Molecular cloning of ribosomal protein L26 (RPL26) cDNA from Ailuropoda melanoleuca and its potential value in phylogenetic study

Biochemical Systematics and Ecology

Volumn 36, Issue 3, 2008, Pages 194-200

  Hou, Wan ru ^a   Sun, Genlou ^b   Chen, Yu ^a   Wu, Xia ^a   Peng, Zheng song ^a   Zhou, Caiquan ^a  

^a CHINA WEST NORMAL UNIVERSITY   (China)

^b SAINT MARY S UNIVERSITY   (Canada)

Author keywords

Ailuropoda melanoleuca; Gene cloning; Phylogeny; Ribosomal protein L26 (RPL26); Sequence analysis

Indexed keywords

AMINO ACID; BEAR; MOLECULAR ANALYSIS; PHYLOGENETICS; PHYLOGENY; POLYMERASE CHAIN REACTION; PROTEIN; TAXONOMY;

AILUROPODA MELANOLEUCA; INVERTEBRATA; VERTEBRATA;

EID: 37649011442     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2007.08.010     Document Type: Article

References (27)

1. Amsterdam A., Sadler K.C., Lai K., Farrington S., Bronson R.T., Lees J.A., and Hopkins N. Many ribosomal protein genes are cancer genes in zebrafish. PloS Biol. 2 (2004) 690-698
2. Carninci P., and Hayashizaki Y. High-efficiency full-length cDNA cloning. Methods Enzymol. 303 (1999) 19-44
3. Dai M.S., and Lu H. Inhibition of MDM2-mediated p53 ubiquitination and degradation by ribosomal protein L5. J. Biol. Chem. 279 (2004) 44475-44482
4. Draper D.E., and Reynaldo L.P. RNA binding strategies of ribosomal proteins. Nucleic Acids Res. 27 2 (1999) 381-388
5. Farias I.P., Ortl G., Sampaio I., Schneider H., and Meyer A. The cytochrome b gene as a phylogenetic marker: the limits of resolution for analyzing relationships among cichlid fishes. J. Mol. Evol. 53 2 (2001) 89-103
6. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
7. Ishii K., Washio T., Uechi T., Yoshihama M., Kenmochi N., and Tomita M. Characteristics and clustering of human ribosomal protein genes. BMC Genomics 7 (2006) 37-53
8. Ishiwata H., Katsuma S., Kizaki K., Patel O.V., Nakano H., Takahashi T., Imai K., Hirasawa A., Shiojima S., Ikawa H., Suzuki Y., Tsujimoto G., Izaike Y., Todoroki J., and Hashizume K. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Mol. Reprod. Dev. 65 1 (2003) 9-18
9. Kimura M. Estimation of evolutionary distances between homologous nucleotide sequences. Proc. Natl. Acad. Sci. U.S.A. 78 (1981) 454-458
10. Larade K., Nimigan A., and Storey K.B. Transcription pattern of ribosomal protein L26 during anoxia exposure in Littorina littorea. J. Exp. Zool. 290 (2001) 759-768
11. Li L., and Fallon A.M. Recovery of cDNAs encoding ribosomal protein S9 and L26 from Aedes albopictus mosquito cells and identification of their homologs in the malaria vector, Anopheles gambiae. Arch. Insect Biochem. Physiol. 60 (2005) 44-53
12. Lu Z., Johnson W.E., Menotti-Raymond M., Yuhki N., Martenson J.S., Mainka S., Huang S.Q., Zheng Z., Li G., Pan W., Mao X., and O'Brien S.J. Patterns of genetic diversity in remaining giant panda populations. Conserv. Biol. 15 (2001) 1596-1607
13. Mager W.H. Control of ribosomal protein gene expression. Biochim. Biophys. Acta 949 (1988) 1-15
14. Matte-Tailliez O., Brochier C., Forterre P., and Philippe H. Archaeal phylogeny based on ribosomal proteins. Mol. Biol. Evol. 19 (2002) 631-639
15. Metzenberg S., Joblet C., Verspieren P., and Agabian N. Ribosomal protein L25 from Trypanosoma brucei: phylogeny and molecular co-evolution of an rRNA-binding protein and its rRNA binding site. Nucleic Acids Res. 21 21 (1993) 4936-4940
16. Paz V., Olvera J., Chan Y.L., and Wool I.G. The primary structure of rat ribosomal protein L26. FEBS Lett. 251 1-2 (1989) 89-93
17. Philippe H., and Germot A. Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution. Mol. Biol. Evol. 17 5 (2000) 830-834
18. Saitou N., and Nei M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. J. Mol. Evol. 4 (1987) 406-425
19. Shang X., He Y., Zhang L., He C.J., Xia L.X., Gao S., Guo Y.Q., Shang X., He Y., Cheng H.H., and Zhou R.J. Ribosomal protein genes highly expressed in swamp eel gonads. Hereditas (Beijing) 27 2 (2005) 227-230
20. Sogin M.L. Early evolution and the origin of eukaryotes. Curr. Opin. Genet. Dev. 1 4 (1991) 457-463
21. Swofford D.L. PAUP: Phylogenetic Analysis Using Parsimony, Version 4 beta 10 Win (2002), Sinauer Press, Sunderland, MA, USA
22. Thompson J.D., Gibson T.J., Plewniak F., Jeanmouguin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
23. Villarreal Jr. J., and Lee J.C. Yeast ribosomal protein L26 is located at the ribosomal subunit interface as determined by chemical cross-linking. Biochimie 80 (1998) 321-324
24. Ward P., and Kynaston S. Bears of the World (1995), Blandford, London
25. Yoshihama M., Uechi T., Asakawa S., Kawasaki K., Kato S., Higa S., Maeda N., Minoshima S., Tanaka T., Shimizu N., and Kenmochi N. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. Genome Res. 12 3 (2002) 379-390
26. Zaman G.J. Sequence of a cDNA encoding human ribosomal protein L26 and of a cDNA probably encoding human ribosomal protein L6. Nucleic Acids Res. 21 7 (1993) 1673
27. Zeng J.Z., Hong Y., Wang H.Y., Wang Z.X., Chen Z.J., and Wu M.Z. Cloning and expression of ribosomal protein L26 in hepatocellular carcinoma. China J. Exp. Surg. 18 2 (2001) 108-109