Möbius: An integrated discrete-event modeling environment

Bioinformatics

Volumn 23, Issue 24, 2007, Pages 3412-3414

  Peccoud, Jean ^a   Courtney, Tod ^b   Sanders, William H ^b  

^a VIRGINIA BIOINFORMATICS INSTITUTE   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER LANGUAGE; COMPUTER PROGRAM; COMPUTER SIMULATION; GENETIC ALGORITHM; INFORMATION PROCESSING; INTERNET; MUTANT; PHENOTYPE; PRIORITY JOURNAL; SIMULATOR; STOCHASTIC MODEL;

EID: 36949009847     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm517     Document Type: Article

References (13)

1. Banks,J. (2005) Discrete-event System Simulation. Pearson Prentice Hall, Upper Saddle River, NJ.
2. Daly,D. et al. (2000) Möbius: An extensible tool for performance and dependability modeling. Comput. Perform. Eval. Proc. 1786, 332-336.
3. Deavours,D.D. et al. (2002) The Möbius framework and its implementation. IEEE Trans. Softw. Eng., 28, 956-969.
4. Derisavi,S. et al. (2002) The Mb̈ius state-level abstract functional interface. Comput. Perform. Eval. Modell. Tech. Tools, 2324, 31-50.
5. Derisavi,S. et al. (2004) Symbolic state-space exploration and numerical analysis of state-sharing composed models. Linear Algebra and Its Applications, 386, 137-166.
6. Gardner,T.S. et al. (2000) Construction of a genetic toggle switch in Escherichia coli. Nature, 403, 339-342.
7. Gillespie,D.T. (2006) Stochastic simulation of chemical kinetics. Annu. Rev. Phys. Chem., 58, 35-55.
8. Goss,P.J.E. and Peccoud J. (1998) Quantitative modeling of stochastic systems in molecular biology using stochastic Petri nets. Proc. Natl Acad. Sci. USA, 95, 6750-6755.
9. Griffith,M. et al. (2006) Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network. Bioinformatics, 22, 2782-2789.
10. Hoops,S. et al. (2006) COPASI: A COmplex PAthway SImulator. Bioinformatics, 22, 3067-3074.
11. Peccoud,J. et al. (2004) The selective values of alleles in a molecular network model are context dependent. Genetics, 166 1715-1725.
12. Raser, J.M. and O'Shea,E.K. (2005) Noise in gene expression: Origins, consequences, and control. Science, 309, 2010-2013.
13. Thomas,R. and D'Ari,R. (1990) Biological Feedback. CRC Press, Boca Raton, Florida.