Brownian dynamics simulations with stiff finitely extensible nonlinear elastic-Fraenkel springs as approximations to rods in bead-rod models

Journal of Chemical Physics

Volumn 124, Issue 4, 2006, Pages

  Hsieh, Chih Chen ^a   Jain, Semant ^a   Larson, Ronald G ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTATION THEORY; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; POLYMERS; SHEAR FLOW;

BEAD-ROD MODELS; BROWNIAN DYNAMICS (BD) SIMULATIONS; PREDICTOR-CORRECTOR METHOD;

COMPUTERIZED TOMOGRAPHY;

EID: 31544456648     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2161210     Document Type: Article

References (37)

1. P. J. Flory, Statistical Mechanics of Chain Molecules (Oxford University Press, New York, 1988).
2. P. T. Underhill and P. S. Doyle, J. Rheol. 49, 963 (2005).
3. R. G. Larson, J. Rheol. 49, 1 (2005).
4. E. S. G. Shaqfeh, J. Non-Newtonian Fluid Mech. 130, 1 (2005).
5. N. J. Woo, E. S. G. Shaqfeh, and B. Khomami, J. Rheol. 48, 281 (2004).
6. H. A. Kramers, J. Chem. Phys. 14, 415 (1946).
7. J. M. Rallison, J. Fluid Mech. 93, 251 (1979).
8. R. B. Bird, C. F. Curtiss, R. C. Armstrong, and O. Hassager, Dynamics of Polymeric Liquids (Wiley-Interscience, New York, 1987), Vol. 2.
9. O. Hassager, J. Chem. Phys. 60, 2111 (1974).
10. M. Gottlieb and R. B. Bird, J. Chem. Phys. 65, 2467 (1976).
11. M. Fixman, J. Chem. Phys. 69, 1527 (1978).
12. E. J. Hinch, J. Fluid Mech. 271, 219 (1994).
13. A. Montesi, D. C. Morse, and M. Pasquali, J. Chem. Phys. 122, 084903 (2005).
14. S. A. Allison and J. A. McCammon, Biopolymers 23, 167 (1984).
15. W. T. Liu, J. Chem. Phys. 90, 5826 (1989).
16. H.-C. Öttinger, Phys. Rev. E 50, 2696 (1994).
17. P. S. Doyle, E. S. G. Shaqfeh, and A. P. Gast, J. Fluid Mech. 334, 251 (1997).
18. J. S. Hur, E. S. G. Shaqfeh, and R. G. Larson, J. Rheol. 44, 713 (2000).
19. J. P. Ryckaert, G. Ciccotti, and H. J. Berendsen, J. Comput. Phys. 23, 327 (1977).
20. P. S. Grassia and E. J. Hinch, J. Fluid Mech. 282, 373 (1995).
21. E. A. J. F. Peters, Ph.D. thesis, Delft University of Technology., 2000.
22. D. C. Morse, Adv. Chem. Phys. 128, 65 (2004).
23. U. S. Agarwal, R. Bhargava, and R. A. Mashelkar, J. Chem. Phys. 108, 1610 (1998).
24. U. S. Agarwal, J. Chem. Phys. 113, 3397 (2000).
25. A. V. Lyulin, D. B. Adolf, and G. R. Davies, J. Chem. Phys. 111, 758 (1999).
26. I. M. Neelov, D. B. Adolf, A. V. Lyulin, and G. R. Davies, J. Chem. Phys. 117, 4030 (2002).
27. D. Petera and M. Muthukumar, J. Chem. Phys. 111, 7614 (1999).
28. S. Liu, B. Ashok, and M. Muthukumar, Polymer 45, 1383 (2004).
29. D. L. Ermak and J. A. McCammon, J. Chem. Phys. 69, 1352 (1978).
30. J. Rotne and S. Prager, J. Chem. Phys. 50, 4831 (1969).
31. H. Yamakawa, J. Chem. Phys. 51, 436 (1970).
32. C. -C. Hsieh, L. Li, and R. G. Larson, J. Non-Newtonian Fluid Mech. 113, 141 (2003).
33. M. Fixman, Macromolecules 19, 1195 (1986).
34. R. M. Jendrejack, M. D. Graham, and J. J. de Pablo, J. Chem. Phys. 113, 2894 (2000).
35. H.-C. Öttinger, Stochastic Processes in Polymeric Fluids (Springer, Berlin, 1996).
36. M. Somasi, B. Khomami, N. J. Woo, J. S. Hur, and E. S. G. Shaqfeh, J. Non-Newtonian Fluid Mech. 108, 2275 (2002).
37. M. Herrchen and H.-C. Öttinger, J. Non-Newtonian Fluid Mech. 68, 17 (1997).