메뉴 건너뛰기




Volumn 4487 LNCS, Issue , 2007, Pages 78-85

Predicting binding sites of Hepatitis C virus complexes using residue binding propensity and sequence entropy

Author keywords

Binding propensity; Binding site prediction; Hepatitis C virus; Radial basis function neural networks; Sequence entropy

Indexed keywords

BINDING SITES; MEDICAL PROBLEMS; PROTEINS; RADIAL BASIS FUNCTION NETWORKS; SENSITIVITY ANALYSIS;

EID: 37249072532     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-72584-8_11     Document Type: Conference Paper
Times cited : (1)

References (17)
  • 1
    • 0036839176 scopus 로고    scopus 로고
    • Identification of the Hepatitis C Virus E2 Glycoprotein Binding Site on the Large Extracellular Loop of CD81
    • Drummer, H.E., Wilson, K.A. and Poumbourios, P.: Identification of the Hepatitis C Virus E2 Glycoprotein Binding Site on the Large Extracellular Loop of CD81. Journal of Virology, 76(21) (2002), 11143-11147
    • (2002) Journal of Virology , vol.76 , Issue.21 , pp. 11143-11147
    • Drummer, H.E.1    Wilson, K.A.2    Poumbourios, P.3
  • 2
    • 22144489879 scopus 로고    scopus 로고
    • Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme
    • Zhang, G.Z., Huang, D.S.: Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme. Journal of Computer Aided Molecular Design, 18 (2004), 797-810
    • (2004) Journal of Computer Aided Molecular Design , vol.18 , pp. 797-810
    • Zhang, G.Z.1    Huang, D.S.2
  • 4
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S.F., Madden, T.L., Schaffer, A.A. and et al.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25 (1997), 3389-3402
    • (1997) Nucleic Acids Research , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    and et, al.4
  • 5
    • 22244444205 scopus 로고    scopus 로고
    • Character and evolution of protein-protein interfaces
    • ReS, I. and Lichtarge, O.; Character and evolution of protein-protein interfaces. Physical Biology, 2 (2005), S36-S43
    • (2005) Physical Biology , vol.2
    • ReS, I.1    Lichtarge, O.2
  • 6
    • 0001528720 scopus 로고    scopus 로고
    • Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
    • Fraczkiewicz, R. and Braun, W.: Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. Journal of Computational Chemistry, 19 (1998), 319-333
    • (1998) Journal of Computational Chemistry , vol.19 , pp. 319-333
    • Fraczkiewicz, R.1    Braun, W.2
  • 7
    • 0035914476 scopus 로고    scopus 로고
    • Conservation Helps to Identify Biologically Relevant Crystal Contacts
    • Valdar, W.S.J. and Thornton, J.M.: Conservation Helps to Identify Biologically Relevant Crystal Contacts. J. Mol. Biol, 313 (2001), 399-416
    • (2001) J. Mol. Biol , vol.313 , pp. 399-416
    • Valdar, W.S.J.1    Thornton, J.M.2
  • 8
    • 0033047710 scopus 로고    scopus 로고
    • Neural network based prediction of residue contacts in protein
    • Fariselli, P., and Casadio, R.: Neural network based prediction of residue contacts in protein. Protein Engineering, 12 (1999), 15-21
    • (1999) Protein Engineering , vol.12 , pp. 15-21
    • Fariselli, P.1    Casadio, R.2
  • 9
    • 0025612174 scopus 로고
    • Resolution of hypervariable regions in T-cell receptor β chains by a modified Wu-Kabat index of amino acid diversity
    • Jores, R., Alzari, P.M, Meo, T.: Resolution of hypervariable regions in T-cell receptor β chains by a modified Wu-Kabat index of amino acid diversity. Proc. Natl. Acad. Sci. USA, 87 (1990), 9138-9142
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 9138-9142
    • Jores, R.1    Alzari, P.M.2    Meo, T.3
  • 10
    • 0031583033 scopus 로고    scopus 로고
    • Information content of individual genetic sequences
    • Schneider, T.D.: Information content of individual genetic sequences. Journal of Theoretical Biology, 189 (1997), 427-441
    • (1997) Journal of Theoretical Biology , vol.189 , pp. 427-441
    • Schneider, T.D.1
  • 11
    • 27344440132 scopus 로고    scopus 로고
    • Conservation and relative importance of residues across protein-protein interfaces
    • Guharoy, M. and Chakrabarti, P.: Conservation and relative importance of residues across protein-protein interfaces. Proc. Natl. Acad. Sci. USA, 102 (2005), 15447-15452
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15447-15452
    • Guharoy, M.1    Chakrabarti, P.2
  • 12
    • 0035878724 scopus 로고    scopus 로고
    • Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
    • Schärfer, A.A., Aravind, L., Madden, T.L., Shavirin, S. and et al.: Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Research, 29 (2001), 2994-3005.
    • (2001) Nucleic Acids Research , vol.29 , pp. 2994-3005
    • Schärfer, A.A.1    Aravind, L.2    Madden, T.L.3    Shavirin, S.4    and et, al.5
  • 14
    • 0037609791 scopus 로고    scopus 로고
    • Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces
    • Ma, B., Elkayam, T., Wolfson, H. and Nussinov, R.: Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces. Proc. Natl. Acad. Sci. USA, 100(10) (2003), 5772-5777
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.10 , pp. 5772-5777
    • Ma, B.1    Elkayam, T.2    Wolfson, H.3    Nussinov, R.4
  • 15
    • 33748660856 scopus 로고    scopus 로고
    • Intramolecular surface contacts contain information about protein-protein interface regions
    • De-Vries, S.J. and Bonvin, A.M.J.J.: Intramolecular surface contacts contain information about protein-protein interface regions. Bioinformatics, 22(17) (2006), 2094-2098
    • (2006) Bioinformatics , vol.22 , Issue.17 , pp. 2094-2098
    • De-Vries, S.J.1    Bonvin, A.M.J.J.2
  • 16
    • 0027291015 scopus 로고
    • Prediction of Protein Secondary Structure at Better than 70% Accuracy
    • Rost, B. and Sander, C.: Prediction of Protein Secondary Structure at Better than 70% Accuracy. J. Mol. Biol., 232(1) (1993), 584-599
    • (1993) J. Mol. Biol , vol.232 , Issue.1 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 17
    • 0141593924 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on an improved support vector machines approach
    • Kim, K. and Park, H.: Protein secondary structure prediction based on an improved support vector machines approach. Protein Engineering, 16(8) (2003), 553-560
    • (2003) Protein Engineering , vol.16 , Issue.8 , pp. 553-560
    • Kim, K.1    Park, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.