Use of surface plasmon resonance imaging to study viral RNA:protein interactions

Journal of Virological Methods

Volumn 147, Issue 1, 2008, Pages 18-25

  Garcia II, Bradley H ^a   Goodman, Robert M ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Microarray; Surface plasmon resonance imaging (SPRi); Tobacco mosaic virus (TMV); Viral assembly

Indexed keywords

CAPSID PROTEIN; GLASS; GOLD; MONOMER; NUCLEIC ACID; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; COVALENT BOND; DEFECTIVE VIRUS; DNA PROBE; IN VITRO STUDY; MICROARRAY ANALYSIS; NONHUMAN; PLANT VIRUS; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN ASSEMBLY; PROTEIN ISOLATION; PROTEIN RNA BINDING; PROTEIN STRUCTURE; RED CLOVER NECROTIC MOSAIC VIRUS; RNA SEQUENCE; SURFACE PLASMON RESONANCE; TECHNOLOGY; TOBACCO; VIRION; VIRUS ASSEMBLY; VIRUS GENOME; VIRUS PARTICLE;

CAPSID; CAPSID PROTEINS; MICROARRAY ANALYSIS; RNA, VIRAL; SURFACE PLASMON RESONANCE; TOBACCO MOSAIC VIRUS; VIRAL PROTEINS;

MIRIDAE; NICOTIANA TABACUM; RED CLOVER NECROTIC MOSAIC VIRUS; TOBACCO MOSAIC VIRUS;

EID: 37049006742     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2007.08.002     Document Type: Article

References (22)

1. Boedtker H., and Simmons N.S. The preparation and characterization of essentially uniform tobacco mosaic virus particles. J. Am. Chem. Soc. 80 (1958) 2550-2556
2. Brockman J.M., Frutos A.G., and Corn R.M. A multistep chemical modification procedure to create DNA arrays on gold surfaces for the study of protein-DNA interactions with surface plasmon resonance imaging. J. Am. Chem. Soc. 121 (1999) 8044-8051
3. Brockman J.M., Nelson B.P., and Corn R.M. Surface plasmon resonance imaging measurements of ultrathin organic films. Annu. Rev. Phys. Chem. 51 (2000) 41-63
4. Butler P.J., and Klug A. Assembly of the particle of tobacco mosaic virus from RNA and disks of protein. Nat. New Biol. 229 (1971) 47-50
5. Dawson W.O., Beck D.L., Knorr D.A., and Grantham G.L. cDNA cloning of the complete genome of tobacco mosaic virus and production of infectious transcripts. Proc. Natl. Acad. Sci. U.S.A. 83 (1986) 5043-5047
6. Durham A.C. Structures and roles of the polymorphic forms of tobacco mosaic virus protein. I. Sedimentation studies. J. Mol. Biol. 67 (1972) 289-305
7. Fraenkel-Conrat H. Degradation of tobacco mosaic virus with acetic acid. Virology 4 (1957) 1-4
8. Frutos A.G., Liu Q., Thiel A.J., Sanner A.M., Condon A.E., Smith L.M., and Corn R.M. Demonstration of a word design strategy for DNA computing on surfaces. Nucleic Acids Res. 25 (1997) 4748-4757
9. Guo Z., Guilfoyle R.A., Thiel A.J., Wang R., and Smith L.M. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res. 22 (1994) 5456-5465
10. Klug A. The tobacco mosaic virus particle: structure and assembly. Philos. Trans. R. Soc. London B. Biol. Sci. 354 (1999) 531-535
11. Maillart E., Brengel-Pesce K., Capela D., Roget A., Livache T., Canva M., Levy Y., and Soussi T. Versatile analysis of multiple macromolecular interactions by SPR imaging: application to p53 and DNA interaction. Oncogene 23 (2004) 5543-5550
12. Nelson B.P., Grimsrud T.E., Liles M.R., Goodman R.M., and Corn R.M. Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal. Chem. 73 (2001) 1-7
13. Nelson B.P., Liles M.R., Frederick K.B., Corn R.M., and Goodman R.M. Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging. Environ. Microbiol. 4 (2002) 735-743
14. Smith E.A., Thomas W.D., Kiessling L.L., and Corn R.M. Surface plasmon resonance imaging studies of protein-carbohydrate interactions. J. Am. Chem. Soc. 125 (2003) 6140-6148
15. Thiel A.J., Frutos A.G., Jordan C.E., Corn R.M., and Smith L.M. In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces. Anal. Chem. 69 (1997) 4948-4956
16. Turner D.R., McGuigan C.J., and Butler P.J. Assembly of hybrid RNAs with tobacco mosaic virus coat protein. Evidence for incorporation of disks in 5′-elongation along the major RNA tail. J. Mol. Biol. 209 (1989) 407-422
17. Valverde R.A., Heick J.A., and Dodds J.A. Interactions between satellite tobacco mosaic virus, helper tobamoviruses, and their hosts. Phytopathology 81 (1991) 99-104
18. Wegner G.J., Lee H.J., and Corn R.M. Characterization and optimization of peptide arrays for the study of epitope-antibody interactions using surface plasmon resonance imaging. Anal. Chem. 74 (2002) 5161-5168
19. Wegner G.J., Lee H.J., Marriott G., and Corn R.M. Fabrication of histidine-tagged fusion protein arrays for surface plasmon resonance imaging studies of protein-protein and protein-DNA interactions. Anal. Chem. 75 (2003) 4740-4746
20. Wegner G.J., Wark A.W., Lee H.J., Codner E., Saeki T., Fang S., and Corn R.M. Real-time surface plasmon resonance imaging measurements for the multiplexed determination of protein adsorption/desorption kinetics and surface enzymatic reactions on peptide microarrays. Anal. Chem. 76 (2004) 5677-5684
21. Xiong Z., and Lommel S.A. Red clover necrotic mosaic virus infectious transcripts synthesized in vitro. Virology 182 (1991) 388-392
22. Zimmern D., and Butler P.J. The isolation of tobacco mosaic virus RNA fragments containing the origin for viral assembly. Cell 11 (1977) 455-462