An interspecific hybrid as a tool to study phylogenetic relationships in plants using the GISH technique

Chromosome Research

Volumn 15, Issue 8, 2007, Pages 1051-1059

  Markova, Michaela ^a   Michu, Elleni ^a   Vyskot, Boris ^a   Janousek, Bohuslav ^a   Zluvova, Jitka ^a  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

Author keywords

GISH; Hybrid; Phylogenetics; Silene

Indexed keywords

RIBOSOME DNA;

ARTICLE; CORRELATION ANALYSIS; DNA SEQUENCE; EVOLUTION; FLUORESCENCE; FLUORESCENCE IN SITU HYBRIDIZATION; GENOME; GENOMIC IN SITU HYBRIDIZATION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SILENE; SILENE LATIFOLIA; SILENE VISCOSA; TREE;

DNA, PLANT; DNA, RIBOSOMAL; GENOME, PLANT; IN SITU HYBRIDIZATION; IN SITU HYBRIDIZATION, FLUORESCENCE; PHYLOGENY; SILENE;

SILENE; SILENE LATIFOLIA; SILENE VISCOSA;

EID: 38049105978     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-007-1180-8     Document Type: Article

References (31)

1. Buzek J, Koutnikova H, Houben A et al. (1997) Isolation and characterization of X chromosome-derived DNA sequences from a dioecious plant Melandrium album. Chromosome Res 5: 57-65.
2. Chase MW, Knapp S, Cox AV et al. (2003) Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). Ann Bot 92: 107-127.
3. Cheng BF, Séguin-Swartz G, Somers DJ (2002) Cytogenetic and molecular characterization of intergeneric hybrids between Brassica napus and Orychophragmus violaceus. Genome 45: 110-115.
4. Desel C, Jansen R, Dedong G, Schmidt T (2002) Painting of parental chromatin in Beta hybrids by multi-color fluorescent in situ hybridization. Ann Bot 89: 171-181.
5. Desfeux C, Maurice S, Henry JP, Lejeune B, Gouyon PH (1996) Evolution of reproductive systems in the genus Silene. Proc R Soc Lond Ser B Biol Sci 263: 409-414.
6. Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543-548.
7. Gonzalez G, Comas C, Confalonieri V, Naranjo CA, Poggio L (2006) Genomic affinities between maize and Zea perennis using classical and molecular cytogenetic methods (GISH-FISH). Chromosome Res 14: 629-635.
8. Heslop-Harrison JS, Harrison GE, Leitch IJ (1992) Reprobing of DNA/DNA in situ hybridisation preparations. Trends Genet 8: 372-373.
9. Hobza R, Vyskot B (2007) Laser microdissection-based analysis of plant sex chromosomes. Methods Cell Biol 82: 433-453.
10. Hobza R, Lengerova M, Svoboda J, Kubekova H, Kejnovsky E, Vyskot B (2006) An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution. Chromosoma 115: 376-382.
11. Ji Y, Pertuzé R, Chetelar RT (2004) Genome differentiation by GISH in interspecific and intergeneric hybrids of tomato and related nightshade. Chromosome Res 12: 107-116.
12. Jiang J, Gill BS (2006) Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome 49: 1057-1068.
13. Jurgens A, Witt T, Gottsberger G (2002) Pollen grain numbers, ovule numbers and pollen-ovule ratios in Caryophylloideae: correlation with breeding systems, pollination, life form, style number, and sexual system. Sex Plant Reprod 14: 279-289.
14. Kato A, Vega JM, Han F, Lamb JC, Birchler JA (2005) Advances in plant chromosome identification and cytogenetic techniques. Curr Opinion Plant Biol 8: 148-154.
15. Kiss T, Kiss M, Solymosy F (1989) Nucleotide sequence of a 25S rRNA gene from tomato. Nucleic Acids Res 17: 796.
16. Kopecky D, Loureiro J, Zwierzykowski Z, Ghesquiere M, Dolezel J (2006) Genome constitution and evolution in Lolium∈×∈Festuca hybrid cultivars (Festulolium). Theor Appl Genet 113: 731-742.
17. Lengerova M, Kejnovsky E, Hobza R, Macas J, Grant SR, Vyskot B (2004) Multicolor FISH mapping of the dioecious model plant, Silene latifolia. Theor Appl Genet 108: 1193-1199.
18. Lim KY, Matyasek R, Lichtenstein CP, Leitch AR (2000) Molecular cytogenetic analyses and phylogenetic studies in the Nicotiana section Tomentosae. Chromosoma 109: 245-258.
19. Markova M, Lengerova M, Zluvova J, Janousek B, Vyskot B (2006) Karyological analysis of an interspecific hybrid between the dioecious Silene latifolia and the hermaphroditic Silene viscosa. Genome 49: 373-379.
20. Milner M, Patwardhan V, Bansode A et al. (2003) Constructing 3D phylogenetic trees. Curr Sci 85: 1471-1487.
21. Neumann P, Koblizkova A, Navratilova A, Macas J (2006) Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement. Genetics 173: 1047-1056.
22. Nicolas M, Marais G, Hykelova V et al. (2005) A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants. PLoS Biol 3: e4.
23. Oxelman B, Liden M (1995) Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences. Taxon 44: 525-542.
24. Popp M, Oxelman B (2004) Evolution of a RNA polymerase gene family in Silene (Caryophyllaceae) - incomplete concerted evolution and topological congruence among paralogues. Syst Biol 53: 914-932.
25. Sharma S, Raina SN (2005) Organization and evolution of highly repeated satellite DNA sequences in plant chromosomes. Cytogenet Genome Res 109: 15-26.
26. Schwarzacher T, Heslop-Harrison P (2000) Practical in situ Hybridization. New York: Springer-Verlag.
27. Soltis PS, Soltis DA, Wolf PG, Nickrent DE, Chaw SM, Chapman RL (1999) The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal? Mol Biol Evol 16: 1774-1784.
28. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
29. Vyskot B, Hobza R (2004) Gender in plants: sex chromosomes are emerging from the fog. Trends Genet 20: 432-438.
30. Whelan S, Lio P, Goldman N (2001) Molecular phylogenetics: state-of-the art methods for looking into the past. Trends Genet 17: 262-272
31. Zluvova J, Lengerova M, Markova M et al. (2005) The inter-specific hybrid Silene latifolia∈×∈S. viscosa reveals early events of sex chromosome evolution. Evol Dev 7: 327-336.