Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (Open Access publication)

Genetics Selection Evolution

Volumn 39, Issue 6, 2007, Pages 633-650

  Jaffrézic, Florence ^a   De Koning, Dirk Jan ^b   Boettcher, Paul J ^c   Bonnet, Agnès ^a   Buitenhuis, Bart ^d   Closset, Rodrigue ^e   Déjean, Sébastien ^f   Delmas, Céline ^a   Detilleux, Johanne C ^e   Dovč, Peter ^g   Duval, Mylène ^a   Foulley, Jean Louis ^a   Hedegaard, Jakob ^d   Hornshøj, Henrik ^d   Hulsegge, Ina ^h   Janss, Luc ^d   Jensen, Kirsty ^b   Jiang, Li ^d   Lavrič, Miha ^g   Lê Cao, Kim Anh ^a,f   Lund, Mogens Sandø ^d   Malinverni, Roberto ^c   Marot, Guillemette ^a   Nie, Haisheng ^h   Petzl, Wolfram ⁱ   Pool, Marco H ^h   Robert Granié, Christèle ^a   San Cristobal, Magali ^a   Van Schothorst, Evert M ^h   Schuberth, Hans Joachim ^j   Sørensen, Peter ^d   Stella, Alessandra ^c   Tosser Klopp, Gwenola ^a   Waddington, David ^b   Watson, Michael ^k   Yang, Wei ^l   Zerbe, Holm ⁱ   Seyfert, Hans Martin ^l   more..

^a CEMAGREF   (France)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

^c PARCO TECNOLOGICO PADANO   (Italy)

^d AARHUS UNIVERSITY   (Denmark)

^e UNIVERSITY OF LIÈGE   (Belgium)

^f UNIVERSITÉ DE TOULOUSE   (France)

^g UNIVERSITY OF LJUBLJANA   (Slovenia)

^h WAGENINGEN UNIVERSITY   (Netherlands)

ⁱ UNIVERSITY OF MUNICH   (Germany)

^j UNIVERSITY OF VETERINARY MEDICINE HANNOVER   (Germany)

^k INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

^l LEIBNIZ INSTITUTE FOR FARM ANIMAL BIOLOGY FBN   (Germany)

more..

Author keywords

Differentially expressed genes; Mastitis resistance; Microarray data; Normalisation; Quality control

Indexed keywords

BACTERIAL DISEASE; COMPARATIVE STUDY; DATA ASSIMILATION; DATA SET; DISEASE RESISTANCE; GENE EXPRESSION; INFECTIOUS DISEASE; MOLECULAR ANALYSIS; QUALITY CONTROL;

ANALYSIS OF VARIANCE; ANIMAL; ANIMAL DISEASE; ARTICLE; CATTLE; CATTLE DISEASE; COMPARATIVE STUDY; COMPUTER PROGRAM; DNA MICROARRAY; DOMESTIC ANIMAL; ENTEROBACTER INFECTION; EPIDEMIOLOGY; EUROPE; FEMALE; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENETICS; PRACTICE GUIDELINE; QUALITY CONTROL; STANDARD; STAPHYLOCOCCUS INFECTION; STATISTICAL ANALYSIS; STATISTICS;

ANALYSIS OF VARIANCE; ANIMALS; ANIMALS, DOMESTIC; BIAS (EPIDEMIOLOGY); CATTLE; DATA INTERPRETATION, STATISTICAL; DATABASES, GENETIC; ESCHERICHIA COLI INFECTIONS; EUROPE; FEMALE; GENE EXPRESSION PROFILING; GUIDELINES AS TOPIC; MASTITIS, BOVINE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; QUALITY CONTROL; SOFTWARE; STAPHYLOCOCCAL INFECTIONS;

ANIMALIA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; STAPHYLOCOCCUS AUREUS;

EID: 36849076230     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1051/gse:2007029     Document Type: Article

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