메뉴 건너뛰기




Volumn 17, Issue 4, 2007, Pages 433-443

A method for HLA genotyping using the specific cleavage of DNA-rN 1-DNA/DNA with RNase HII from Chlamydia pneumoniae

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL ENZYME; DNA FRAGMENT; DOUBLE STRANDED DNA; RIBONUCLEASE H; RIBONUCLEASE HII; RIBONUCLEOTIDE; SINGLE STRANDED DNA; SOLVENT; UNCLASSIFIED DRUG;

EID: 37549069324     PISSN: 15454576     EISSN: None     Source Type: Journal    
DOI: 10.1089/oli.2007.0090     Document Type: Article
Times cited : (2)

References (28)
  • 2
    • 0032997217 scopus 로고    scopus 로고
    • The essence of SNPs
    • BROOKES, A.J. (1999). The essence of SNPs. Gene 234, 177-186.
    • (1999) Gene , vol.234 , pp. 177-186
    • BROOKES, A.J.1
  • 3
    • 0028334278 scopus 로고
    • MutS binding protects heteroduplex DNA from exonuclease digestion in vitro: A simple method for detecting mutations
    • ELLIS, L.A., TAYLOR, G.R., BANKS, R., and BAUMBERG, S. (1994). MutS binding protects heteroduplex DNA from exonuclease digestion in vitro: a simple method for detecting mutations. Nucleic Acids Res. 22, 2710-2711.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2710-2711
    • ELLIS, L.A.1    TAYLOR, G.R.2    BANKS, R.3    BAUMBERG, S.4
  • 4
    • 0034113855 scopus 로고    scopus 로고
    • Detection of novel NF2 mutations by an RNA mismatch method
    • FAUDOA, R., XUE, Z., LEE, F., BASER, M.E., and HUNG, G. (2000). Detection of novel NF2 mutations by an RNA mismatch method. Hum. Mutat. 15, 474-478.
    • (2000) Hum. Mutat , vol.15 , pp. 474-478
    • FAUDOA, R.1    XUE, Z.2    LEE, F.3    BASER, M.E.4    HUNG, G.5
  • 5
    • 28544449472 scopus 로고    scopus 로고
    • The use of real-time PCR methods in DNA sequence variation analysis
    • GIBSON, N.J. (2006). The use of real-time PCR methods in DNA sequence variation analysis. Clin. Chim. Acta 363, 32-47.
    • (2006) Clin. Chim. Acta , vol.363 , pp. 32-47
    • GIBSON, N.J.1
  • 6
    • 0034871732 scopus 로고    scopus 로고
    • RNase cleavage-based methods for mutation/SNP detection, past and present
    • GOLDRICK, M.M. (2001). RNase cleavage-based methods for mutation/SNP detection, past and present. Hum. Mutat. 18, 190-204.
    • (2001) Hum. Mutat , vol.18 , pp. 190-204
    • GOLDRICK, M.M.1
  • 7
    • 0037032428 scopus 로고    scopus 로고
    • Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNses HII
    • HARUKI, M., TSUNAKA, Y., MORIKAWA, M., and KANAYA, S. (2002). Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNses HII. FEBS Lett. 531, 204-208.
    • (2002) FEBS Lett , vol.531 , pp. 204-208
    • HARUKI, M.1    TSUNAKA, Y.2    MORIKAWA, M.3    KANAYA, S.4
  • 8
    • 0025262223 scopus 로고
    • Kinetic analysis of Escherichia coli RNase H using DNA-RNA-DNA/DNA substrates
    • HOGREFE, H.H., HOGREFE, R.I., WALDER, R.Y., and WALDER, J.A. (1990). Kinetic analysis of Escherichia coli RNase H using DNA-RNA-DNA/DNA substrates. J. Biol. Chem. 265, 5561-5566.
    • (1990) J. Biol. Chem , vol.265 , pp. 5561-5566
    • HOGREFE, H.H.1    HOGREFE, R.I.2    WALDER, R.Y.3    WALDER, J.A.4
  • 9
    • 34047157664 scopus 로고    scopus 로고
    • RNase HII from Chlamydia pneumoniae discriminates mismatches incorporation into DNA-rN1-DNA/DNA duplexes
    • HOU, J., LIU, X., PEI, D., and LIU, J. (2007). RNase HII from Chlamydia pneumoniae discriminates mismatches incorporation into DNA-rN1-DNA/DNA duplexes. Biochem. Biophys. Res. Commun. 356, 988-992.
    • (2007) Biochem. Biophys. Res. Commun , vol.356 , pp. 988-992
    • HOU, J.1    LIU, X.2    PEI, D.3    LIU, J.4
  • 10
    • 0033018097 scopus 로고    scopus 로고
    • Heteroduplex cleavage analysis using S1 nuclease
    • HOWARD, J.T., WARD, J., WATSON, J.N., and ROUX, K.H. (1999). Heteroduplex cleavage analysis using S1 nuclease. Biotechniques 27, 18-19.
    • (1999) Biotechniques , vol.27 , pp. 18-19
    • HOWARD, J.T.1    WARD, J.2    WATSON, J.N.3    ROUX, K.H.4
  • 11
    • 27544510639 scopus 로고    scopus 로고
    • Detection of single-base mutations by fluorogenic ribonuclease protection assay
    • ICHINOSE, H., KITAOKA, M., OKAMURA, N., MARUYAMA, T., KAMIYA, N., and GOTO, M. (2005). Detection of single-base mutations by fluorogenic ribonuclease protection assay. Anal. Chem. 77, 7047-7053.
    • (2005) Anal. Chem , vol.77 , pp. 7047-7053
    • ICHINOSE, H.1    KITAOKA, M.2    OKAMURA, N.3    MARUYAMA, T.4    KAMIYA, N.5    GOTO, M.6
  • 12
    • 0029190888 scopus 로고
    • Functions and structures of ribonuclease H enzymes
    • KANAYA, S., and IKEHARA, M. (1995). Functions and structures of ribonuclease H enzymes. Subcell Biochem. 24, 377-422.
    • (1995) Subcell Biochem , vol.24 , pp. 377-422
    • KANAYA, S.1    IKEHARA, M.2
  • 13
    • 0033531235 scopus 로고    scopus 로고
    • Multiplex PCR/LDR for detection of K-ras mutations in primary colon tumors
    • KHANNA, M., PARK, P., ZIRVI, M., CAO, W., PICON, A., DAY, J., PATY, P., and BARANY, F. (1999). Multiplex PCR/LDR for detection of K-ras mutations in primary colon tumors. Oncogene 18, 27-38.
    • (1999) Oncogene , vol.18 , pp. 27-38
    • KHANNA, M.1    PARK, P.2    ZIRVI, M.3    CAO, W.4    PICON, A.5    DAY, J.6    PATY, P.7    BARANY, F.8
  • 14
    • 0037394519 scopus 로고    scopus 로고
    • RNaseCut: A MALDI mass spectrometry-based method for SNP discovery
    • KREBS, S., MEDUGORAC, I., SEICHTER, D., and FORSTER, M. (2003). RNaseCut: a MALDI mass spectrometry-based method for SNP discovery. Nucleic Acids Res. 31, e37.
    • (2003) Nucleic Acids Res , vol.31
    • KREBS, S.1    MEDUGORAC, I.2    SEICHTER, D.3    FORSTER, M.4
  • 15
    • 0022353404 scopus 로고
    • Detection of single base substitutions by ribonuclease cleavage at mismatches in RNA: DNA duplexes
    • MYERS, R.M., LARIN, Z., and MANIATIS, T. (1985). Detection of single base substitutions by ribonuclease cleavage at mismatches in RNA: DNA duplexes. Science 230, 1242-1246.
    • (1985) Science , vol.230 , pp. 1242-1246
    • MYERS, R.M.1    LARIN, Z.2    MANIATIS, T.3
  • 17
    • 0033547793 scopus 로고    scopus 로고
    • Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNse HIII from Bacillus subtilis: Classification of RNases H into three families
    • OHTANI, N., HARUKI, M., MORIKAWA, M., CROUCH, R.J., ITAYA, M. and KANAYA, S. (1999b). Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNse HIII from Bacillus subtilis: classification of RNases H into three families. Biochemistry 38, 605-618.
    • (1999) Biochemistry , vol.38 , pp. 605-618
    • OHTANI, N.1    HARUKI, M.2    MORIKAWA, M.3    CROUCH, R.J.4    ITAYA, M.5    KANAYA, S.6
  • 19
    • 13844281331 scopus 로고    scopus 로고
    • Expression of both Chlamydia pneumoniae RNase HIIs in Escherichia coli
    • PEI, D., LIU, J., LIU, X., and LI, S. (2005). Expression of both Chlamydia pneumoniae RNase HIIs in Escherichia coli. Protein Expr. Purif. 40, 101-106.
    • (2005) Protein Expr. Purif , vol.40 , pp. 101-106
    • PEI, D.1    LIU, J.2    LIU, X.3    LI, S.4
  • 20
    • 0033027742 scopus 로고    scopus 로고
    • Cleavage of double-stranded copy RNA by RNase 1 and RNase T1 provides a robust means to detect p53 gene mutations in clinical specimens
    • PRESCOTT, J., PATEL, H., TILLMAN, S., MCHUGH, T., and RALPH, D. (1999). Cleavage of double-stranded copy RNA by RNase 1 and RNase T1 provides a robust means to detect p53 gene mutations in clinical specimens. Electrophoresis 20, 1149-1161.
    • (1999) Electrophoresis , vol.20 , pp. 1149-1161
    • PRESCOTT, J.1    PATEL, H.2    TILLMAN, S.3    MCHUGH, T.4    RALPH, D.5
  • 21
    • 0035147075 scopus 로고    scopus 로고
    • Robust and accurate single nucleotide polymorphism genotyping by dynamic allele-specific hybridization (DASH): Design criteria and assay validation
    • PRINCE, J.A., FEUK, L., HOWELL, W.M., JOBS, M., EMAHAZION, T., BLENNOW, K., and BROOKES, A.J. (2001). Robust and accurate single nucleotide polymorphism genotyping by dynamic allele-specific hybridization (DASH): design criteria and assay validation. Genome Res. 11, 152-162.
    • (2001) Genome Res , vol.11 , pp. 152-162
    • PRINCE, J.A.1    FEUK, L.2    HOWELL, W.M.3    JOBS, M.4    EMAHAZION, T.5    BLENNOW, K.6    BROOKES, A.J.7
  • 22
    • 0041734767 scopus 로고    scopus 로고
    • Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus
    • SATO, A., KANAI, A., ITAYA, M., and TOMITA, M. (2003). Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus. Biochem. Biophys. Res. Commun. 309, 247-252.
    • (2003) Biochem. Biophys. Res. Commun , vol.309 , pp. 247-252
    • SATO, A.1    KANAI, A.2    ITAYA, M.3    TOMITA, M.4
  • 23
    • 0029913452 scopus 로고    scopus 로고
    • Mutation detection with MutH, MutL, and MutS mismatch repair proteins
    • SMITH. J., and MODRICH, P. (1996). Mutation detection with MutH, MutL, and MutS mismatch repair proteins. Proc. Natl. Acad. Sci. USA 93, 4374-4379.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 4374-4379
    • SMITH, J.1    MODRICH, P.2
  • 24
    • 0032981501 scopus 로고    scopus 로고
    • Enzymatic and chemical cleavage methods
    • TAYLOR, G.R. (1999). Enzymatic and chemical cleavage methods. Electrophoresis, 20, 1125-1130.
    • (1999) Electrophoresis , vol.20 , pp. 1125-1130
    • TAYLOR, G.R.1
  • 25
    • 3042525130 scopus 로고    scopus 로고
    • Mismatch cleavage by single-strand specific nucleases
    • TILL, B.J., BURTNER, C., COMAI, L., and HENIKOFF, S. (2004). Mismatch cleavage by single-strand specific nucleases. Nucleic Acids Res. 32, 2632-2641.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2632-2641
    • TILL, B.J.1    BURTNER, C.2    COMAI, L.3    HENIKOFF, S.4
  • 26
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • TYAGI, S., and KRAMER, F.R. (1996). Molecular beacons: probes that fluoresce upon hybridization. Nat. Biotechnol. 14, 303-308.
    • (1996) Nat. Biotechnol , vol.14 , pp. 303-308
    • TYAGI, S.1    KRAMER, F.R.2
  • 28
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • ZUKER, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • ZUKER, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.