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1
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4644231820
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Synthesis and properties of novel base-discriminating fluorescent (BDF) nucleosides: A highly polarity-sensitive fluorophore for SNP typing
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For a recent example see
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For a recent example see: Saito, Y.; Miyauchi, Y.; Okamoto, A.; Saito, I. Synthesis and properties of novel base-discriminating fluorescent (BDF) nucleosides: a highly polarity-sensitive fluorophore for SNP typing. Tetrahedron Lett. 2004, 45, 7827-7831.
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(2004)
Tetrahedron Lett
, vol.45
, pp. 7827-7831
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Saito, Y.1
Miyauchi, Y.2
Okamoto, A.3
Saito, I.4
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2
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33646438071
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Synthesis and properties of a new fluorescent bicyclic 4-N-carbamoyldeoxycytidine Derivative
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Miyata, K.; Tamamushi, R.; Ohkubo, A.; Taguchi, H.; Seio, K.; Santa, T.; Sekine, M. Synthesis and properties of a new fluorescent bicyclic 4-N-carbamoyldeoxycytidine Derivative. Org. Lett. 2006, 8, 1545-1548.
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(2006)
Org. Lett
, vol.8
, pp. 1545-1548
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Miyata, K.1
Tamamushi, R.2
Ohkubo, A.3
Taguchi, H.4
Seio, K.5
Santa, T.6
Sekine, M.7
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3
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0036308302
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Fluorescent nucleotide analogs as probes of nucleic acid structure, dynamics and interactions
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Rist, M. J.; Marino, J. P. Fluorescent nucleotide analogs as probes of nucleic acid structure, dynamics and interactions. Curr. Org. Chem. 2002, 6, 775-793.
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(2002)
Curr. Org. Chem
, vol.6
, pp. 775-793
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Rist, M.J.1
Marino, J.P.2
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4
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0000684310
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Although the use of pyrrolcytosine is a relatively recent phenomenon it was first described some time ago. The first synthesis of pyrrolocytidine from cytidine nucleoside was described by: Inoue, H, Imura, A, Ohtsuka, E. Synthesis of dodecadeoxyribonucleotides containing a pyrrolo[2,3-d]pyrimidine nucleoside and their base-pairing ability Nippon Kagaku Kaishi 1987, 7, 1214-1220
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Although the use of pyrrolcytosine is a relatively recent phenomenon it was first described some time ago. The first synthesis of pyrrolocytidine from cytidine nucleoside was described by: Inoue, H.; Imura, A.; Ohtsuka, E. Synthesis of dodecadeoxyribonucleotides containing a pyrrolo[2,3-d]pyrimidine nucleoside and their base-pairing ability Nippon Kagaku Kaishi 1987, 7, 1214-1220.
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5
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0035804928
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Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase
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Martin, C.T.; Liu, C. Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase. J. Mol. Biol. 2001, 308, 465-475.
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(2001)
J. Mol. Biol
, vol.308
, pp. 465-475
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Martin, C.T.1
Liu, C.2
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6
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0037169496
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Promoter clearance by T7 RNA polymerase: Initial bubble collapse and transcript dissociation monitored by base analog fluorescence
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Martin, C.T.; Liu, C. Promoter clearance by T7 RNA polymerase: initial bubble collapse and transcript dissociation monitored by base analog fluorescence. J. Biol. Chem. 2002, 277, 2725-2731.
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(2002)
J. Biol. Chem
, vol.277
, pp. 2725-2731
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Martin, C.T.1
Liu, C.2
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7
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1642576006
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A general strategy to convert the MerR family proteins into highly sensitive and selective fluorescent biosensors for metal ions
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Chen, P.; He, C. A general strategy to convert the MerR family proteins into highly sensitive and selective fluorescent biosensors for metal ions. J. Am. Chem. Soc. 2004, 126, 728-729.
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(2004)
J. Am. Chem. Soc
, vol.126
, pp. 728-729
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Chen, P.1
He, C.2
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8
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2542572539
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Using pyrrolodeoxycytosine to probe RNA/DNA hybrids containing the human immunodeficiency virus type-1 3 polypurine tract
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Dash, C.; Raush, J. W.; Le Grice, S. F. J. Using pyrrolodeoxycytosine to probe RNA/DNA hybrids containing the human immunodeficiency virus type-1 3 polypurine tract. Nucleic Acids Res. 2004, 32, 1539-1547.
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(2004)
Nucleic Acids Res
, vol.32
, pp. 1539-1547
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Dash, C.1
Raush, J.W.2
Le Grice, S.F.J.3
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9
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18844429998
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Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolocytosine
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Johnson, N. P.; Baase, W. A.; von Hippel, P. H. Investigating local conformations of double-stranded DNA by low-energy circular dichroism of pyrrolocytosine. Proc. Nat. Acad. Sci. USA 2005, 102, 7169-7173.
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(2005)
Proc. Nat. Acad. Sci. USA
, vol.102
, pp. 7169-7173
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Johnson, N.P.1
Baase, W.A.2
von Hippel, P.H.3
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10
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33646051268
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Molecular beacons with intrinsically fluorescent nucleotides
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34, e50/1-e50/7
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Marti, A. A.; Jockusch, S.; Li, Z.; Ju, J.; Turro, N. J. Molecular beacons with intrinsically fluorescent nucleotides. Nucleic Acids Res. 2006, 34, e50/1-e50/7.
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(2006)
Nucleic Acids Res
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Marti, A.A.1
Jockusch, S.2
Li, Z.3
Ju, J.4
Turro, N.J.5
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11
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8644282758
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Fluorescent 7-deazapurine derivatives from 5-iodocytosine via a tandem cross-coupling/ annulation reaction
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Hudson, R. H. E.; Dambenieks, A. K.; Viirre, R. D. Fluorescent 7-deazapurine derivatives from 5-iodocytosine via a tandem cross-coupling/ annulation reaction. Synlett. 2004, 13, 2400-2402.
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(2004)
Synlett
, vol.13
, pp. 2400-2402
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Hudson, R.H.E.1
Dambenieks, A.K.2
Viirre, R.D.3
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12
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33244464247
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Hudson, R. H. E.; Dambenieks, A. K.; Moszynski, J. M. New fluorescent nucleobases derived from 5- alkynylpyrimidines. Proceedings of SPIE: Photonic Applications in Biosensing and Imaging, Toronto, 2005, 5969, 59690J1-J10.
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Hudson, R. H. E.; Dambenieks, A. K.; Moszynski, J. M. New fluorescent nucleobases derived from 5- alkynylpyrimidines. Proceedings of SPIE: Photonic Applications in Biosensing and Imaging, Toronto, 2005, 5969, 59690J1-J10.
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13
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33746904385
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Synthesis of N1-unsubstituted 5-alkynylcytosine and derivatives thereof
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Hudson, R. H. E.; Dambenieks, A. K. Synthesis of N1-unsubstituted 5-alkynylcytosine and derivatives thereof. Heterocycles 2006, 68, 1325-1328.
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(2006)
Heterocycles
, vol.68
, pp. 1325-1328
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Hudson, R.H.E.1
Dambenieks, A.K.2
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14
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17144414126
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Properties of a new fluorescent cytosine analogue, pyrrolocytosine
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Thompson, K. C.; Norimune, M. Properties of a new fluorescent cytosine analogue, pyrrolocytosine. J. Phys. Chem. B 2005, 109, 6012-6019.
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(2005)
J. Phys. Chem. B
, vol.109
, pp. 6012-6019
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Thompson, K.C.1
Norimune, M.2
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15
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36949011674
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Mep-dC phosphoramidite reagent is available from Glen Research, Sterling, Virginia, USA 20164.
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Mep-dC phosphoramidite reagent is available from Glen Research, Sterling, Virginia, USA 20164.
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16
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1242338125
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Berry, D. A.; Jung, K.-Y.; Wise, D. S.; Sercel, A. D.; Pearson, W. H.; Mackie, H.; Randolph, J. B.; Somers, R. L. Pyrrolo-dC and pyrrolo-C: Fluorescent analogs of cytidine and 2′-deoxycytidine for the study of oligonucleotides. Tetrahedron Lett. 2004, 45, 2457-2461.
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Berry, D. A.; Jung, K.-Y.; Wise, D. S.; Sercel, A. D.; Pearson, W. H.; Mackie, H.; Randolph, J. B.; Somers, R. L. Pyrrolo-dC and pyrrolo-C: Fluorescent analogs of cytidine and 2′-deoxycytidine for the study of oligonucleotides. Tetrahedron Lett. 2004, 45, 2457-2461.
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17
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0029945838
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A previous different synthesis has been reported: Woo, J.; Meyer, R. B.; Gamper, H. B. Jr. G/C-modified oligodeoxynucleotides with selective complementarity: synthesis and hybridization properties. Nucleic Acids Res. 1996, 24, 2470-2475.
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A previous different synthesis has been reported: Woo, J.; Meyer, R. B.; Gamper, H. B. Jr. G/C-modified oligodeoxynucleotides with selective complementarity: synthesis and hybridization properties. Nucleic Acids Res. 1996, 24, 2470-2475.
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