Genetic diversity and population structure of an insular tree, Santalum austrocaledonicum in New Caledonian archipelago

Molecular Ecology

Volumn 14, Issue 7, 2005, Pages 1979-1989

  Bottin, L ^a   Verhaegen, D ^a   Tassin, J ^a,b   Olivieri, I ^c   Vaillant, A ^a   Bouvet, J M ^a  

^a CIRAD   (France)

^b IAC   (New Caledonia)

^c UNIV MONTPELLIER   (France)

Author keywords

Conservation; Gene flow; Insularity; Nudear microsatellites; Population genetic structure; Sandalwood

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; ENVIRONMENTAL PROTECTION; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HETEROZYGOTE; NEW CALEDONIA; POPULATION GENETICS; SANTALACEAE;

CLUSTER ANALYSIS; CONSERVATION OF NATURAL RESOURCES; GENE FREQUENCY; GENETICS, POPULATION; GEOGRAPHY; HETEROZYGOTE; MICROSATELLITE REPEATS; NEW CALEDONIA; SANTALUM; VARIATION (GENETICS);

SANTALACEAE; SANTALUM; SANTALUM AUSTROCALEDONICUM;

EID: 20144363056     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02576.x     Document Type: Article

References (71)

1. Aldrich PR, Preston R, Hamrick JL, Chavarriaga P, Kochert G (1998) Microsatellite analysis of demographic genetic structure in fragmented populations of the tropical tree Symphonia globulifera. Molecular Ecology, 7 (8), 933-944.
2. Barton NH (1989) Founder effect speciation. In: Speciation and Its Consequences (eds D Otte, JA Endler), pp. 229-256. Sinauer Associates, Sunderland, Massachusetts.
3. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2001) GENETIX 4.03, logiciel sous Windows™ pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier, France.
4. Bottin L, Vaillant A, Sire P, Cardi C, Bouvet JM (2004) Isolation and characterization of microsatellite loci in Santalum austrocaledonicum, Santalaceae. Molecular Ecology Notes (in press).
5. Bousquet J, Simon L, Lalonde M (1990) DNA amplification from vegetative and sexual tissue of trees using polymerase chain reaction. Canadian Journal of Forestry Research, 20, 254-257.
6. Brauner S, Crawford DJ, Stuessy TF (1992) Ribosomal DNA and RAPD variation in the rare plant family Lactoridaceae. American Journal of Botany, 79, 1436-1439.
7. Byrne M, MacDonald B, Broadhorst L, Brand J (2003) Regional genetic differentiation in Western Australian sandalwood (Santalum spicatum) as revealed by nuclear RFLP analysis. Theoretical and Applied Genetics, 107, 1208-1214.
8. 11 microsatellite markers. American Journal of Human Genetics, 7, 922-927.
9. Carlquist S (1980) Hawaii: A Natural History. Geology, Climate, Native Flora and Fauna Above the Shoreline, 2nd edn. Pacific Tropical Botanical Garden, Lawa'i Hawaii.
10. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution, 32, 550-570.
11. Cavers S, Navarro C, Lowe AJ (2003) A combination of molecular markers identifies evolutionarily significant units in Cedrela odorata L. (Meliaceae) in Costa Rica. Conservation Genetics, 4, 571-580.
12. Cockerham CC (1973) Analysis of gene frequencies. Genetics, 74, 679-700.
13. Collevatti RG, Grattapaglia D, Day JD (2001) Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci. Molecular Ecology, 10, 349-356.
14. Cox PA, Elmqvist T, Pierson ED, Rainey WE (1991) Flying foxes as strong interactors in South Pacific islands ecosystems: a conservation hypothesis. Conservation Biology, 5, 448-454.
15. Crandall KA, Bininda-Edmonds ORP, Mace GM, Wayne RK (2000) Considering evolutionary processes in conservation biology. Trends in Ecology & Evolution, 15, 290-295.
16. Crawford DJ, Stuessy TF, Lammers TG, Silva OM, Pacheco P (1990) Allozyme variation and evolutionary relationships among three species of Wahlenbergia (Campanulaceae) in the Juan Fernandez Islands. Botanical Gazette, 151, 119-124.
17. Crawford DJ, Stuessy TF, Silva OM (1987) Allozyme divergence and the evolution of Dendroseris (Compositae. Lactuceae) on the Juan Fernandez Islands. Systematic Botany, 12, 435-443.
18. Crawford DJ, Stuessy TF, Silva OM (1988) Allozyme variation in Chenopodium santae-clare, an endemic of the Juan Fernandez Islands, Chile. Biochemical and Systematic Ecology, 16, 279-284.
19. Darwin C (1859) On the Origin of Species by Means of Natural Selection (reprint of 1st edn 1950). Watts, London.
20. Dayanandan S, Dole J, Bawa K, Kesseli R (1999) Population structure delineated with microsatellite markers in fragmented populations of a tropical tree, Carapa guianensis (Meliaceae). Molecular Ecology, 8, 1585-1592.
21. Dutech C, Joly HI, Jarne P (2004) Gene flow, historical population dynamics and genetic diversity within French Guiana populations of a rainforest tree species, Vouacapoua americana. Heredity, 92, 69-77.
22. Ehrhart Y (1998) Descriptions of some sandal tree populations in the Southwest Pacific: consequences for the silviculture of these species and provenances. In: Proceeding for the International Seminar 'Sandal and its Products' Held on 18-19 December 1997. Australian Centre for International Agricultural Research, Canberra.
23. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco. Theoretical and Applied Genetics, 92, 832-839.
24. Elisens WJ (1992) Genetic divergence in Galvezia (Scrophulariaceae). evolutionary and biogeographic relationships among South American and Galapagos species. American Journal of Botany, 79, 198-206.
25. Ellstrand N, Elam D (1993) Population genetic consequences of small population size: implications for plant conservation. Annual Review of Ecology and Systematics, 24, 217-242.
26. Emerson BC (2002) Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and processes. Molecular Ecology, 11, 951-966.
27. England P, Phillip R, Usher, Annette V, Whelan, Robert J., Ayre, David J (2002) Microsatellite diversity and genetic structure of fragmented populations of the rare, fire-dependent shrub Grevillea macleayana. Molecular Ecology, 11 (6), 967-977.
28. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
29. Felsentstein J (1993) PHYLIP: Phylogenetic inference package, Version 3.573c. University of Washington, Seattle, WA.
30. Frankham R (1997) Do island populations have less genetic variation than mainland populations? Heredity, 78, 311-327.
31. Gibbs D, Barnes E, Cox J (2001) Pigeons and Doves: A Guide to the Pigeons and Doves of the World. Pica Press, Sussex.
32. Gibbs HL, Prior KA, Weatherhead PJ, Johnson G (1997) Genetic structure of populations of the threatened eastern massasauga rattlesnake, Sistrurus c. catenatus: evidence from microsatellite DNA markers. Molecular Ecology, 6, 1123-1132.
33. Goudet J (1995) FSTAT (vers. 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
34. Gustafsson S (2000) Patterns of genetic variation in Gymnadenia conopsea, the fragrant orchid. Molecular Ecology, 9, 1863-1872.
35. Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic diversity in plant species. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 351, 1291-1298.
36. Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. New Forests, 95, 124.
37. Huribert SH (1971) The non-concept of species diversity: a critique and alternative parameters. Ecology, 52, 577-586.
38. Kelly B, Hardy O, Bouvet JM (2004) Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali. Molecular Ecology, 13, 1231-1240.
39. Kimura M, Weiss GH (1964) The stepping-stone model of population structure and the decrease of genetic correlation with distance. Genetics, 49, 561-576.
40. Kwon JA, Morden CW (2002) Population genetic structure of two rare tree species (Colubrina oppositifolia and Alphitonia ponderosa, Rhamnaceae) from Hawaiian dry and mesic forests using random amplified polymorphic DNA markers. Molecular Ecology, 11, 991-1001.
41. Lemes MR, Gribel R, Proctor J, Grattapaglia D (2003) Population genetic structure of mahagany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implication for conservation. Molecular Ecology, 12, 2875-2883.
42. MacArthur RH, Wilson EO (1967) The Theory of Island Biogeography. Princeton University Press, Princeton, New Jersey.
43. Malécot V, Nickrent DL, Baas P, van den Oever L, Lobreau-Callen D (2004) A morphological cladistic analysis of Olacaceae. Systematic Botany, 29, 569-586.
44. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209-220.
45. Morand M-E, Brachet S, Rossignol P, Dufour J, Frascaria-Lacoste N (2002) A generalized heterozygote deficiency assessed with microsatellites in French common ash populations. Molecular Ecology, 11, 377-385.
46. Moritz C (1994) Defining 'evolutionary significant units' for conservation. Trends in Ecology & Evolution, 9, 373-375.
47. Moritz C (2002) Strategies to protect biological diversity and the evolutionary processes that sustain it. Systematic Biology, 51, 238-254.
48. Nasi R, Ehrhart Y (1996) Le santal un parfum de prospérité. 1ère partie - une longue histoire. Bois et Forêts Des Tropiques, 247, 5-19.
49. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
50. Newman D, Pilson D (1997) Increased probability of extinction due to decreased genetic effective population size: experimental populations of Clarkia pulchella. Evolution, 512, 354-362.
51. Novick RR, Dick CD, Lemes MR, Navarro C, Caccone A, Bermingham E (2003) Genetic structure of Mesoamerican population of big-leaf mahogany (Swietenia macrophylla) inferred from microsatellite analysis. Molecular Ecology, 12, 2885-2893.
52. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12, 357-358.
53. Perrier X, Flori A, Bonnot F (2003) Data analysis methods. In: Hamon P, Seguin M, Perrier X, Glaszmann JC Ed, Genetic diversity of cultivated tropical plants Enfield, Science Publishers Montpellier pp. 43-76.
54. Picard M (1999) L'archipel. Néo-Calédonien. Centre de Documentation Pédagogique Nouvelle-Calédonie, Nouméa.
55. ème année. Ecole Nationale des Ingénieurs de Travaux des Eaux et Forêts.
56. Radomiljac AM, McComb JA (1997) Nitogen-fixing and non-nitrogen-fixing woody host influences on the growth of the root hemi-parasite Santalum album L. Sandal and its products. International Seminar, Bangalore, India, 18-19 December 1997. ACIAR Proceedings, 84, 54-57.
57. Raymond M, Rousset F (1995) GENEPOP (version 3.2a): population genetics software for exact tests and ecumenism, Journal of Heredity, 86, 248-249.
58. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
59. Rivera-Ocasio E, Aide TM, McMillan MO (2002) Patterns of genetic diversity and biogeographical history of the tropical wetland tree, Pterocarpus officinalis (Jacq.), in the Caribbean basin. Molecular Ecology, 11, 675-683.
60. Rossetto M, Slade RW, Baverstock PR, Henry RJ, Lee LS (1999) Microsatellite variation and assessment of genetic structure in a tea tree (Melaleuca alternifolia - Myrtaceae). Molecular Ecology, 8, 633-643.
61. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
62. Ryder OA (1986) Species conservation and systematics: the dilemna of subspecies. Trends in Ecology & Evolution, 1, 9-10.
63. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
64. Savolainen O, Kuittinen H (2000) Small population processes. In: Forest Conservation Genetics: Principles and Practice (Young A, Boshier D, Boyle T), pp. 91-100, CABI Publishing, United Kingdom.
65. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN: a software for population genetics data analysis. User manual version 2.0. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland. Free program distributed by the authors over internet from lgb.unige.ch/arlequin/
66. Sheely DL, Meagher TR (1996) Genetic diversity in Micronesian island populations of the tropical tree Campnosperma brevipetiolata (Anacardiaceae). American Journal of Botany, 83, 1571-1579.
67. Stevenson J, Dobson JR, Prosser IP (2001) A late quaternary record of environmental change and human impact from New Caledonia. Palaeography, Palaeoclimatology, Palaeoecology, 168, 97-123.
68. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
69. Wright S (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.
70. Young AG, Boyle T, Brown AHD (1996) The population genetic consequences of habitat fragmentation for plants. Trends in Ecology & Evolution, 11, 413-418.
71. Young AG, Clarke GM (2000) Genetics, Demography and Viability of Fragmented Populations. Cambridge University Press, Cambridge, UK.