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Volumn 80, Issue 2, 2008, Pages 306-315

Genetic analysis of the hypervariable region of the human astrovirus nsP1a coding region: Design of a new RFLP typing method

Author keywords

Astrovirus; Genotyping; Hypervariable region; RFLP

Indexed keywords

VIRUS PROTEIN; VIRUS RNA;

EID: 37549058043     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21058     Document Type: Article
Times cited : (15)

References (31)
  • 1
    • 0030741955 scopus 로고    scopus 로고
    • Detection and genetic differentiation of human astroviruses: Phylogenetic grouping varies by coding region
    • Belliot G, Laveran H, Monroe SS. 1997. Detection and genetic differentiation of human astroviruses: Phylogenetic grouping varies by coding region. Arch Virol 142:1323-1334.
    • (1997) Arch Virol , vol.142 , pp. 1323-1334
    • Belliot, G.1    Laveran, H.2    Monroe, S.S.3
  • 3
    • 0041854712 scopus 로고    scopus 로고
    • Persistent gastroenteritis in children infected with astrovirus: Association with serotype-3 strains
    • Caballero S, Guix S, El-Senousy WM, Calico I, Pintó RM, Bosch A. 2003. Persistent gastroenteritis in children infected with astrovirus: Association with serotype-3 strains. J Med Virol 71:245-250.
    • (2003) J Med Virol , vol.71 , pp. 245-250
    • Caballero, S.1    Guix, S.2    El-Senousy, W.M.3    Calico, I.4    Pintó, R.M.5    Bosch, A.6
  • 4
    • 0036146405 scopus 로고    scopus 로고
    • Processing of nonstructural protein 1a of human astrovirus
    • Geigenmüller U, Chew T, Ginzton N, Matsui SM. 2002. Processing of nonstructural protein 1a of human astrovirus. J Virol 76:2003-2008.
    • (2002) J Virol , vol.76 , pp. 2003-2008
    • Geigenmüller, U.1    Chew, T.2    Ginzton, N.3    Matsui, S.M.4
  • 5
    • 0031753102 scopus 로고    scopus 로고
    • Expression and processing of nonstructural proteins of the human astroviruses
    • Gibson CA, Chen J, Monroe SA, Denison MR. 1998. Expression and processing of nonstructural proteins of the human astroviruses. Adv Exp Med Biol 440:387-391.
    • (1998) Adv Exp Med Biol , vol.440 , pp. 387-391
    • Gibson, C.A.1    Chen, J.2    Monroe, S.A.3    Denison, M.R.4
  • 8
    • 10044283357 scopus 로고    scopus 로고
    • C-terminal nsP1a protein of human astrovirus colocalizes with the endoplasmic reticulum and viral RNA
    • Guix S, Caballero S, Bosch A, Pintó RM. 2004. C-terminal nsP1a protein of human astrovirus colocalizes with the endoplasmic reticulum and viral RNA. J Virol 78:13627-13636.
    • (2004) J Virol , vol.78 , pp. 13627-13636
    • Guix, S.1    Caballero, S.2    Bosch, A.3    Pintó, R.M.4
  • 9
    • 13544270913 scopus 로고    scopus 로고
    • Human astrovirus C-terminal nsP1a protein is involved in RNA replication
    • Guix S, Caballero S, Bosch A, Pintó RM. 2005. Human astrovirus C-terminal nsP1a protein is involved in RNA replication. Virology 333:124-131.
    • (2005) Virology , vol.333 , pp. 124-131
    • Guix, S.1    Caballero, S.2    Bosch, A.3    Pintó, R.M.4
  • 10
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, J.D.4    Higgins, D.G.5    Gibson, T.J.6
  • 11
    • 0036037438 scopus 로고    scopus 로고
    • Identification of human astrovirus infections from stool samples with diarrhea in Korea
    • Kang YH, Park YK, Ahn JB, Yeun JD, Jee YM. 2002. Identification of human astrovirus infections from stool samples with diarrhea in Korea. Arch Virol 147:1821-1827.
    • (2002) Arch Virol , vol.147 , pp. 1821-1827
    • Kang, Y.H.1    Park, Y.K.2    Ahn, J.B.3    Yeun, J.D.4    Jee, Y.M.5
  • 12
    • 0036135709 scopus 로고    scopus 로고
    • Proteolytic processing of a human astrovirus nonstructural protein
    • Kiang D, Matsui SM. 2002. Proteolytic processing of a human astrovirus nonstructural protein. J Gen Virol 83:25-34.
    • (2002) J Gen Virol , vol.83 , pp. 25-34
    • Kiang, D.1    Matsui, S.M.2
  • 13
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 15
    • 0036275252 scopus 로고    scopus 로고
    • Evolutionary relationships among Astroviridae
    • Lukashov VV, Goudsmit J. 2002. Evolutionary relationships among Astroviridae. J Gen Virol 83:1397-1405.
    • (2002) J Gen Virol , vol.83 , pp. 1397-1405
    • Lukashov, V.V.1    Goudsmit, J.2
  • 16
    • 0002649910 scopus 로고    scopus 로고
    • Astroviruses
    • Fields BN, Knipe DM, Howley PM, Griffin DE, Martin MA, Lamb RA, Roizman B, Straus SE, editors, Lippincott Williams & Wilkins. Philadelphia PA: pp
    • Matsui SM, Greenberg HB. 2001. Astroviruses. In: Fields BN, Knipe DM, Howley PM, Griffin DE, Martin MA, Lamb RA, Roizman B, Straus SE, editors. Fields virology. Lippincott Williams & Wilkins. Philadelphia PA: pp 875-893.
    • (2001) Fields virology , pp. 875-893
    • Matsui, S.M.1    Greenberg, H.B.2
  • 18
    • 10744225320 scopus 로고    scopus 로고
    • Protein products of the open reading frames encoding nonstructural proteins of human astrovirus serotype 8
    • Méndez E, Salas-Ocampo MP, Munguia ME, Arias CF. 2003. Protein products of the open reading frames encoding nonstructural proteins of human astrovirus serotype 8. J Virol 77:11378-11384.
    • (2003) J Virol , vol.77 , pp. 11378-11384
    • Méndez, E.1    Salas-Ocampo, M.P.2    Munguia, M.E.3    Arias, C.F.4
  • 20
    • 35448998551 scopus 로고    scopus 로고
    • Astrovirus increases epithelial barrier permeability independently of viral replication
    • Moser LA, Carter M, Schultz-Cherry S. 2007. Astrovirus increases epithelial barrier permeability independently of viral replication. J Virol 81:11937-11945.
    • (2007) J Virol , vol.81 , pp. 11937-11945
    • Moser, L.A.1    Carter, M.2    Schultz-Cherry, S.3
  • 21
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molec Biol Evol 3:418-426.
    • (1986) Molec Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 22
    • 0028922802 scopus 로고
    • Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing
    • Noel JS, Lee TW, Kurtz JB, Glass RI, Monroe SS. 1995. Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J Clin Microbiol 33:797-801.
    • (1995) J Clin Microbiol , vol.33 , pp. 797-801
    • Noel, J.S.1    Lee, T.W.2    Kurtz, J.B.3    Glass, R.I.4    Monroe, S.S.5
  • 23
    • 0035093927 scopus 로고    scopus 로고
    • Molecular characterization of human astroviruses in Germany
    • Oh D, Schreier E. 2001. Molecular characterization of human astroviruses in Germany. Arch Virol 146:443-455.
    • (2001) Arch Virol , vol.146 , pp. 443-455
    • Oh, D.1    Schreier, E.2
  • 24
    • 33745498883 scopus 로고    scopus 로고
    • Molecular characterization of human astroviruses isolated in Brazil, including the complete sequences of astrovirus genotypes 4 and 5
    • Silva PA, Cardoso DD, Schreier E. 2006. Molecular characterization of human astroviruses isolated in Brazil, including the complete sequences of astrovirus genotypes 4 and 5. Arch Virol 151:1405-1417.
    • (2006) Arch Virol , vol.151 , pp. 1405-1417
    • Silva, P.A.1    Cardoso, D.D.2    Schreier, E.3
  • 25
    • 0034984705 scopus 로고    scopus 로고
    • Characterisation of a South African human astrovirus as type 8 by antigenic and genetic analyses
    • Taylor MB, Walter J, Berke T, Cubitt WD, Mitchell DK, Matson DO. 2001. Characterisation of a South African human astrovirus as type 8 by antigenic and genetic analyses. J Med Virol 64:256-261.
    • (2001) J Med Virol , vol.64 , pp. 256-261
    • Taylor, M.B.1    Walter, J.2    Berke, T.3    Cubitt, W.D.4    Mitchell, D.K.5    Matson, D.O.6
  • 26
    • 33947201672 scopus 로고    scopus 로고
    • Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function
    • van Hemert FJ, Lukashov VV, Berkhout B. 2007. Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function. Virol J 4:25.
    • (2007) Virol , vol.J 4 , pp. 25
    • van Hemert, F.J.1    Lukashov, V.V.2    Berkhout, B.3
  • 30
    • 0032861031 scopus 로고    scopus 로고
    • Processing and intracellular location of human astrovirus non-structural proteins
    • Willcocks MM, Boxall AS, Carter MJ. 1999. Processing and intracellular location of human astrovirus non-structural proteins. J Gen Virol 80:2607-2611.
    • (1999) J Gen Virol , vol.80 , pp. 2607-2611
    • Willcocks, M.M.1    Boxall, A.S.2    Carter, M.J.3
  • 31
    • 33646133198 scopus 로고    scopus 로고
    • Quantitation of human astrovirus by real-time reverse-transcription-polymerase chain reaction to examine correlation with clinical illness
    • Zhang Z, Mitchell DK, Afflerbach C, Jakab F, Walter J, Zhang YJ, Staat MA, Azimi P, Matson DO. 2006. Quantitation of human astrovirus by real-time reverse-transcription-polymerase chain reaction to examine correlation with clinical illness. J Virol Methods 134:190-196.
    • (2006) J Virol Methods , vol.134 , pp. 190-196
    • Zhang, Z.1    Mitchell, D.K.2    Afflerbach, C.3    Jakab, F.4    Walter, J.5    Zhang, Y.J.6    Staat, M.A.7    Azimi, P.8    Matson, D.O.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.