The host species affects the microbial community in the goat rumen

Letters in Applied Microbiology

Volumn 46, Issue 1, 2008, Pages 132-135

  Shi, P J ^a   Meng, K ^a   Zhou, Z G ^a   Wang, Y R ^a   Diao, Q Y ^a   Yao, B ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Denaturing gradient gel electrophoresis; Goat rumen microbes; Host species; Microbial community structure

Indexed keywords

BACTERIA;

BACTERIAL POPULATION; DENATURING GRADIENT GEL ELECTROPHORESIS; ENVIRONMENTAL FACTORS; GOAT RUMEN MICROBE; HOST SPECIES; INTERSPECIES VARIATION; INTRASPECIES VARIATION; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY STRUCTURES; MOLECULAR LEVELS;

ELECTROPHORESIS;

BACTERIA; ELECTROPHORESIS; GELS; POPULATION STATISTICS;

BACTERIUM; CILIATE; COMMUNITY COMPOSITION; COMMUNITY STRUCTURE; DIET; DIGESTIVE SYSTEM; ENVIRONMENTAL FACTOR; GOAT; INTRASPECIFIC VARIATION; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS;

ARTICLE; CILIATE; DENATURING GRADIENT GEL ELECTROPHORESIS; DIET; ENVIRONMENTAL FACTOR; GOAT; HOST; MICROFLORA; NONHUMAN; RUMINANT STOMACH;

BACTERIA (MICROORGANISMS); CAPRA HIRCUS; CILIOPHORA;

EID: 37549014915     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2007.02274.x     Document Type: Article

References (13)

1. Dehority, B.A. (2003) Rumen Microbiology. Nottingham : Nottingham University Press.
2. Eschenlauer, S.C.P., McEwan, N.R., Calza, R.E., Wallace, R.J., Onodera, R. Newbold, C.J. (1998) Phylogenetic position and codon usage of two centrin genes from the rumen ciliate protozoan, Entodinium caudatum. FEMS Microbiol Lett 166, 147 154.
3. Hooper, L.V., Midtvedt, T. Gordon, J.I. (2002) How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu Rev Nutr 22, 283 307.
4. Kocherginskaya, S.A., Aminov, R.I. White, B.A. (2001) Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches. Anaerobe 7, 119 134.
5. McEwan, N.R., Abecia, L., Regensbogenova, M., Adam, C.L., Findlay, P.A. Newbold, C.J. (2005) Rumen microbial population dynamics in response to photoperiod. Lett Appl Microbiol 41, 97 101.
6. Muyzer, G. (1999) DGGE/TGGE a method for identifying genes from natural ecosystems. Curr Opin Microbiol 2, 317 322.
7. Muyzer, G., Brinkhoff, T., Nübel, U., Santegoeds, C., Schäfer, H. Wawer, C. (1998) Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. In Molecular Microbial Ecology Manual, Vol. 3.4.4 ed. Akkermans, A.D.L., van Elsas, J.D. de Bruijn, F.J. pp. 1 27. Dordrecht : Kluwer Academic Publishers.
8. Regensbogenova, M., Pristas, P., Javorsky, P., Moon-van der Staay, S.Y., van der Staay, G.W.M., Hackstein, J.H.P., Newbold, C.J. McEwan, N.R. (2004) Assessment of ciliates in the sheep rumen by DGGE. Lett Appl Microbiol 49, 144 147.
9. Rhind, S.M., Archer, Z.A. Adam, C.L. (2002) Seasonality of food intake in ruminants: recent developments in understanding. Nutr Res Rev 15, 43 65.
10. Seksik, P., Rigottier-Gois, L., Gramet, G., Sutren, M., Pochart, P., Marteau, P., Jian, R. Doré, J. (2003) Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut 52, 237 242.
11. Vanhoute, T., Huys, G., De Brandt, E. Swings, J. (2004) Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol Ecol 48, 437 446.
12. Yu, Z. Morrison, M. (2004) Improved extraction of PCR-quality community DNA from digesta and fecal samples. BioTechniques 36, 808 812.
13. Zoetendal, E.G., Collier, C.T., Koike, S., Mackie, R.I. Gaskins, H.R. (2004) Molecular ecological analysis of the gastrointestinal microbiota: a review. J Nutr 134, 465 472.