Expression of an intron-containing β-tubulin mRNA in catfish olfactory epithelium

Journal of Molecular Histology

Volumn 38, Issue 6, 2007, Pages 571-579

  Bettini, Ezio ^a,b   Margolis, Frank L ^a  

^a UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^b GSK   (Italy)

Author keywords

Tubulin; Ictalurus punctatus; In situ hybridization; Olfactory; PCR

Indexed keywords

BETA TUBULIN; COMPLEMENTARY DNA; DNA FRAGMENT; MESSENGER RNA; NUCLEOTIDE;

ARTICLE; CATFISH; DATA BASE; DNA HYBRIDIZATION; GENE CONTROL; GENE INSERTION; IN SITU HYBRIDIZATION; INTRON; MOLECULAR CLONING; NERVE CELL DIFFERENTIATION; NERVE FIBER; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OLFACTORY EPITHELIUM; OLFACTORY RECEPTOR; PRIORITY JOURNAL; PROTEIN EXPRESSION; RNA TRANSCRIPTION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; DNA, COMPLEMENTARY; GENE EXPRESSION; ICTALURIDAE; IN SITU HYBRIDIZATION; INTRONS; MOLECULAR SEQUENCE DATA; OLFACTORY MUCOSA; OLFACTORY RECEPTOR NEURONS; RNA, MESSENGER; SEQUENCE ALIGNMENT; TUBULIN;

DANIO RERIO; ICTALURUS PUNCTATUS;

EID: 37549017272     PISSN: 15672379     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10735-007-9139-9     Document Type: Article

References (46)

1. Bell LR, Maine EM, Schedl P, Cline TW (1988) Sex-lethal, a Drosophila sex determination switch gene, exhibits sex-specific RNA splicing and sequence similarity to RNA binding proteins. Cell 55:1037-1046
2. Bettini E, Porta A, Dahmen N, Wang H, Margolis FL (1994) Expressed sequence tags (est) identify genes preferentially expressed in catfish chemosensory tissues. Mol Brain Res 23:285-291
3. Bond RW, Wyborski RJ, Gottlieb DI (1990) Developmentally regulated expression of an exon containing a stop codon in the gene for glutamic acid decarboxylase. Proc Natl Acad Sci USA 87:8771-8775
4. Bor YC, Swartz J, Morrison A, Rekosh D, Ladomery M, Hammarskjold ML (2006) The Wilms' tumor 1 (WT1) gene (+KTS isoform) functions with a CTE to enhance translation from an unspliced RNA with a retained intron. Genes Dev 20:1597-1608
5. Brooks PJ, Funabashi T, Kleopoulos SP, Mobbs CV, Pfaff DW (1993) Cell-specific expression of preproenkephalin intronic heteronuclear RNA in the rat forebrain. Mol Brain Res 19:22-30
6. Buttgereit D, Renkawitz-Pohl R (1993) Expression of beta 1 tubulin (beta Tub56D) in Drosophila testis stem cells is regulated by a short upstream sequence while intron elements guide expression in somatic cells. Mol Gen Genet 241:263-270
7. Cai X, Lancto CA, Abrahamsen MS, Zhu G (2004) Intron-containing beta-tubulin transcripts in Cryptosporidium parvum cultured in vitro. Microbiology 150:1191-1195
8. Cohen JB, Broz SD, Levinson AD (1993) Expression of H-ras proto-oncogene is controlled by alternative splicing. Cell 58:461-472
9. Du T, Zamore PD (2005) MicroPrimer: the biogenesis and function of microRNA. Development 132:4645-4652
10. Dustin P (1984) Microtubules 2nd ed. Springer-Verlag, New York
11. Farbman AI, Margolis FL (1980) Olfactory marker protein during ontogeny: Immunohistochemical localization. Dev Biol 74:205-215
12. Fiume E, Christou P, Giani S, Breviario D (2004) Introns are key regulatory elements of rice tubulin expression. Planta 218:693-703
13. Gianl S, Morello L, Bardini M, Breviario D (2003) Tubulin intron sequences: multi-functional tools. Cell Biol Int 27:203-205
14. Gordon-Weeks PR (1993) Organization of microtubules in axonal growth cones: a role for microtubule-associated protein MAP 1B. J Neurocytol 22:717-725
15. Gower HJ, Barton CH, Elsom VL, Thompson J, Moore SE, Dickson G, Walsh FS (1988) Alternative splicing generates a secreted form of N-CAM in muscle and brain. Cell 55:955-964
16. Hansen A, Rolen SH, Anderson K, Morita Y, Caprio J, Finger TE (2003) Correlation between olfactory receptor cell type and function in the channel catfish. J Neurosci 23:9328-9339
17. Herve D, Rogard M, Levi-Strauss M (1995) Molecular analysis of the multiple Golf alpha subunit mRNAs in the rat brain. Brain Res Mol Brain Res 32:125-134
18. Keller A, Margolis FL (1975) Immunological studies of the rat olfactory marker protein. J Neurochem 24:1101-1106
19. Kohler J, Schafer-Preuss S, Buttgereit D (1996) Related enhancers in the intron of the beta1 tubulin gene of Drosophila melanogaster are essential for maternal and CNS-specific expression during embryogenesis. Nucleic Acids Res 24:2543-2550
20. Kozak M (1978) How do eucaryotic ribosomes select initiation regions in messenger RNA? Cell 15:1109-1123
21. Le Hir H, Nott A, Moore MJ (2003) How introns influence and enhance eukaryotic gene expression. Trends Biochem Sci 28:215-220
22. Li Y, Bor YC, Misawa Y, Xue Y, Rekosh D, Hammarskjold ML (2006) An intron with a constitutive transport element is retained in a Tap messenger RNA. Nature 443:234-237
23. Luduena RF (1993) Are tubulin isotypes functionally significant? Mol Biol Cell 4:445-457
24. Margolis JW, Munger SD, Zhao H, Margolis FL. OMP: A cautionary tale of a gene within a gene (2004) AChemS XXVI 2004, 151
25. McKean PG, Vaughan S, Gull K (2001) The extended tubulin superfamily. J Cell Sci 114:2723-2733
26. McKeown M (1992) Alternative mRNA splicing. Ann Rev Cell Biol 8:133-155
27. 35S for labeling probes used in in situ hybridization. Biotechniques 15:506-511
28. Mezquita J, Lopez-Ibor B, Pau M, Mezquita C (1993) Intron and intronless transcription of the chicken polyubiquitin gene UbII. FEBS Lett 319:244-248
29. Monti-Graziadei GA, Margolis FL, Harding JW Graziadei PPC (1977) Immunocytochemistry of the olfactory marker protein. J Histochem Cytochem 25:1311-1316
30. Muller JF, Marc RE (1984) Three distinct morphological classes of receptors in fish olfactory organs. J Comp Neurol 222:482-495
31. Nakaya HI, Amaral PP, Louro R, Lopes A, Fachel AA, Moreira YB, El-Jundi TA, da Silva AM, Reis EM, Verjovski-Almeida S (2007) Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biol 8:R43
32. Ngai J, Chess A, Dowling MM, Necles N, Macagno ER (1993) Coding of olfactory information: topography of odorant receptor expression in the catfish olfactory epithelium. Cell 72:667-680
33. Noe V, MacKenzie S, Ciudad CJ (2003) An intron is required for dihydrofolate reductase protein stability. J Biol Chem 278:38292-38300
34. Nott A, Meislin SH, Moore MJ (2003) A quantitative analysis of intron effects on mammalian gene expression. RNA 9:607-617
35. O'Connor V, Genin A, Davis S, Karishma KK, Doyere V, De Zeeuw CI, Sanger G, Hunt SP, Richter-Levin G, Mallet J, Laroche S, Bliss TV, French PJ (2004) Differential amplification of intron-containing transcripts reveals long term potentiation-associated up-regulation of specific Pde10A phosphodiesterase splice variants. J Biol Chem 279:15841-15849
36. Rama Krishna NS, Getchell M, Buiakova O, Margolis FL, Getchell T (1995) Human olfactory receptor neurons contain OMP mRNA in their dendritic and axonal processes. Neuroreport 6:817-821
37. Sabry JH, O'Connor TP, Evans L, Toroian-Raymond A, Kirschner M, Bentley D (1991) Microtubule behavior during guidance of pioneer neuron growth cones in situ. J Cell Biol 115:381-395
38. Schratt GM, Tuebing F, Nigh EA, Kane CG, Sabatini ME, Kiebler M, Greenberg ME (2006) A brain-specific microRNA regulates dendritic spine development. Nature 439:283-289
39. Shapiro MB, Senapathy P (1987) RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. Nucl Acids Res 15:7155-7174
40. Sullivan KF (1988) Structure and utilization of tubulin isotypes. Ann Rev Cell Biol 4:687-716
41. Sullivan KF, Machlin PS, Ratrie H III, Cleveland DW (1993) Sequence and expression of the chicken β3 tubulin gene. J Biol Chem 261:13317-13322
42. Vassar R, Chao SK, Sitcheran R, Nunez JM, Vosshall LB, Axel R (1994) Topographic organization of sensory projections to the olfactory bulb. Cell 79:981-991
43. Vo N, Klein ME, Varlamova O, Keller DM, Yamamoto T, Goodman RH, Impey S (2005) A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis. Proc Natl Acad Sci USA 102:16426-16431
44. Wang HF, Feng L, Niu DK (2007) Relationship between mRNA stability and intron presence. Biochem Biophys Res Commun 354:203-208
45. Wensley CH, Stone DM, Baker H, Kauer JS, Margolis FL, Chikaraishi DM (1995) Olfactory marker protein mRNA is found in axons of olfactory receptor neurons. J Neurosci 15:4827-4837
46. Zieske E, Theisen B, Bruecker H (1992) Structure, development and evolutionary aspects of the peripheral olfactory system. In: Hara TJ (ed) Fish chemoreception, Chapman and Hall, London, pp 13-39