Succession of microbiota estimated by phospholipid fatty acid analysis and changes in organic constituents during the composting process of rice straw

Soil Science and Plant Nutrition

Volumn 48, Issue 5, 2002, Pages 735-743

  Cahyani, Vita Ratri ^a   Watanabe, Akira ^a   Asakawa, Susumu ^a   Kimura, Makoto ^a   Matsuya, Kazuo ^b  

^a NAGOYA UNIVERSITY   (Japan)

^b AICHI PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Compost; Microbial community; Phospholipid fatty acid; Proximate analysis; Rice straw

Indexed keywords

CELLULOSE; FATTY ACID; LIPID; ORGANIC MATTER;

CARBON NITROGEN RATIO; COMMUNITY SUCCESSION; COMPOSTING; CONCENTRATION (PARAMETERS); DAY LENGTH; DEVELOPMENTAL STAGE; FATTY ACID ANALYSIS; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; MICROBIAL BIOMASS; MICROBIAL POPULATION DYNAMICS; RICE; STRAW;

EID: 0036803666     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1080/00380768.2002.10409264     Document Type: Article

References (42)

1. Anderson JPE and Domsch KH 1980: Quantities of plant nutrients in the microbial biomass of selected soils. Soil Sci., 130,211-216
2. Aoki S 1996: http://aoki2.si.gunma-u.ac.jp/BlackBoxlBlack Box.html
3. Arao T, Okano S, and Kanamori T 1998: Analysis of the phospholipid fatty acids of upland light colored Andosol and the relationship among the size of biomass based on phospholipid fatty acid analysis, microscopical counts and chloroform fumigation-incubation. Jpn. J. Soil Sci. Plant Nutr., 69, 38-46 (in Japanese with English summary)
4. Balkwill DL, Leach FR, Wilson JT, McNabb JF, and White DC 1988: Equivalence of microbial biomass based on membrane lipid and cell wall components. adenosine triphosphate and direct counts in subsurface aquifer sediments. Microb. Ecol., 16. 73-84
5. Beffa T, Blanc M, and Aragno M 1996: Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bactelia isolated from hot composts. Arch. Microbiol., 165,34-40
6. Bernal MP, Navarro AF, Roig A, Cegarra J. and Garcia D 1996: Carbon and nitrogen transformation during composting of sweet sorghum bagasse. Biol. Fertil. Soils, 22,141-148
7. Bligh EG and Dyer WI 1959: A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol., 37, 911-917
8. Borga P, Nilsson M, and Tunlid A 1994: Bacterial communities in peat in relation to botanical composition as revealed by phospholipid fatty acid analysis. Soil Biol. Biochem., 26, 841-848
9. Bossio DA and Scow KM 1998: Impacts of carbon and flooding on soil microbial communities: Phospholipid fatty acid profiles and substrate utilization patterns. Microb. Ecol., 35, 265-278
10. Devevre OC and Horwath WR 2000: Decomposition of rice straw and microbial carbon use efficiency under different soil temperature and moistures. Soil Biol. Biochem., 32, 1773-1785
11. Eiland F, Leth M, Klamer M, Lind AM, Jensen HEK, and Iversen JJL 2001: C and N turnover and lignocellulose degradation during composting of Miscanthlls straw and liquid pig manure. Compost Sci. Util., 9, 186-196
12. Frostegiird A, Petersen SO, Baath E, and Nielsen TH 1997: Dynamics of a microbial community associated with manure hot spots as revealed by phospholipid fatty acid analyses. Appl. Environ. Microbial., 63, 2224-2231
13. Frostegiird A, Tunlid A, and Baath E 1993: Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl. Environ. Microbial. 59, 3605-3617
14. Frostegard A, Tunlid A, and Baath E 1996: Changes in microbial community structure during long-term incubation in two soils experimentally contaminated with metals. Soil Biol. Biochen z., 28, 55-63
15. Guckert JB, Antworth CP, Nichols PD. and White DC 1985: Phospholipid. ester-linked fatty acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbial. Ecol., 31, 147-158
16. Haack SK, Garchow H, Odelson DA, Forney LJ. and Klug MJ 1994: Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl. Environ. Microbial., 60. 2483-2493
17. Hellmann B, Zclles L, Palojarvi A, and Bai Q 1997: Emission of climate-relevant trace gases and succession of microbial communities during open-windrow composting. Appl. Environ. Microbial., 63,1011-1018
18. Herrmann RF and Shann JF 1997: Microbial community changes during composting of municipal solid waste. Microb. Ecol., 33, 78-85
19. Inoko A 1984: Compost as a source of plant nutrients. In Organic Matter and Rice, p. 137-145, IRRI, Los Banos
20. Kimura M, Miyaki M, Fujinaka K, and Maie N 2001: Microbiota responsible for the decomposition of rice straw in a submerged paddy soil estimated from phospholipid fatty acid composition. Soil Sci. Plant Nutr., 47, 569-578
21. Kimura M and Tun CC 1999: Microscopic observation of the decomposition process of leaf sheath of rice straw and colonizing microorganisms during the cultivation period of paddy rice. Soil Sci. Plant Nutr:. 45. 427-437
22. Klamer M and Baath E 1998: Microbial community dynamic during compo sting of straw material studied using phospholipid fatty acid analysis. FEMS Microbiol. Ecol., 27, 9-20
23. Kroppenstedt RM 1992: The genus Nocardiopsis. In The Prokaryotes, Vol. 2. Ed. A Balows, HG Triiper. M Dworkin, W Harder, and KH Schleifer. p. 1139-1156. Springer, Berlin
24. Lei F and VanderGheynst JS 2000: The effect of microbial inoculation and pH on microbial community structure changes during composting. Process Biochem., 35, 923-929
25. Leita L, De Nobili M, Mondini C, Mulbachova G, Marchiol L, Bragato G, and Contin M 1999: Influence of inorganic and organic fertilization on soil microbial biomass, metabolic quotient and heavy metal bioavailability. Biol. Fertil. Soils, 28, 371-376
26. Miller RW and Donahue RL 1990: Soils. An Introduction to Soils and Plant Growth, 6th ed., 768 pp., Prentice-Hall International, Inc., Englewood Cliffs
27. Nakasaki K, Sasaki M, Shoda M. and Kubota H 1985: Change in microbial numbers during thermophilic compo sting of sewage sludge with reference to CO" evolution rate. Appl. Environ. Microbial., 49. 37-41
28. Okabe A, Toyota K, and Kimura M 2000: Seasonal variations of phospholipid fatty acid composition in the floodwater of a Japanese paddy field under a long-term fertilizer trial. Soil Sci. Plant Nutr., 46, 177 -188
29. Paredes C, Roig A, Bernal MP, Sanchez-Monedero MA, and Cegarra J 2000: Evolution of organic matter and nitrogen during co-composting of olive mill waste water with solid organic wastes. Biol. Fertil. Soils, 32, 222-227
30. Poincelot RP 1972: Biochemistry and methodology of composting. Connecticut Agric. Exp. Stn. Bull., 727, 4-38
31. Ratledge C and Wilkinson SG 1988: Microbial Lipids, Vol. 1, p. 23-29, 117-457,699-794, Academic Press, London
32. Reichardt W, Mascarina G, Padre B, and Doll L 1997: Microbial communities of continuously cropped, irrigated rice fields. Appl. Environ. Microbial., 63. 233-238
33. Stevenson FJ 1965: Gross chemical ti'actionation of organic matter. III Methods of Soil Analysis, Part 2, Chemical and Microbiological Properties, Ed. CA Black, DD Evans, LE Ensminger. JL White, and FE Clark, p. 1409-142 J. The American Society of Agronomy, Inc., Madison. WI
34. Strom PF 1985a: Effect of temperature on bacterial species diversity in thern10philic solid-waste composting. Appl. Environ. Microbial. 50, 899-905
35. Strom PF 1985b: Identification of thermophilic bacteria in solidwaste composting. Appl. Environ. Microbial., 50, 906-913
36. Tsutsuki K and POlmamperuma FN 1987: Behaviour of anaerobic decomposition products in submerged soils. Effects of organic material amendment. soil properties, and temperature. Soil Sci. Plant Nutr., 33, 13-33
37. Tun CC and Kimura M 2000: Microscopic observation of the decomposition process of leaf blade of rice straw and colonizing microorganisms in a Japanese paddy field soil during the cultivation period of paddy rice. Soil Sci. Plant Nutr., 46,127-137
38. Vestal JR and White DC 1989: Lipid analysis in microbial ecology. Quantitative approaches to the study of microbial communities. BioScience, 39.535-541
39. Waksman SA and Stevens KR 1930: A critical study of the methods for determining the nature and abundance of soil organic matter. Soil Sci., 30. 97-116
40. Watanabe A, Katoh K, and Kimura M 1993: Effect of rice straw application on CH4 emission from paddy fields. II. Contribution of organic constituents in rice straw. Soil Sci. Plant Nutr., 39. 707 - 712
41. White DC, Davis WM, Nickels JS, King JD. and Bobbie RJ 1979: Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia, 40. 51-62
42. Zelles L 1999: Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: A review. Biol. Fertil. Soils, 29, 111-129