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Volumn 47, Issue 1, 2008, Pages 3-17

Using spring repulsions to model entanglement interactions in Brownian dynamics simulations of bead-spring chains

Author keywords

Bead spring simulation; Brownian dynamics; DNA electrophoresis

Indexed keywords

BROWNIAN MOVEMENT; CHAIN LENGTH; COMPUTER SIMULATION; DNA; ELECTROPHORESIS; MOLECULAR INTERACTIONS; PECLET NUMBER;

EID: 38049082586     PISSN: 00354511     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00397-007-0189-4     Document Type: Article
Times cited : (20)

References (17)
  • 1
    • 0027485885 scopus 로고
    • Capillary electrophoresis of DNA in uncross-linked polymer solutions
    • Barron AE, Soane DS, Blanch HW (1993) Capillary electrophoresis of DNA in uncross-linked polymer solutions. J Chromatogr A 652:3-16
    • (1993) J Chromatogr A , vol.652 , pp. 3-16
    • Barron, A.E.1    Soane, D.S.2    Blanch, H.W.3
  • 2
    • 0036630797 scopus 로고    scopus 로고
    • Brownian dynamics simulations of isolated polymer molecules in shear flow near adsorbing and nonadsorbing surfaces
    • Chopra M, Larson RG (2002) Brownian dynamics simulations of isolated polymer molecules in shear flow near adsorbing and nonadsorbing surfaces. J Rheol 46:831-862
    • (2002) J Rheol , vol.46 , pp. 831-862
    • Chopra, M.1    Larson, R.G.2
  • 3
    • 0034897492 scopus 로고    scopus 로고
    • Three-dimensional observation of electrophoretic migration of dsDNA in semidilute hydroxy-ethylcellulose solution
    • de Carmejane O, Yamaguchi Y, Todorov TI, Morris MD (2001) Three-dimensional observation of electrophoretic migration of dsDNA in semidilute hydroxy-ethylcellulose solution. Electrophoresis 22:2433-2441
    • (2001) Electrophoresis , vol.22 , pp. 2433-2441
    • de Carmejane, O.1    Yamaguchi, Y.2    Todorov, T.I.3    Morris, M.D.4
  • 4
    • 0037155605 scopus 로고    scopus 로고
    • Self-assembled magnetic matrices for DNA separation chips
    • Doyle PS, Bibette J, Bancaud A, Viovy JL (2002) Self-assembled magnetic matrices for DNA separation chips. Science 295:2237
    • (2002) Science , vol.295 , pp. 2237
    • Doyle, P.S.1    Bibette, J.2    Bancaud, A.3    Viovy, J.L.4
  • 5
    • 0030084649 scopus 로고    scopus 로고
    • Computer simulations of polymer chain relaxation via Brownian motion
    • Grassia P, Hinch EJ (1996) Computer simulations of polymer chain relaxation via Brownian motion. J Fluid Mech 308:255-288
    • (1996) J Fluid Mech , vol.308 , pp. 255-288
    • Grassia, P.1    Hinch, E.J.2
  • 6
    • 31544456648 scopus 로고    scopus 로고
    • Brownian dynamics simulations with stiff FENE-Fraenkel springs as approximations to rods in bead-spring models
    • Hsieh C, Jain S, Larson RG (2006) Brownian dynamics simulations with stiff FENE-Fraenkel springs as approximations to rods in bead-spring models. J Chem Phys 124:044911
    • (2006) J Chem Phys , vol.124 , pp. 044911
    • Hsieh, C.1    Jain, S.2    Larson, R.G.3
  • 7
    • 0035870557 scopus 로고    scopus 로고
    • Brownian dynamics simulations of flexible polymers with spring-spring repulsions
    • Kumar S, Larson RG (2001) Brownian dynamics simulations of flexible polymers with spring-spring repulsions. J Chem Phys 114:6937-6941
    • (2001) J Chem Phys , vol.114 , pp. 6937-6941
    • Kumar, S.1    Larson, R.G.2
  • 9
    • 35949005177 scopus 로고
    • DNA electrophoretic collisions with single obstacles
    • Nixon GI, Slater GW (1994) DNA electrophoretic collisions with single obstacles. Phys Rev E 50:5033-5038
    • (1994) Phys Rev E , vol.50 , pp. 5033-5038
    • Nixon, G.I.1    Slater, G.W.2
  • 10
    • 0037043447 scopus 로고    scopus 로고
    • Time and length scales of polymer melts studied by coarse-grained molecular dynamics simulations
    • Padding JT, Briels WJ (2002) Time and length scales of polymer melts studied by coarse-grained molecular dynamics simulations. J Chem Phys 117:925-943
    • (2002) J Chem Phys , vol.117 , pp. 925-943
    • Padding, J.T.1    Briels, W.J.2
  • 11
    • 0037425988 scopus 로고    scopus 로고
    • A computational study of DNA separations in sparse disordered and periodic arrays of posts
    • Patel PD, Shaqfeh ESG (2003) A computational study of DNA separations in sparse disordered and periodic arrays of posts. J Chem Phys 118:2941-2951
    • (2003) J Chem Phys , vol.118 , pp. 2941-2951
    • Patel, P.D.1    Shaqfeh, E.S.G.2
  • 12
    • 33745621069 scopus 로고    scopus 로고
    • Electrophoretic collision of a DNA molecule with an insulating post
    • Randall GC, Doyle PS (2004) Electrophoretic collision of a DNA molecule with an insulating post. Phys Rev Lett 93:058102
    • (2004) Phys Rev Lett , vol.93 , pp. 058102
    • Randall, G.C.1    Doyle, P.S.2
  • 13
    • 0033537394 scopus 로고    scopus 로고
    • Collision of a field-driven polymer with a finite sized obstacle; a Brownian dynamics simulation
    • Saville PM, Sevick EM (1999) Collision of a field-driven polymer with a finite sized obstacle; a Brownian dynamics simulation. Macromolecules 32:892-899
    • (1999) Macromolecules , vol.32 , pp. 892-899
    • Saville, P.M.1    Sevick, E.M.2
  • 14
    • 0037203452 scopus 로고    scopus 로고
    • Brownian dynamics simulations of bead-rod and bead-spring chains: Numerical algorithms and coarse-graining issues
    • Somasi M, Khomami B, Woo NJ, Hur JS, Shaqfeh ESG (2002) Brownian dynamics simulations of bead-rod and bead-spring chains: Numerical algorithms and coarse-graining issues. J Non Newton Fluid Mech 108:227-255
    • (2002) J Non Newton Fluid Mech , vol.108 , pp. 227-255
    • Somasi, M.1    Khomami, B.2    Woo, N.J.3    Hur, J.S.4    Shaqfeh, E.S.G.5
  • 15
    • 0032139203 scopus 로고    scopus 로고
    • Single chain entanglement: A Monte Carlo simulation of dilute solution capillary electrophoresis
    • Starkweather ME, Muthukumar M, Hoagland DA (1998) Single chain entanglement: A Monte Carlo simulation of dilute solution capillary electrophoresis. Macromolecules 31:5495-5501
    • (1998) Macromolecules , vol.31 , pp. 5495-5501
    • Starkweather, M.E.1    Muthukumar, M.2    Hoagland, D.A.3
  • 16
    • 0026688439 scopus 로고
    • DNA electrophoresis in microlithographic arrays
    • Volkmuth WD, Austin RH (1992) DNA electrophoresis in microlithographic arrays. Nature 358:600-602
    • (1992) Nature , vol.358 , pp. 600-602
    • Volkmuth, W.D.1    Austin, R.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.