 487-488.
    • (1989) Am J Med Genet , vol.34 , pp. 487-488
    • Elston, R.C.1
  • 6
    • 0024828416 scopus 로고
    • Inferring mode of inheritance by comparison of lod scores
    • Greenberg DA. 1989. Inferring mode of inheritance by comparison of lod scores. Am J Med Genet 34:480-486.
    • (1989) Am J Med Genet , vol.34 , pp. 480-486
    • Greenberg, D.A.1
  • 7
    • 0035186189 scopus 로고    scopus 로고
    • Determining trait locus position from multipoint analysis: Accuracy and power of three different statistics
    • Greenberg DA, Abreu PC. 2001. Determining trait locus position from multipoint analysis: Accuracy and power of three different statistics. Genet Epidemiol 21:299-314.
    • (2001) Genet Epidemiol , vol.21 , pp. 299-314
    • Greenberg, D.A.1    Abreu, P.C.2
  • 8
    • 0028029930 scopus 로고
    • Lods, wrods, and mods: The interpretation of lod scores calculated under different models
    • Hodge SE, Elston RC. 1994. Lods, wrods, and mods: The interpretation of lod scores calculated under different models. Genet Epidemiol 11:329-342.
    • (1994) Genet Epidemiol , vol.11 , pp. 329-342
    • Hodge, S.E.1    Elston, R.C.2
  • 9
    • 0031019267 scopus 로고    scopus 로고
    • Magnitude of type I error when single-locus linkage analysis is maximized over models: A simulation study
    • Hodge SE, Abreu PC, Greenberg DA. 1997. Magnitude of type I error when single-locus linkage analysis is maximized over models: A simulation study. Am J Hum Genet 60:217-227.
    • (1997) Am J Hum Genet , vol.60 , pp. 217-227
    • Hodge, S.E.1    Abreu, P.C.2    Greenberg, D.A.3
  • 10
    • 0027529253 scopus 로고
    • Asymptotic properties of affected-sib-pair linkage analysis
    • Holmans P. 1993. Asymptotic properties of affected-sib-pair linkage analysis. Am J Hum Genet 52:362-374.
    • (1993) Am J Hum Genet , vol.52 , pp. 362-374
    • Holmans, P.1
  • 11
    • 18644364751 scopus 로고    scopus 로고
    • A note on linkage analysis with affected sib triplets
    • Knapp M. 2005. A note on linkage analysis with affected sib triplets. Hum Hered 59:21-25.
    • (2005) Hum Hered , vol.59 , pp. 21-25
    • Knapp, M.1
  • 12
    • 33646263587 scopus 로고    scopus 로고
    • Power Comparison of generalizations of the mean test for affected sib pairs in case of incompletely informative markers
    • Knapp M. 2006. Power Comparison of generalizations of the mean test for affected sib pairs in case of incompletely informative markers. Genet Epidemiol 30:314-319.
    • (2006) Genet Epidemiol , vol.30 , pp. 314-319
    • Knapp, M.1
  • 13
    • 2342456350 scopus 로고    scopus 로고
    • Affected-sib-pair test for linkage based on constraints for identical-by-decent distribution corresponding to disease models with imprinting
    • Knapp M, Strauch K. 2004. Affected-sib-pair test for linkage based on constraints for identical-by-decent distribution corresponding to disease models with imprinting. Genet Epidemiol 26:273-285.
    • (2004) Genet Epidemiol , vol.26 , pp. 273-285
    • Knapp, M.1    Strauch, K.2
  • 14
    • 0028123781 scopus 로고
    • Linkage analysis in nuclear families. 2: Relationship between affected sib-pair tests and lod score analysis
    • Knapp M, Seuchter SA, Baur MP. 1994. Linkage analysis in nuclear families. 2: Relationship between affected sib-pair tests and lod score analysis. Hum Hered 44:44-51.
    • (1994) Hum Hered , vol.44 , pp. 44-51
    • Knapp, M.1    Seuchter, S.A.2    Baur, M.P.3
  • 15
    • 0031949481 scopus 로고    scopus 로고
    • Faster multipoint linkage analysis using Fourier transforms
    • Kruglyak L, Lander ES. 1998. Faster multipoint linkage analysis using Fourier transforms. J Comput Biol 5:1-7.
    • (1998) J Comput Biol , vol.5 , pp. 1-7
    • Kruglyak, L.1    Lander, E.S.2
  • 16
    • 0029886532 scopus 로고    scopus 로고
    • Parametric and nonparametric linkage analysis: A unified multipoint approach
    • Kruglyak L, Daly MJ, Reeve-Daly MP, Lander ES. 1996. Parametric and nonparametric linkage analysis: A unified multipoint approach. Am J Hum Genet 58:1347-1363.
    • (1996) Am J Hum Genet , vol.58 , pp. 1347-1363
    • Kruglyak, L.1    Daly, M.J.2    Reeve-Daly, M.P.3    Lander, E.S.4
  • 17
    • 10844237959 scopus 로고    scopus 로고
    • On computation of p-values in parametric linkage analysis
    • Kurbasic A, Hössjer O. 2004. On computation of p-values in parametric linkage analysis. Hum Hered 57:207-219.
    • (2004) Hum Hered , vol.57 , pp. 207-219
    • Kurbasic, A.1    Hössjer, O.2
  • 18
    • 0000803318 scopus 로고
    • Construction of multilocus genetic linkage maps in humans
    • Lander ES, Green P. 1987. Construction of multilocus genetic linkage maps in humans. Proc Natl Acad Sci USA 84:2363-2367.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 2363-2367
    • Lander, E.S.1    Green, P.2
  • 19
    • 0028877463 scopus 로고
    • Genetic dissection of complex traits: Guidelines for interpreting and reporting linkage results
    • Lander ES, Kruglyak L. 1995. Genetic dissection of complex traits: Guidelines for interpreting and reporting linkage results. Nat Genet 11:241-247.
    • (1995) Nat Genet , vol.11 , pp. 241-247
    • Lander, E.S.1    Kruglyak, L.2
  • 20
    • 0035071608 scopus 로고    scopus 로고
    • Efficient multipoint linkage analysis through reduction of inheritance space
    • Markianos K, Daly MJ, Kruglyak L. 2001. Efficient multipoint linkage analysis through reduction of inheritance space. Am J Hum Genet 68:963-977.
    • (2001) Am J Hum Genet , vol.68 , pp. 963-977
    • Markianos, K.1    Daly, M.J.2    Kruglyak, L.3
  • 21
    • 0043048571 scopus 로고
    • Sequential tests for the detection of linkage
    • Morton NE. 1955. Sequential tests for the detection of linkage. Am J Hum Genet. 7:277-318.
    • (1955) Am J Hum Genet , vol.7 , pp. 277-318
    • Morton, N.E.1
  • 22
    • 0021329644 scopus 로고
    • Segregation analysis incorporating linkage markers. 1. Single-locus models with an application to type I diabetes
    • Risch N. 1984. Segregation analysis incorporating linkage markers. 1. Single-locus models with an application to type I diabetes. Am J Hum Genet 36:363-386.
    • (1984) Am J Hum Genet , vol.36 , pp. 363-386
    • Risch, N.1
  • 23
    • 0025020461 scopus 로고
    • Linkage strategies for genetically complex traits. III. The effect of marker polymorphism on analysis of affected relative pairs
    • Risch N. 1990. Linkage strategies for genetically complex traits. III. The effect of marker polymorphism on analysis of affected relative pairs. Am J Hum Genet 46:242-253.
    • (1990) Am J Hum Genet , vol.46 , pp. 242-253
    • Risch, N.1
  • 24
    • 0026671473 scopus 로고
    • Corrections to 'Linkage strategies for genetically complex traits. III. The effect of marker polymorphism on analysis of affected relative pairs'. Am
    • Risch N. 1992. Corrections to 'Linkage strategies for genetically complex traits. III. The effect of marker polymorphism on analysis of affected relative pairs'. Am J Hum Genet 51: 673-675.
    • (1992) J Hum Genet , vol.51 , pp. 673-675
    • Risch, N.1
  • 25
    • 0026529005 scopus 로고
    • Model misspecification and multipoint linkage analysis
    • Risch N, Giuffra L. 1992. Model misspecification and multipoint linkage analysis. Hum Hered 42:77-92.
    • (1992) Hum Hered , vol.42 , pp. 77-92
    • Risch, N.1    Giuffra, L.2
  • 26
    • 20444363581 scopus 로고    scopus 로고
    • Parametric linkage analysis with automatic optimization of the disease model parameters
    • Strauch K. 2003. Parametric linkage analysis with automatic optimization of the disease model parameters. Am J Hum Genet 73(Suppl1):A2624.
    • (2003) Am J Hum Genet , vol.73 , Issue.SUPPL.1
    • Strauch, K.1
  • 27
    • 34250747331 scopus 로고    scopus 로고
    • MOD-score analysis with simple pedigrees: An overview of likelihood-based linkage methods
    • Strauch K. 2007. MOD-score analysis with simple pedigrees: An overview of likelihood-based linkage methods. Hum Hered 64:192-202.
    • (2007) Hum Hered , vol.64 , pp. 192-202
    • Strauch, K.1
  • 28
    • 0033911385 scopus 로고    scopus 로고
    • Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: Application to mite sensitization
    • Strauch K, Fimmers R, Kurz T, Deichmann KA, Wienker TF, Baur MP. 2000. Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: Application to mite sensitization. Am J Hum Genet 66:1945-1957.
    • (2000) Am J Hum Genet , vol.66 , pp. 1945-1957
    • Strauch, K.1    Fimmers, R.2    Kurz, T.3    Deichmann, K.A.4    Wienker, T.F.5    Baur, M.P.6
  • 29
    • 0018150112 scopus 로고
    • The generalized sib pair IBD distribution: Its use in the detection of linkage
    • Suarez BK, Rice J, Reich T. 1978. The generalized sib pair IBD distribution: Its use in the detection of linkage. Ann Hum Genet 42:87-94.
    • (1978) Ann Hum Genet , vol.42 , pp. 87-94
    • Suarez, B.K.1    Rice, J.2    Reich, T.3
  • 30
    • 2342654046 scopus 로고    scopus 로고
    • Percentiles of the null distribution of 2 maximum lod score tests
    • Ulgen A, Yoo YJ, Gordon D, Finch SJ, Mendell NR. 2004. Percentiles of the null distribution of 2 maximum lod score tests. Hum Hered 57:39-48.
    • (2004) Hum Hered , vol.57 , pp. 39-48
    • Ulgen, A.1    Yoo, Y.J.2    Gordon, D.3    Finch, S.J.4    Mendell, N.R.5
  • 31
    • 0025008255 scopus 로고
    • Measuring the inflation of the lod score due to its maximization over model parameter values in human linkage analysis
    • Weeks DE, Lehner T, Squires-Wheeler E, Kaufmann C, Ott J. 1990. Measuring the inflation of the lod score due to its maximization over model parameter values in human linkage analysis. Genet Epidemiol 7:237-243.
    • (1990) Genet Epidemiol , vol.7 , pp. 237-243
    • Weeks, D.E.1    Lehner, T.2    Squires-Wheeler, E.3    Kaufmann, C.4    Ott, J.5
  • 32
    • 33745606737 scopus 로고    scopus 로고
    • Distribution and magnitude of type I error of model-based multipoint lod scores: Implications for multipoint mod scores
    • Xing C, Elston RC. 2006. Distribution and magnitude of type I error of model-based multipoint lod scores: Implications for multipoint mod scores. Genet Epidemiol 30: 447-458.
    • (2006) Genet Epidemiol , vol.30 , pp. 447-458
    • Xing, C.1    Elston, R.C.2


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