-
1
-
-
0037107887
-
Structure-Based Virtual Screening: An Overview
-
Lyne, P. D. Structure-Based Virtual Screening: an Overview. Drug Discovery Today 2002, 7, 1047-1055.
-
(2002)
Drug Discovery Today
, vol.7
, pp. 1047-1055
-
-
Lyne, P.D.1
-
2
-
-
0036520840
-
A Review of Protein-Small Molecule Docking Methods
-
Taylor, R. D.; Jewsbury, P. J.; Essex, J. W. A Review of Protein-Small Molecule Docking Methods. J. Comput.-Aided Mol. Des. 2002, 16, 151-166.
-
(2002)
J. Comput.-Aided Mol. Des
, vol.16
, pp. 151-166
-
-
Taylor, R.D.1
Jewsbury, P.J.2
Essex, J.W.3
-
3
-
-
5344244908
-
Chemical Similarity Searching
-
Willett, P.; Barnard, J. M.; Downs, G. M. Chemical Similarity Searching. J. Chem. Inf. Model. 1998, 38, 983-996.
-
(1998)
J. Chem. Inf. Model
, vol.38
, pp. 983-996
-
-
Willett, P.1
Barnard, J.M.2
Downs, G.M.3
-
4
-
-
0001577643
-
Chemical Similarity Using Physiochemical Property Descriptors
-
Kearsley, S. K.; Sallamack, S.; Fluder, E. M.; Andose, J. D.; Mosley, R. T.; Sheridan, R. P. Chemical Similarity Using Physiochemical Property Descriptors. J. Chem. Inf. Model. 1996, 36, 118-127.
-
(1996)
J. Chem. Inf. Model
, vol.36
, pp. 118-127
-
-
Kearsley, S.K.1
Sallamack, S.2
Fluder, E.M.3
Andose, J.D.4
Mosley, R.T.5
Sheridan, R.P.6
-
5
-
-
1542712834
-
Comparison of Correlation Vector Methods for Ligand-Based Similarity Searching
-
Fechner, U.; Franke, L.; Renner, S.; Schneider, P.; Schneider, G. Comparison of Correlation Vector Methods for Ligand-Based Similarity Searching. J. Comput.-Aided Mol. Des. 2003, 17, 687-698.
-
(2003)
J. Comput.-Aided Mol. Des
, vol.17
, pp. 687-698
-
-
Fechner, U.1
Franke, L.2
Renner, S.3
Schneider, P.4
Schneider, G.5
-
6
-
-
23944454816
-
Virtual Screening of Biogenic Amine-Binding G-Protein Coupled Receptors: Comparative Evaluation of Protein- and Ligand-Based Virtual Screening Protocols
-
Evers, A.; Hessler, G.; Matter, H.; Klabunde, T. Virtual Screening of Biogenic Amine-Binding G-Protein Coupled Receptors: Comparative Evaluation of Protein- and Ligand-Based Virtual Screening Protocols. J. Med. Chem. 2005, 48, 5448-5465.
-
(2005)
J. Med. Chem
, vol.48
, pp. 5448-5465
-
-
Evers, A.1
Hessler, G.2
Matter, H.3
Klabunde, T.4
-
7
-
-
1042265247
-
Approaches to Measure Chemical Similarity - a Review
-
Nikolova, N.; Jaworska, J. Approaches to Measure Chemical Similarity - a Review. QSAR Comb. Sci. 2003, 22, 1006-1026.
-
(2003)
QSAR Comb. Sci
, vol.22
, pp. 1006-1026
-
-
Nikolova, N.1
Jaworska, J.2
-
8
-
-
0037362042
-
Evaluation of Similarity Measures for Searching the Dictionary of Natural Products Database
-
Whittle, M.; Willett, P.; Klaffke, W.; van Noort, P. Evaluation of Similarity Measures for Searching the Dictionary of Natural Products Database. J. Chem. Inf. Model. 2003, 43, 449-457.
-
(2003)
J. Chem. Inf. Model
, vol.43
, pp. 449-457
-
-
Whittle, M.1
Willett, P.2
Klaffke, W.3
van Noort, P.4
-
9
-
-
0037361940
-
Similarity Searching Using Reduced Graphs
-
Gillet, V. J.; Willett, P.; Bradshaw, J. Similarity Searching Using Reduced Graphs. J. Chem. Inf. Model. 2003, 43, 338-345.
-
(2003)
J. Chem. Inf. Model
, vol.43
, pp. 338-345
-
-
Gillet, V.J.1
Willett, P.2
Bradshaw, J.3
-
10
-
-
0001639610
-
Chemical Similarity Using Geometric Atom Pair Descriptors
-
Sheridan, R. P.; Miller, M. D.; Underwood, D. J.; Kearsley, S. K. Chemical Similarity Using Geometric Atom Pair Descriptors. J. Chem. Inf. Model. 1996, 36, 128-136.
-
(1996)
J. Chem. Inf. Model
, vol.36
, pp. 128-136
-
-
Sheridan, R.P.1
Miller, M.D.2
Underwood, D.J.3
Kearsley, S.K.4
-
11
-
-
5444268169
-
Enhancing the Effectiveness of Virtual Screening by Fusing Nearest Neighbor Lists: A Comparison of Similarity Coefficients
-
Whittle, M.; Gillet, V. J.; Willett, P.; Alex, A.; Loesel, J. Enhancing the Effectiveness of Virtual Screening by Fusing Nearest Neighbor Lists: A Comparison of Similarity Coefficients. J. Chem. Inf. Model. 2004, 44, 1840-1848.
-
(2004)
J. Chem. Inf. Model
, vol.44
, pp. 1840-1848
-
-
Whittle, M.1
Gillet, V.J.2
Willett, P.3
Alex, A.4
Loesel, J.5
-
12
-
-
2942700377
-
Comparison of Fingerprint-Based Methods for Virtual Screening Using Multiple Bioactive Reference Structures
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of Fingerprint-Based Methods for Virtual Screening Using Multiple Bioactive Reference Structures. J. Chem. Inf. Model. 2004, 44, 1177-1185.
-
(2004)
J. Chem. Inf. Model
, vol.44
, pp. 1177-1185
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
13
-
-
33750986884
-
Bayes Affinity Fingerprints Improve Retrieval Rates in Virtual Screening and Define Orthogonal Bioactivity Space: When Are Multitarget Drugs a Feasible Concept?
-
Bender, A.; Jenkins, J. L.; Glick, M.; Deng, Z.; Nettles, J. H.; Davies, J. W. "Bayes Affinity Fingerprints" Improve Retrieval Rates in Virtual Screening and Define Orthogonal Bioactivity Space: When Are Multitarget Drugs a Feasible Concept? J. Chem. Inf. Model. 2006, 46, 2445-2456.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 2445-2456
-
-
Bender, A.1
Jenkins, J.L.2
Glick, M.3
Deng, Z.4
Nettles, J.H.5
Davies, J.W.6
-
14
-
-
27544441634
-
Enhancing the Effectiveness of Similarity-Based Virtual Screening Using Nearest-Neighbor Information
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Enhancing the Effectiveness of Similarity-Based Virtual Screening Using Nearest-Neighbor Information. J. Med. Chem. 2005, 48, 7049-7054.
-
(2005)
J. Med. Chem
, vol.48
, pp. 7049-7054
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
15
-
-
8844281752
-
Novelty Detection in Learning Systems
-
Marsland, S. Novelty Detection in Learning Systems. Neural Comput. Surv. 2003, 3, 157-195.
-
(2003)
Neural Comput. Surv
, vol.3
, pp. 157-195
-
-
Marsland, S.1
-
16
-
-
0142063407
-
Novelty Detection: A Review - Part 1: Statistical Approaches
-
Markou, M.; Singh, S. Novelty Detection: a Review - Part 1: Statistical Approaches. Signal Process. 2003, 83, 2481-2497.
-
(2003)
Signal Process
, vol.83
, pp. 2481-2497
-
-
Markou, M.1
Singh, S.2
-
17
-
-
0142126712
-
Novelty Detection: A Review - Part 2: Neural Network Based Approaches
-
Markou, M.; Singh, S. Novelty Detection: a Review - Part 2: Neural Network Based Approaches. Signal Process. 2003, 83, 2499-2521.
-
(2003)
Signal Process
, vol.83
, pp. 2499-2521
-
-
Markou, M.1
Singh, S.2
-
18
-
-
0030278229
-
Locating Biologically Active Compounds in Medium-Sized Heterogeneous Data Sets by Topological Autocorrelation Vectors: Dopamine and Benzodiazepine Agonists
-
Bauknecht, H.; Zell, A.; Bayer, H.; Levi, P.; Wagener, M.; Sadowski, J.; Gasteiger, J. Locating Biologically Active Compounds in Medium-Sized Heterogeneous Data Sets by Topological Autocorrelation Vectors: Dopamine and Benzodiazepine Agonists. J. Chem. Inf. Model. 1996, 36, 1205-1213.
-
(1996)
J. Chem. Inf. Model
, vol.36
, pp. 1205-1213
-
-
Bauknecht, H.1
Zell, A.2
Bayer, H.3
Levi, P.4
Wagener, M.5
Sadowski, J.6
Gasteiger, J.7
-
20
-
-
38049168357
-
SOM-Based Data Visualization Methods
-
Vesanto, J. SOM-Based Data Visualization Methods. Intell. Data Anal. 1996,3, 111-126.
-
(1996)
Intell. Data Anal
, vol.3
, pp. 111-126
-
-
Vesanto, J.1
-
21
-
-
0030232917
-
Self-Organising Neural Networks for Automated Machinery Monitoring Systems
-
Zhang, S.; Ganesan, R.; Xistris, G. D. Self-Organising Neural Networks for Automated Machinery Monitoring Systems. Mech. Syst. Signal. Pr. 1996, 10, 517-532.
-
(1996)
Mech. Syst. Signal. Pr
, vol.10
, pp. 517-532
-
-
Zhang, S.1
Ganesan, R.2
Xistris, G.D.3
-
22
-
-
28844433590
-
Modified Self-Organising Map for Automated Novelty Detection Applied to Vibration Signal Monitoring
-
Wong, M. L. D.; Jack, L. B.; Nandi, A. K. Modified Self-Organising Map for Automated Novelty Detection Applied to Vibration Signal Monitoring. Mech. Syst. Signal. Pr. 2006, 20, 593-610.
-
(2006)
Mech. Syst. Signal. Pr
, vol.20
, pp. 593-610
-
-
Wong, M.L.D.1
Jack, L.B.2
Nandi, A.K.3
-
23
-
-
33750357203
-
Predicting Compound Selectivity by Self-Organizing Maps: Cross-Activities of Metabotropic Glutamate Receptor Antagonists
-
Noeske, T.; Sasse, B. C.; Stark, H.; Parsons, C. G.; Weil, T.; Schneider, G. Predicting Compound Selectivity by Self-Organizing Maps: Cross-Activities of Metabotropic Glutamate Receptor Antagonists. ChemMedChem 2006, 1, 1066-1068.
-
(2006)
ChemMedChem
, vol.1
, pp. 1066-1068
-
-
Noeske, T.1
Sasse, B.C.2
Stark, H.3
Parsons, C.G.4
Weil, T.5
Schneider, G.6
-
24
-
-
1842639233
-
Mining High-Throughput Screening Data of Combinatorial Libraries: Development of a Filter to Distinguish Hits From Nonhits
-
Teckentrup, A.; Briem, H.; Gasteiger, J. Mining High-Throughput Screening Data of Combinatorial Libraries: Development of a Filter to Distinguish Hits From Nonhits. J. Chem. Inf. Model. 2004, 44, 626-634.
-
(2004)
J. Chem. Inf. Model
, vol.44
, pp. 626-634
-
-
Teckentrup, A.1
Briem, H.2
Gasteiger, J.3
-
25
-
-
33845760580
-
Applications of Self-Organizing Neural Networks in Virtual Screening and Diversity Selection
-
Selzer, P.; Ertl, P. Applications of Self-Organizing Neural Networks in Virtual Screening and Diversity Selection. J. Chem. Inf. Model. 2006, 46, 2319-2323.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 2319-2323
-
-
Selzer, P.1
Ertl, P.2
-
26
-
-
23844435134
-
World of Molecular Bioactivity
-
Oprea, T. I, Ed, Wiley-VCH: New York
-
Olah, M.; Mracec, M.; Ostopovici, L.; Rad, R.; Bora, A.; Hadaruga, N.; Olah, I.; Banda, M.; Simon, Z.; Mracec, M.; Oprea, T. I. WOMBAT: World of Molecular Bioactivity. In Cheminformatics in Drug Discovery; Oprea, T. I., Ed.; Wiley-VCH: New York, 2003; pp 223-241
-
(2003)
Cheminformatics in Drug Discovery
, pp. 223-241
-
-
Olah, M.1
Mracec, M.2
Ostopovici, L.3
Rad, R.4
Bora, A.5
Hadaruga, N.6
Olah, I.7
Banda, M.8
Simon, Z.9
Mracec, M.10
Oprea, T.11
WOMBAT, I.12
-
27
-
-
0029233859
-
Simulation Analysis of Experimental Design Strategies for Screening Random Compounds As Potential New Drugs and Agrochemicals
-
Taylor, R. Simulation Analysis of Experimental Design Strategies for Screening Random Compounds As Potential New Drugs and Agrochemicals. J. Chem. Inf. Model. 1995, 35, 59-67.
-
(1995)
J. Chem. Inf. Model
, vol.35
, pp. 59-67
-
-
Taylor, R.1
-
28
-
-
0032671931
-
Unsupervised Data Base Clustering Based on Daylight's Fingerprint and Tanimoto Similarity: A Fast and Automated Way To Cluster Small and Large Data Sets
-
Butina, D. Unsupervised Data Base Clustering Based on Daylight's Fingerprint and Tanimoto Similarity: A Fast and Automated Way To Cluster Small and Large Data Sets. J. Chem. Inf. Model. 1999, 39, 747-750.
-
(1999)
J. Chem. Inf. Model
, vol.39
, pp. 747-750
-
-
Butina, D.1
-
29
-
-
84858503877
-
-
R Development Core Team. R: A language and environment for statistical computing, version 2.2.1; 2005, accessed Jan 1, 2006
-
R Development Core Team. R: A language and environment for statistical computing, version 2.2.1; 2005. http://www.r-project.org (accessed Jan 1, 2006).
-
-
-
-
30
-
-
84858485377
-
-
Daylight Chemical Information Systems Inc, accessed June 2006
-
Daylight Chemical Information Systems Inc. http://www.daylight.com/ dayhtml/doc/theory/theory.finger.html (accessed June 2006).
-
-
-
-
32
-
-
0001057103
-
Autocorrelation of a Topological Structure: A New Molecular Descriptor
-
Moreau, G.; Broto, P. Autocorrelation of a Topological Structure: A New Molecular Descriptor. New J. Chem. 1980, 4, 359-360.
-
(1980)
New J. Chem
, vol.4
, pp. 359-360
-
-
Moreau, G.1
Broto, P.2
-
33
-
-
9644274036
-
Comparison of Different Classification Methods Applied to a Mode of Toxic Action Data Set
-
Spycher, S.; Nendza, M.; Gasteiger, J. Comparison of Different Classification Methods Applied to a Mode of Toxic Action Data Set. QSAR Comb. Sci. 2004, 23, 779-791.
-
(2004)
QSAR Comb. Sci
, vol.23
, pp. 779-791
-
-
Spycher, S.1
Nendza, M.2
Gasteiger, J.3
-
34
-
-
84858507086
-
-
PETRA, Parameter Estimation for the Treatment of Reactivity Applications, version 4.0; Molecular Networks GmbH: Erlangen, Germany, 2006, accessed June 2006
-
PETRA - Parameter Estimation for the Treatment of Reactivity Applications, version 4.0; Molecular Networks GmbH: Erlangen, Germany, 2006. http://www.molecular-networks.com (accessed June 2006).
-
-
-
-
35
-
-
0000815422
-
Residual Electronegativity - an Empirical Quantification of Polar Influences and Its Application to the Proton Affinity of Amines
-
Hutchings, M. G.; Gasteiger, J. Residual Electronegativity - an Empirical Quantification of Polar Influences and Its Application to the Proton Affinity of Amines. Tetrahedron Lett. 1983, 24, 2541-2544.
-
(1983)
Tetrahedron Lett
, vol.24
, pp. 2541-2544
-
-
Hutchings, M.G.1
Gasteiger, J.2
-
36
-
-
0000515847
-
New Empirical Models of Substituent Polarisability and Their Application to Stabilisation Effects in Positively Charged Species
-
Gasteiger, J.; Hutchings, M. G. New Empirical Models of Substituent Polarisability and Their Application to Stabilisation Effects in Positively Charged Species. Tetrahedron Lett. 1983, 24, 2537-2540.
-
(1983)
Tetrahedron Lett
, vol.24
, pp. 2537-2540
-
-
Gasteiger, J.1
Hutchings, M.G.2
-
37
-
-
49149147973
-
Iterative Partial Equalization of Orbital Electronegativity - a Rapid Access to Atomic Charges
-
Gasteiger, J.; Marsili, M. Iterative Partial Equalization of Orbital Electronegativity - a Rapid Access to Atomic Charges. Tetrahedron 1980, 36, 3219-3228.
-
(1980)
Tetrahedron
, vol.36
, pp. 3219-3228
-
-
Gasteiger, J.1
Marsili, M.2
-
38
-
-
0345871263
-
An Analysis of the Autocorrelation Descriptor for Molecules
-
Hollas, B. An Analysis of the Autocorrelation Descriptor for Molecules. J. Math. Chem. 2003, 33, 91-101.
-
(2003)
J. Math. Chem
, vol.33
, pp. 91-101
-
-
Hollas, B.1
-
39
-
-
84858507085
-
-
ADRIANA.Code, version 1.0; Molecular Networks GmbH: Erlangen, Germany, 2006, accessed June 2006
-
ADRIANA.Code, version 1.0; Molecular Networks GmbH: Erlangen, Germany, 2006. http://www.molecular-networks.com (accessed June 2006).
-
-
-
-
40
-
-
0033971270
-
The Mahalanobis Distance
-
De Maesschalck, R.; Jouan-Rimbaud, D.; Massart, D. L. The Mahalanobis Distance. Chemom. Intell. Lab. 2000, 50, 1-18.
-
(2000)
Chemom. Intell. Lab
, vol.50
, pp. 1-18
-
-
De Maesschalck, R.1
Jouan-Rimbaud, D.2
Massart, D.L.3
-
41
-
-
37249010383
-
On the Decomposition of the Self-Organizing Map Distortion Measure
-
Kitakyushu, Japan
-
Vesanto, J.; Sulkava, M.; Hollmén, J. On the Decomposition of the Self-Organizing Map Distortion Measure. In Proceedings of the Workshop on Self-Organizing Maps (WSOM'03); Kitakyushu, Japan, 2003; pp 11-16.
-
(2003)
Proceedings of the Workshop on Self-Organizing Maps (WSOM'03)
, pp. 11-16
-
-
Vesanto, J.1
Sulkava, M.2
Hollmén, J.3
-
42
-
-
84858505120
-
-
Pölzlbauer, G. Survey and Comparison of Quality Measures for SelfOrganizing Maps. In Proceedings of the Fifth Workshop on Data Analysis (WDA'04); Sliezsky dom, Vysoké Tatry, Slovakia, 2004, Paralic, J., Pölzlbauer, G., Rauber, A., Eds.; Elfa Academic Press: Košice, 2004.
-
Pölzlbauer, G. Survey and Comparison of Quality Measures for SelfOrganizing Maps. In Proceedings of the Fifth Workshop on Data Analysis (WDA'04); Sliezsky dom, Vysoké Tatry, Slovakia, 2004, Paralic, J., Pölzlbauer, G., Rauber, A., Eds.; Elfa Academic Press: Košice, 2004.
-
-
-
-
43
-
-
0034351495
-
Effectiveness of Retrieval in Similarity Searches of Chemical Databases: A Review of Performance Measures
-
Edgar, S. J.; Holliday, J. D.; Willett, P. Effectiveness of Retrieval in Similarity Searches of Chemical Databases: A Review of Performance Measures. J. Mol. Graphics Modell. 2000, 18, 343-357.
-
(2000)
J. Mol. Graphics Modell
, vol.18
, pp. 343-357
-
-
Edgar, S.J.1
Holliday, J.D.2
Willett, P.3
-
44
-
-
21444448621
-
Strategies for Compound Selection
-
Olah, M.; Bologa, C.; Oprea, T. I. Strategies for Compound Selection. Curr. Drug Discovery Technol. 2004, 1, 211-220.
-
(2004)
Curr. Drug Discovery Technol
, vol.1
, pp. 211-220
-
-
Olah, M.1
Bologa, C.2
Oprea, T.I.3
-
45
-
-
37249037784
-
-
Murdoch, D. Venn Diagrams in R. J. Statist. Soft. 2004, 11, Code Snippet 1.
-
Murdoch, D. Venn Diagrams in R. J. Statist. Soft. 2004, 11, Code Snippet 1.
-
-
-
-
46
-
-
84858505117
-
-
MeqiSuite, version 2.30; Pannanugget Consulting L.L.C, Kalamazoo, MI, U.S.A, accessed Jan 20, 2007
-
MeqiSuite, version 2.30; Pannanugget Consulting L.L.C.: Kalamazoo, MI, U.S.A. http://www.pannanugget.com (accessed Jan 20, 2007).
-
-
-
-
47
-
-
37249025432
-
-
Johnson, M. An Introduction to the MeqiSuite Indices; Technical Report 2006/001; Pannanugget Consulting, Inc.: Kalamazoo, MI, U.S.A., 2006.
-
Johnson, M. An Introduction to the MeqiSuite Indices; Technical Report 2006/001; Pannanugget Consulting, Inc.: Kalamazoo, MI, U.S.A., 2006.
-
-
-
-
48
-
-
0029783934
-
Neighborhood Behavior: A Useful Concept for Validation of "Molecular Diversity" Descriptors
-
Patterson, D. E.; Cramer, R. D.; Ferguson, A. M.; Clark, R. D.; Weinberger, L. E. Neighborhood Behavior: A Useful Concept for Validation of "Molecular Diversity" Descriptors. J. Med. Chem. 1996, 39, 3049-3059.
-
(1996)
J. Med. Chem
, vol.39
, pp. 3049-3059
-
-
Patterson, D.E.1
Cramer, R.D.2
Ferguson, A.M.3
Clark, R.D.4
Weinberger, L.E.5
-
49
-
-
0030943408
-
Selecting Optimally Diverse Compounds From Structure Databases: A Validation Study of Two-Dimensional and Three-Dimensional Molecular Descriptors
-
Matter, H. Selecting Optimally Diverse Compounds From Structure Databases: A Validation Study of Two-Dimensional and Three-Dimensional Molecular Descriptors. J. Med. Chem. 1997, 40, 1219-1229.
-
(1997)
J. Med. Chem
, vol.40
, pp. 1219-1229
-
-
Matter, H.1
-
50
-
-
0037068532
-
-
Martin, Y. C.; Kofron, J. L.; Traphagen, L. M. Do Structurally Similar Molecules Have Similar Biological Activity? J. Med. Chem. 2002, 45, 4350-4358.
-
Martin, Y. C.; Kofron, J. L.; Traphagen, L. M. Do Structurally Similar Molecules Have Similar Biological Activity? J. Med. Chem. 2002, 45, 4350-4358.
-
-
-
|