Holo- and apo-bound structures of bacterial periplasmic heme-binding proteins

Journal of Biological Chemistry

Volumn 282, Issue 49, 2007, Pages 35796-35802

  Ho, Winny W ^a   Li, Huiying ^a   Eakanunkul, Suntara ^b   Tong, Yong ^c   Wilks, Angela ^b   Guo, Maolin ^c   Poulos, Thomas L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

^c UNIVERSITY OF MASSACHUSETTS DARTMOUTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APO-BOUND STRUCTURES; HEME-BINDING PROTEINS; PSEUDOMONAS AERUGINOSA;

BINDING SITES; CELL MEMBRANES; MOLECULAR BIOLOGY; PATHOGENS; PROTEINS;

CRYSTAL STRUCTURE;

ARGININE; BACTERIAL PROTEIN; BINDING PROTEIN; CYANOCOBALAMIN BINDING PROTEIN; CYTOPLASM PROTEIN; HEME; HYDROGEN; HYDROXAMIC ACID; LIGAND; LYSINE; PROPIONIC ACID; PROTEIN BTUF; PROTEIN FHUD; PROTEIN PHUT; PROTEIN SHUT; SIDEROPHORE; TYROSINE; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; CYTOPLASM; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE; PSEUDOMONAS AERUGINOSA; SHIGELLA DYSENTERIAE; STRUCTURE ANALYSIS;

BINDING SITES; CARRIER PROTEINS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI PROTEINS; HEMEPROTEINS; LIGANDS; MEMBRANE TRANSPORT PROTEINS; PERIPLASMIC BINDING PROTEINS; PERIPLASMIC PROTEINS; PROTEIN STRUCTURE, TERTIARY; PSEUDOMONAS AERUGINOSA; SHIGELLA DYSENTERIAE; STRUCTURAL HOMOLOGY, PROTEIN; VITAMIN B 12;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS AERUGINOSA; SHIGELLA DYSENTERIAE;

EID: 37249063033     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M706761200     Document Type: Article

References (24)

1. Eakanunkul, S., Lukat-Rodgers, G. S., Sumithran, S., Ghosh, A., Rodgers, K. R., Dawson, J. H., and Wilks, A. (2005) Biochemistry 44, 13179-13191
2. Tong, Y., and Guo, M. (2007) J. Biol. Inorg. Chem. 12, 735-750
3. Niyogi, S. K. (2005) J. Microbiol. 43, 133-143
4. Ochsner, U. A., Johnson, Z., and Vasil, M. L. (2000) Microbiology 146, 185-198
5. Karpowich, N. K., Huang, H. H., Smith, P. C., and Hunt, J. F. (2003) J. Biol. Chem. 278, 8429-8434
6. Quiocho, F. A., and Ledvina, P. S. (1996) Mol. Microbiol. 20, 17-25
7. Borths, E. L., Locher, K. P., Lee, A. T., and Rees, D. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16642-16647
8. Clarke, T. E., Braun, V., Winkelmann, G., Tari, L. W., and Vogel, H. J. (2002) J. Biol. Chem. 277, 13966-13972
9. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497
10. Leslie, A. G. W. (1992) Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography, Vol. 26
11. Pape, T., and Schneider, T. (2004) J. Appl. Crystallogr. 37, 843-844
12. Terwiliger, T. G., and Breendenzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
13. Potterton, E., Briggs, P., Turkenburg, M., and Dodson, E. (2003) Acta Crystallogr. Sect. D Biol. Crystallogr. 59, 1131-1137
14. Read, R. J. (1986) Acta Crystallogr. Sect. A 42, 140-149
15. Cowtan, K. D., and Zhang, K. Y. (1999) Prog. Biophys. Mol. Biol. 72, 245-270
16. Abrahams, J. P., and Leslie, A. G. (1996) Acta Crystallogr. Sect. D Biol. Crystallogr. 52, 30-42
17. Perrakis, A., Harkiolaki, M., Wilson, K. S., and Lamzin, V. S. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1445-1450
18. Jones, T., and Kjeldgaard, M. (1997) Methods Enzymol. 277, 173-208
19. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
20. McCoy, A. J. (2007) Acta Crystallogr. Sect. D Biol. Crystallogr. 63, 32-41
21. Kandt, C., Xu, Z., and Tieleman, D. P. (2006) Biochemistry 45, 13284-13292
22. Murthy, M. R., Reid, T. J. d., Sicignano, A., Tanaka, N., and Rossmann, M. G. (1981) J. Mol. Biol. 152, 465-499
23. Loewen, P. C., Carpena, X., Rovira, C., Ivancich, A., Perez-Luque, R., Haa, R., Odenbreit, S., Nicholls, P., and Fita, I. (2004) Biochemistry 43, 3089-3103
24. Zhu, H., Alexeev, D., Hunter, D. J. B., Campopiano, D. J., and Sadler, P. J. (2003) Biochem. J. 376, 35-41