Spike correlations in a songbird agree with a simple markov population model

PLoS Computational Biology

Volumn 3, Issue 12, 2007, Pages 2520-2531

  Weber, Andrea P ^a   Hahnloser, Richard H R ^a  

^a Institute of Neuroinformatics Zurich   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN; MARKOV PROCESSES;

COLLECTIVE BEHAVIOUR; NETWORK DYNAMICS; NEURAL ACTIVITY; NEURAL CODE; POPULATION ACTIVITIES; POPULATION LEVELS; POPULATION MODEL; SENSORY SYSTEM; SIMPLE++; SINGLE CELLS;

NEURONS;

ARTICLE; BEHAVIORAL SCIENCE; CELL ACTIVITY; MOTOR SYSTEM; NERVE CELL; POPULATION DYNAMICS; POPULATION MODEL; SINGING; SLEEP; SONGBIRD; SPIKE WAVE; ACTION POTENTIAL; ALGORITHM; ANIMAL; BIOLOGICAL MODEL; BIOLOGICAL RHYTHM; BRAIN; COMPUTER SIMULATION; NERVE CELL NETWORK; PHYSIOLOGY; PROBABILITY; STATISTICAL MODEL; STATISTICS; SYNAPTIC TRANSMISSION; VOCALIZATION;

PASSERI; TAENIOPYGIA GUTTATA;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; BIOLOGICAL CLOCKS; BRAIN; COMPUTER SIMULATION; MARKOV CHAINS; MODELS, NEUROLOGICAL; MODELS, STATISTICAL; NERVE NET; NEURONS; SLEEP; SONGBIRDS; STATISTICS AS TOPIC; SYNAPTIC TRANSMISSION; VOCALIZATION, ANIMAL;

EID: 37849031583     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.0030249     Document Type: Article

References (31)

1. Hahnloser R, Kozhevnikov A, Fee MS (2002) An ultrasparse code underlies the generation of neural sequences in a songbird. Nature 419: 65-70.
2. Luczak A, Bartho P, Marguet SL, Buzsaki G, Harris KD (2007) Sequential structure of neocortical spontaneous activity in vivo. Proc Natl Acad Sci U S A 104: 347-352.
3. Kenet T, Bibitchkov D, Tsodyks M, Grinvald A, Arieli A (2003) Spontaneously emerging cortical representations of visual attributes. Nature 425: 954-956.
4. Dave AS, Margoliash D (2000) Song replay during sleep and computational rules for sensorimotor vocal learning. Science 290: 812-816.
5. Louie K, Wilson MA (2001) Temporally structured replay of awake hippocampal ensemble activity during rapid eye movement sleep. Neuron 29: 145-156.
6. Tsodyks M, Kenet T, Grinvald A, Arieli A (1999) Linking spontaneous activity of single cortical neurons and the underlying functional architecture. Science 286: 1943-1946.
7. Dan Y, Alonso JM, Usrey WM, Reid RC (1998) Coding of visual information by precisely correlated spikes in the lateral geniculate nucleus. Nat Neurosci 1: 501-507.
8. Hatsopoulos NG, Paninski L, Donoghue JP (2003) Sequential movement representations based on correlated neuronal activity. Exp Brain Res 149: 478-486.
9. Schneidman E, Berry MJ Jr, Segev R, Bialek W (2006) Weak pairwise correlations imply strongly correlated network states in a neural population. Nature 440: 1007-1012.
10. Leonardo A, Fee MS (2005) Ensemble coding of vocal control in birdsong. J Neuroscience 19: 652-661.
11. Kozhevnikov A, Fee MS (2006) Singing-related activity of identified HVC neurons in the zebra finch. J Neurophysiol 97: 4271-4283.
12. Hahnloser HR, Kozhevnikov AA, Fee MS (2006) Sleep-related neural activity in a premotor and a basal-ganglia pathway of the songbird. J Neurophysiol 96: 794-812.
13. Dave AS, Yu AC, Margoliash D (1998) Behavioral state modulation of auditory activity in a vocal motor system. Science 282: 2250-2254.
14. Jin DZ, Ramazanoglu FM, Seung HS (2007) Intrinsic bursting enhances the robustness of a neural network model of sequence generation by avian brain area HVC. J Comput Neurosci 23: 283-299.
15. Fee MS, Kozhevnikov AA, Hahnloser RH (2004) Neural mechanisms of vocal sequence generation in the songbird. Ann N Y Acad Sci 1016: 153-170.
16. Deppisch J, Pawelzik K, Geisel T (1994) Uncovering the synchronization dynamics from correlated neuronal activity quantifies assembly formation. Biol Cybern 71: 387-399.
17. Danoczy M, Hahnloser HR (2005) Efficient estimation of hidden state dynamics from spike trains. Neural Inf Process Syst (NIPS) 18. Available: http://books.nips.cc/papers/files/nips18/NIPS2005_0482.pdf. Accessed 16 November 2007.
18. Yu BM, Afshar A, Snathanam G, Ryu SI, Shenoy KV, et al. (2005) Extracting dynamical structure embedded in neural activity. Neural Inf Process Syst (NIPS) 18. Available: http://www.stanford.edu/;shenoy/GroupPublications/ YuEtAlNIPS2005.pdf. Accessed 19 November 2007.
19. Truccolo W, Eden UT, Fellows MR, Donoghue JP, Brown EN (2005) A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects. J Neurophysiol 93: 1074-1089.
20. Brown EN, Barbieri R, Ventura V, Kass RE, Frank LM (2002) The time-rescaling theorem and its application to neural spike train data analysis. Neural Comput 14: 325-346.
21. Rosen MJ, Mooney R (2006) Synaptic interactions underlying song-selectivity in the avian nucleus HVC revealed by dual intracellular recordings. J Neurophysiol 95: 1158-1175.
22. Mooney R, Prather JF (2005) The HVC microcircuit: the synaptic basis for interactions between song motor and vocal plasticity pathways. J Neurosci 25: 1952-1964.
23. Hahnloser RH, Fee MS (2007) Sleep-related spike bursts in HVC are driven by the nucleus interface of the nidopallium. J Neurophysiol 97: 423-435.
24. Hahnloser RH (2007) Cross-intensity functions and the estimate of spike-time jitter. Biol Cybern 96: 497-506.
25. Glaze CM, Troyer TW (2006) Temporal structure in zebra finch song: implications for motor coding. J Neurosci 26: 991-1005.
26. Mazor O, Laurent G (2005) Transient dynamics versus fixed points in odor representations by locust antennal lobe projection neurons. Neuron 48: 661-673.
27. Rabinovich M, Volkovskii A, Lecanda P, Huerta R, Abarbanel HD, et al. (2001) Dynamical encoding by networks of competing neuron groups: winnerless competition. Phys Rev Lett 87: 068102.
28. Hinton GE, Dayan P, Frey BJ, Neal RM (1995) The "wake-sleep" algorithm for unsupervised neural networks. Science 268: 1158-1161.
29. Deregnaucourt S, Mitra PP, Feher O, Pytte C, Tchernichovski O (2005) How sleep affects the developmental learning of bird song. Nature 433: 710-716.
30. Walker MP, Stickgold R (2006) Sleep, memory, and plasticity. Annu Rev Psychol 57: 139-166.
31. Spiro JE, Dalva MB, Mooney R (1999) Long-range inhibition within the zebra finch song nucleus RA can coordinate the firing of multiple projection neurons. J Neurophysiol 81: 3007-3020.