MicroRNA-183 family conservation and ciliated neurosensory organ expression

Evolution and Development

Volumn 10, Issue 1, 2008, Pages 106-113

  Pierce, Marsha L ^a   Weston, Michael D ^a   Fritzsch, Bernd ^a   Gabel, Harrison W ^b,c   Ruvkun, Gary ^b,c   Soukup, Garrett A ^a  

^a CREIGHTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

CELL ORGANELLE; CILIATE; CONSERVATION; GENOME; METAZOAN; ORIGIN OF LIFE; PHYLOGENETICS; RNA;

ANIMAL; ARTICLE; CHEMISTRY; COMPARATIVE STUDY; CYTOLOGY; EPITHELIUM CELL; EUKARYOTIC FLAGELLUM; GENETICS; HUMAN; IN SITU HYBRIDIZATION; INVERTEBRATE; METABOLISM; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; SENSE ORGAN; SEQUENCE ALIGNMENT; SYNTENY; VERTEBRATE;

ANIMALS; CILIA; CONSERVED SEQUENCE; EPITHELIAL CELLS; EVOLUTION, MOLECULAR; HUMANS; IN SITU HYBRIDIZATION; INVERTEBRATES; MICRORNAS; PHYLOGENY; SENSE ORGANS; SEQUENCE ALIGNMENT; SYNTENY; VERTEBRATES;

CAENORHABDITIS ELEGANS; DEUTEROSTOMIA; INVERTEBRATA; METAZOA; PROTOSTOMIA; VERTEBRATA;

EID: 37749013105     PISSN: 1520541X     EISSN: 1525142X     Source Type: Journal    
DOI: 10.1111/j.1525-142X.2007.00217.x     Document Type: Article

References (57)

1. Aboobaker, A. A., Tomancak, P., Patel, N., Rubin, G. M. Lai, E. C. 2005. Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development. Proc Natl Acad Sci USA 102 : 18017 18022.
2. Altun, Z. F. Hall, D. H. 2005. WormAtlas
3. Ason, B., et al. 2006. Differences in vertebrate microRNA expression. Proc Natl Acad Sci USA 103 : 14385 14389.
4. Bermingham, N. A., et al. 1999. Math1: an essential gene for the generation of inner ear hair cells. Science 284 : 1837 1841.
5. Bermingham-McDonogh, O., Oesterle, E. C., Stone, J. S., Hume, C. R., Huynh, H. M. Hayashi, T. 2006. Expression of Prox1 during mouse cochlear development. J Comp Neurol 496 : 172 186.
6. Boekhoff-Falk, G. 2005. Hearing in Drosophila: development of Johnston's organ and emerging parallels to vertebrate ear development. Dev Dyn 232 : 550 558.
7. Bullock, T. H. Horridge, G. A. 1965. Structure and Function in the Nervous Systems of Invertebrates. Freeman & Company, San Francisco.
8. Burke, R. D., et al. 2006. A genomic view of the sea urchin nervous system. Dev Biol 300 : 434 460.
9. Chen, C. Z., Li, L., Lodish, H. F. Bartel, D. P. 2004. MicroRNAs modulate hematopoietic lineage differentiation. Science 303 : 83 86.
10. Czerny, T., Bouchard, M., Kozmik, Z. Busslinger, M. 1997. The characterization of novel Pax genes of the sea urchin and Drosophila reveal an ancient evolutionary origin of the Pax2/5/8 subfamily. Mech Dev 67 : 179 192.
11. Dahl, E., Koseki, H. Balling, R. 1997. Pax genes and organogenesis. Bioessays 19 : 755 765.
12. Darnell, D. K., Kaur, S., Stanislaw, S., Konieczka, J. H., Yatskievych, T. A. Antin, P. B. 2006. MicroRNA expression during chick embryo development. Dev Dyn 235 : 3156 3165.
13. Dehal, P., et al. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298 : 2157 2167.
14. Dupuy, D., et al. 2004. A first version of the Caenorhabditis elegans Promoterome. Genome Res 14 : 2169 2175.
15. Engels, B. M. Hutvagner, G. 2006. Principles and effects of microRNA-mediated post-transcriptional gene regulation. Oncogene 25 : 6163 6169.
16. Farinas, I., et al. 2001. Spatial shaping of cochlear innervation by temporally regulated neurotrophin expression. J Neurosci 21 : 6170 6180.
17. Fritzsch, B., Beisel, K., Pauley, S. Soukup, G. A. 2007. Molecular Evolution of the vertebrate mechanosensory cell and ear. Int J Dev Biol 51 : 663 678.
18. Fritzsch, B., et al. 2005. Atoh1 null mice show directed afferent fiber growth to undifferentiated ear sensory epithelia followed by incomplete fiber retention. Dev Dyn 233 : 570 583.
19. Fritzsch, B., Pauley, S. Beisel, K. W. 2006. Cells, molecules and morphogenesis: the making of the vertebrate ear. Brain Res 1091 : 151 171.
20. Fritzsch, B. Piatigorsky, J. 2004. Ancestry of photic and mechanic sensation? Science 308 : 1113 1114.
21. Garzon, R., Fabbri, M., Cimmino, A., Calin, G. A. Croce, C. M. 2006. MicroRNA expression and function in cancer. Trends Mol Med 12 : 580 587.
22. Gehring, W. J. 2005. New perspectives on eye development and the evolution of eyes and photoreceptors. J Hered 96 : 171 184.
23. Giraldez, A. J., et al. 2005. MicroRNAs regulate brain morphogenesis in zebrafish. Science 308 : 833 838.
24. Goodson, H. V. Dawson, S. C. 2006. Multiplying myosins. Proc Natl Acad Sci USA 103 : 3498 3499.
25. Griffiths-Jones, S., Grocock, R. J., van Dongen, S., Bateman, A. Enright, A. J. 2006. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34 : D140 D144.
26. Gupta, B. P. Rodrigues, V. 1997. Atonal is a proneural gene for a subset of olfactory sense organs in Drosophila. Genes Cells 2 : 225 233.
27. Hallbook, F., Wilson, K., Thorndyke, M. Olinski, R. P. 2006. Formation and evolution of the chordate neurotrophin and Trk receptor genes. Brain Behav Evol 68 : 133 144.
28. Harfe, B. D., McManus, M. T., Mansfield, J. H., Hornstein, E. Tabin, C. J. 2005. The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb. Proc Natl Acad Sci USA 102 : 10898 10903.
29. Harris, K. S., Zhang, Z., McManus, M. T., Harfe, B. D. Sun, X. 2006. Dicer function is essential for lung epithelium morphogenesis. Proc Natl Acad Sci USA 103 : 2208 2213.
30. Hasson, T., Heintzelman, M. B., Santos-Sacchi, J., Corey, D. P. Mooseker, M. S. 1995. Expression in cochlea and retina of myosin VIIa, the gene product defective in Usher syndrome type 1B. Proc Natl Acad Sci USA 92 : 9815 9819.
31. Hobert, O. 2002. PCR fusion-based approach to create reporter gene constructs for expression analysis in transgenic C. elegans. Biotechniques 32 : 728 730.
32. Jarman, A. P., Grau, Y., Jan, L. Y. Jan, Y. N. 1993. Atonal is a proneural gene that directs chordotonal organ formation in the Drosophila peripheral nervous system. Cell 73 : 1307 1321.
33. Jarman, A. P., Sun, Y., Jan, L. Y. Jan, Y. N. 1995. Role of the proneural gene, atonal, in formation of Drosophila chordotonal organs and photoreceptors. Development 121 : 2019 2030.
34. Kanellopoulou, C., et al. 2005. Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev 19 : 489 501.
35. Kavaler, J., Fu, W., Duan, H., Noll, M. Posakony, J. W. 1999. An essential role for the Drosophila Pax2 homolog in the differentiation of adult sensory organs. Development 126 : 2261 2272.
36. Kim, S. K., et al. 2001. A gene expression map for Caenorhabditis elegans. Science 293 : 2087 2092.
37. Kloosterman, W. P. Plasterk, R. H. 2006. The diverse functions of microRNAs in animal development and disease. Dev Cell 11 : 441 450.
38. Kloosterman, W. P., Wienholds, E., de Bruijn, E., Kauppinen, S. Plasterk, R. H. 2006. In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes. Nat Methods 3 : 27 29.
39. Kozmik, Z., et al. 2003. Role of Pax genes in eye evolution: a cnidarian PaxB gene uniting Pax2 and Pax6 functions. Dev Cell 55 : 773 785.
40. Lagos-Quintana, M., Rauhut, R., Yalcin, A., Meyer, J., Lendeckel, W. Tuschl, T. 2002. Identification of tissue-specific microRNAs from mouse. Curr Biol 12 : 735 739.
41. Lim, L. P., et al. 2005. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433 : 769 773.
42. Lowe, C. J., et al. 2003. Anteroposterior patterning in hemichordates and the origins of the chordate nervous system. Cell 113 : 853 865.
43. Matei, V., et al. 2005. Smaller inner ear sensory epithelia in Neurog 1 null mice are related to earlier hair cell cycle exit. Dev Dyn 234 : 633 650.
44. Modamio-Hoybjor, S., et al. 2004. A novel locus for autosomal dominant nonsyndromic hearing loss, DFNA50, maps to chromosome 7q32 between the DFNB17 and DFNB13 deafness loci. J Med Genet 41 : e14.
45. Pauley, S., Lai, E. Fritzsch, B. 2006. Foxg1 is required for morphogenesis and histogenesis of the mammalian inner ear. Dev Dyn 235 : 2470 2482.
46. Pfeffer, P. L., Gerster, T., Lun, K., Brand, M. Busslinger, M. 1998. Characterization of three novel members of the zebrafish Pax2/5/8 family: dependency of Pax5 and Pax8 expression on the Pax2.1 (noi) function. Development 125 : 3063 3074.
47. Prochnik, S. E., Rokhsar, D. S. Aboobaker, A. A. 2007. Evidence for a microRNA expansion in the bilaterian ancestor. Dev Genes Evol 217 : 73 77.
48. Sempere, L. F., Cole, C. N., McPeek, M. A. Peterson, K. J. 2006. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zool B Mol Dev Evol 306 : 575 588.
49. Sodergren, E., et al. 2006. The genome of the sea urchin Strongylocentrotus purpuratus. Science 314 : 941 952.
50. Stocker, R. F. 1994. The organization of the chemosensory system in Drosophila melanogaster: a review. Cell Tissue Res 275 : 3 26.
51. Todi, S. V., Franke, J. D., Kiehart, D. P. Eberl, D. F. 2005. Myosin VIIA defects, which underlie the Usher 1B syndrome in humans, lead to deafness in Drosophila. Curr Biol 15 : 862 868.
52. van Heyningen, V. Williamson, K. A. 2002. PAX6 in sensory development. Hum Mol Genet 11 : 1161 1167.
53. Wang, Y., Medvid, R., Melton, C., Jaenisch, R. Blelloch, R. 2007. DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal. Nat Genet 39 : 380 385.
54. Weston, M. D., Pierce, M. L., Rocha-Sanchez, S., Beisel, K. W. Soukup, G. A. 2006. MicroRNA gene expression in the mouse inner ear. Brain Res 1111 : 95 104.
55. Wienholds, E., et al. 2005. MicroRNA expression in zebrafish embryonic development. Science 309 : 310 301.
56. Wolfrum, U., Liu, X., Schmitt, A., Udovichenko, I. P. Williams, D. S. 1998. Myosin VIIa as a common component of cilia and microvilli. Cell Motil Cytoskeleton 40 : 261 271.
57. Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31 : 3406 3415.