Phylogeography and domestication of Indian river buffalo

BMC Evolutionary Biology

Volumn 7, Issue , 2007, Pages

  Kumar, Satish ^a   Nagarajan, Muniyandi ^a   Sandhu, Jasmeet S ^a   Kumar, Niraj ^a   Behl, Vandana ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREED; BREED DIFFERENCE; BUBALUS BUBALIS; BUFFALO; DOMESTICATION; GENETIC VARIABILITY; HAPLOTYPE; INDIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGEOGRAPHY; RIVER; ANALYSIS OF VARIANCE; ANIMAL; DOMESTIC ANIMAL; FACTORIAL ANALYSIS; GENETICS; GEOGRAPHY; PHYLOGENY; SEQUENCE ALIGNMENT;

ANIMALIA; BUBALUS; BUBALUS BUBALIS;

MITOCHONDRIAL DNA;

ANALYSIS OF VARIANCE; ANIMALS; ANIMALS, DOMESTIC; BASE SEQUENCE; BUFFALOES; DNA, MITOCHONDRIAL; FACTOR ANALYSIS, STATISTICAL; GEOGRAPHY; HAPLOTYPES; INDIA; PHYLOGENY; SEQUENCE ALIGNMENT; VARIATION (GENETICS);

EID: 37249082078     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-186     Document Type: Article

References (26)

1. The water buffalo: a review. WR Cockrill, Brit Vet J 1981 137 8 16
2. Conservation and management of buffalo genetic resources of India. M George DS Balaine PK Vij S Kumar, Buffalo Production and Health ICAR, New Delhi, Nagarcenkar R, 1988 31 37
3. Evidence for two independent domestications of cattle. RT Loftus DE MacHugh DG Bradley PM Sharp P Cunningham, Proc Natl Acad Sci USA 1994 91 2757 2761 8146187 10.1073/pnas.91.7.2757
4. Mitochondrial diversity and the origin of the African and European cattle. DG Bradley DE MacHugh P Cunningham RT Loftus, Proc Natl Acad Sci USA 1996 93 5131 5135 8643540 10.1073/pnas.93.10.5131
5. The origin of European cattle: evidence from modern and ancient DNA. A Beja-Pereira D Caramelli C Lalueza-Fox C Vernesi N Ferrand A Casoli F Goyache LJ Royo S Conti M Lari A Martini L Ouragh A Magid A Atash A Zsolnai P Boscato C Triantaphylidis K Ploumi L Sineo F Mallegni P Taberlet G Erhardt L Sampietro J Bertranpetit G Barbujani G Luikart G Bertorelle, Proc Natl Acad Sci USA 2006 103 8113 8118 16690747 10.1073/pnas.0509210103
6. Evidence for cryptic glacial refugia from North American mountain sheep mitochondrial DNA. J Loehr K Worley A Grapputo J Carey A Veitch DW Coltman, J Evol Biol 2006 19 419 430 10.1111/j.1420-9101.2005.01027.x 16599918
7. Multiple maternal origins and weak phylogeographic structure in domestic goats. G Luikart L Giellly L Excoffier JD Vigne J Bouuvet P Taberlet, Proc Natl Acad Sci USA 2001 98 5927 5932 11344314 10.1073/pnas.091591198
8. Phylogeography and origin of Indian domestic goats. MB Joshi PK Rout AK Mandal CT Smith L Singh K Thangaraj, Mol Biol Evol 2004 21 454 462 10.1093/molbev/msh038 14660684
9. The Origin of the domestic pig: Independent domestication and subsequent introgression. E Giuffra JMH Kijas V Amarger O Carlborg JT Jeon L Andersson, Genetics 2000 154 1785 1791 10747069
10. Mitochondrial DNA and the origins of the domestic horse. T Jansen P Forster MA Levine H Oelke M Hurles C Renfrew J Weber K Olek, Proc Natl Acad Sci USA 2002 99 10905 10910 12130666 10.1073/pnas.152330099
11. DNA markers reveal the complexity of livestock domestication. MW Bruford DG Bradley G Luikart, Nat Rev Genet 2003 4 900 910 10.1038/nrg1203 14634637
12. Mitochondrial DNA analyses of Indian water buffalo support a distinct genetic origin of river and swamp buffalo. S Kumar M Nagarajan JS Sandhu N Kumar V Behl G Nishanth, Anim Genet 2007 38 227 232 10.1111/j.1365-2052.2007.01602.x 17459014
13. Independent maternal origin of Chinese swamp buffalo (Bubalus bubalis). CZ Lei W Zhang H Chen F Lu RY Liu XY Yang HC Zhang ZG Liu LB Yao ZF Lu ZL Zhao, Anim Genet 2007 38 97 102 10.1111/j.1365-2052.2007.01567.x 17313588
14. Genetic variation and relationships among eight Indian riverine buffalo breeds. S Kumar J Gupta N Kumar K Dikshit N Navani P Jain M Nagarajan, Mol Ecol 2006 15 593 600 10.1111/j.1365-294X.2006.02837.x 16499687
15. Origin and evolution of native American mtDNA variation: A reappraisal. P Forster R Harding A Torroni AJ Bandelt, Am J Hum Genet 1996 59 935 945 8808611
16. Rise and fall of the beringian steppe bison. B Shapiro AJ Drummond A Rambaut MC Wilson PE Matheus AV Sher OG Pybus MTP Gilbert I Barnes J Binladen E Willerslev AJ Hansen GF Baryshnikov JA Burns S Davydov JC Driver DG Froese CR Harington G Keddie P Kosintsev ML Kunz LD Martin RO Stephenson J Storer R Tedford S Zimov A Cooper, Science 2004 306 1561 1565 10.1126/science.1101074 15567864
17. The exploitation of wild and domestic water buffalo in prehistoric northwestern south Asia. AK Patel RH Meadow, Archaeology of the near east: Proceedings of the third international symposium on the archeozoology of the southwestern Asia and adjacent areas ARC- publications, Groningen, The Netherlands, Buitenhuis HL, Bartosiewicz L, Choyke AM, 1998 180 199
18. A history of domesticated animals. FE Zeuner, London, Hutchinson 1963
19. Rapes, Jarres et faisselles: la production et l'exploration des produits laitiers dans l'Indus du 3e millenaire. P Gouin, Paleorient 1990 16 37 54
20. Cuillers harappeennes: technologie et interpretation. P Gouin, Paleorient 1992 18 143 149
21. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins, Nucleic Acids Res 1997 24 4876 4882 10.1093/nar/25.24. 4876
22. ARLEQUIN 2.0: A software for population genetic data analysis. S Schneider D Roessli L Excoffier, Genetics and Biometry Laboratory, University of Geneva, Switzerland 2002
23. The detection of disease clustering and a generalized regression approach. NA Mantel, Cancer Res 1967 27 209 220 6018555
24. Isolation by distance, web service. JA Jensen J Bohonak SK Kelley, BMC Genet 2005 6 13 15760479 10.1186/1471-2156-6-13
25. MEGA 3.1: Integrated software for molecular evolutionary genetics analysis and sequence alignment. S Kumar K Tamura M Nei, Brief Bioinform 2004 5 150 163 10.1093/bib/5.2.150 15260895
26. Mitochondrial portraits of human populations. HJ Bandelt P Forster BC Sykes MB Richards, Genetics 1995 141 743 753 8647407