Artificial neural network study of whole-cell bacterial bioreporter response determined using fluorescence flow cytometry

Analytical Chemistry

Volumn 79, Issue 23, 2007, Pages 9107-9114

  Busam, Sirisha ^a   McNabb, Maia ^a   Wackwitz, Anke ^b   Senevirathna, Wasana ^a   Beggah, Siham ^c   Van Der Meer, Jan Roelof ^c   Wells, Mona ^a   Breuer, Uta ^b   Harms, Hauke ^b  

^a TENNESSEE TECHNOLOGICAL UNIVERSITY   (United States)

^b HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

^c UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOASSAY; COMPUTATIONAL EFFICIENCY; FLOW CYTOMETRY; NEURAL NETWORKS;

BIOREPORTER RESPONSE; FLUORESCENT BIOREPORTERS; INTRAPOPULATION RESPONSE VARIABILITY;

BIOSENSORS;

ARSENIC; GREEN FLUORESCENT PROTEIN;

ADAPTIVE BEHAVIOR; ALGORITHM; ARTICLE; ARTIFICIAL NEURAL NETWORK; BACTERIAL BIOREPORTER; BIOSENSOR; CHEMICAL ANALYSIS; CHEMICAL REACTION KINETICS; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; ESCHERICHIA COLI; FLOW CYTOMETRY; FLUORESCENCE ANALYSIS; NONHUMAN; PERCEPTRON; RESPONSE VARIABLE; SCREENING; WHOLE CELL;

ALGORITHMS; BACTERIA; FLOW CYTOMETRY; FLUORESCENCE; NEURAL NETWORKS (COMPUTER);

EID: 36849036915     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0713508     Document Type: Article

References (26)

1. Belkin, S. Curr. Opin. Microbiol. 2003, 6, 206-212.
2. Kohler, S.; Belkin, S.; Schmid, R. D. Fresenius' J. Anal. Chem. 2000, 366, 769-779.
3. van der Meer, J. R.; Tropel, D.; Jaspers, M. Environ. Microbiol. 2004, 6, 1005-1020.
4. Kohlmeier, S.; Mancuso, M.; Deepthike, U.; Tecon, R.; van der Meer, J. R.; Harms, H.; Wells, M. Environ. Pollut. submitted for publication.
5. Wells, M. Curr. Opin. Biotechnol. 2006, 17, 28-33.
6. Bahl, M. I.; Hansen, L. H.; Licht, T. R.; Sorensen, S. J. Antimicrob. Agents Chemother. 2004, 48, 1112-1117.
7. Bahl, M. I.; Hansen, L. H.; Sorensen, S. J. FEMS Microbiol. Lett. 2005, 253, 201-205.
8. Burmolle, M.; Hansen, L. H.; Sorensen, S. J. Microb. Ecol. 2005, 50, 221-229.
9. Hansen, L. H.; Ferrari, B.; Sorensen, A. H.; Veal, D.; Sorensen, S. J. Appl. Environ. Microbiol. 2001, 67, 239-244.
10. Norman, A.; Hansen, L. H.; Sorensen, S. J. Mutat. Res., Genet. Toxicol. Environ. Mutagen. 2006, 603, 164-172.
11. Miller, W. G.; Brandi, M. T.; Quinones, B.; Lindow, S. E. Appl. Environ. Microbiol. 2001, 67, 1308-1317.
12. Stiner, L.; Halverson, L. J. Appl. Environ. Microbiol. 2002, 68, 1962-1971.
13. Wells, M.; Gösch, M.; Harms, H.; van der Meer, J. R. Microchim. Acta 2005, 151, 209-216.
14. Kohlmeier, S.; Mancuso, M.; Tecon, R.; Harms, H.; van der Meer, J. R.; Wells, M. Biosens. Bioelectron. 2007, 22, 1578-1585.
15. Kuang, Y.; Biran, I.; Walt, D. R. Anal. Chem. 2004, 76, 6282-6286.
16. White, J.; Kauer, J. S.; Dickinson, T. A.; Walt, D. R. Anal. Chem. 1996, 68, 2191-2202.
17. Stocker, J.; Balluch, D.; Gsell, M.; Harms, H.; Feliciano, J.; Daunert, S.; Malik, K. A.; Van der Meer, J. R. Environ. Sci. Technol. 2003, 37, 4743-4750.
18. Jaspers, M. C.; Suske, W. A.; Schmid, A.; Goslings, D. A.; Kohler, H. P.; van der Meer, J. R. J. Bacteriol. 2000, 182, 405-417.
19. Wells, M.; Gösch, M.; Rigler, R.; Harms, H.; Lasser, T.; van der Meer, J. R. Anal. Chem. 2005, 77, 2683-2689.
20. Haupts, U.; Maiti, S.; Schwille, P.; Webb, W. W. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 13573-13578.
21. Boddy, L.; Wilkins, M. F.; Morris, C. W. Cytometry 2001, 44, 195-209.
22. Ressom, H. W.; Natarajan, P. In Bioinformatics; Yan, P. V., Ed.; Nova Science Publishers: New York, 2005; pp 1-25.
23. Song, X.-H.; Hopke, P. K.; Fergenson, D. P.; Prather, K. A. Anal. Chem. 1999, 71, 860-865.
24. Fu, L.; Yang, M.; Braylan, R.; Benson, N. Pattern Recognit. 1993, 2, 365-373.
25. Mucha, H.-J.; Battel, H.-G. In Innovations in Classification, Data Science, and Information Systems; Baier, D., Wernecke, K.-D., Eds.; Springer: Berlin, 2005.
26. Bishop, C. M. Neural Networks for Pattern Recognition; Oxford University Press: Oxford, 1995.