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Volumn 8, Issue 1, 2008, Pages 74-82

The importance of setting the right genetic distance threshold for identification of clones using amplified fragment length polymorphism: A case study with five species in the tropical plant genus Piper

Author keywords

AFLP; Asexual recruitment; Clones; Evenness index; Fingerprint dissimilarities; Genetic diversity

Indexed keywords

PIPERACEAE;

EID: 36849001849     PISSN: 1755098X     EISSN: 14718286     Source Type: Journal    
DOI: 10.1111/j.1471-8286.2007.01910.x     Document Type: Article
Times cited : (25)

References (34)
  • 1
    • 0031597552 scopus 로고    scopus 로고
    • Molecular genetic analysis of black poplar (Populus nigra L.) along Dutch rivers
    • Arens P, Coops H, Jansen J, Vosman B (1998) Molecular genetic analysis of black poplar (Populus nigra L.) along Dutch rivers. Molecular Ecology, 7, 11 18.
    • (1998) Molecular Ecology , vol.7 , pp. 11-18
    • Arens, P.1    Coops, H.2    Jansen, J.3    Vosman, B.4
  • 2
    • 0035556796 scopus 로고    scopus 로고
    • Relative contributions of sexual and asexual regeneration strategies in Populus nigra and Salix alba during the first years of establishment on a braided gravel bed river
    • Barsoum N (2001) Relative contributions of sexual and asexual regeneration strategies in Populus nigra and Salix alba during the first years of establishment on a braided gravel bed river. Evolutionary Ecology, 15, 255 279.
    • (2001) Evolutionary Ecology , vol.15 , pp. 255-279
    • Barsoum, N.1
  • 3
    • 0033065894 scopus 로고    scopus 로고
    • The effects of regeneration by fragmentation upon clonal diversity in the tropical forest shrub Poikilacanthus macranthus: Random amplified polymorphic DNA (RAPD) results
    • Bush SP, Mulcahy DL (1999) The effects of regeneration by fragmentation upon clonal diversity in the tropical forest shrub Poikilacanthus macranthus: random amplified polymorphic DNA (RAPD) results. Molecular Ecology, 8, 865 870.
    • (1999) Molecular Ecology , vol.8 , pp. 865-870
    • Bush, S.P.1    Mulcahy, D.L.2
  • 4
    • 0035557113 scopus 로고    scopus 로고
    • Consequences of clonal growth for plant mating
    • Charpentier A (2001) Consequences of clonal growth for plant mating. Evolutionary Ecology, 15, 521 530.
    • (2001) Evolutionary Ecology , vol.15 , pp. 521-530
    • Charpentier, A.1
  • 5
    • 0034077218 scopus 로고    scopus 로고
    • Clonal and spatial genetic structure in Eurya emarginata (Theaceae)
    • Chung MG, Epperson BK (2000) Clonal and spatial genetic structure in Eurya emarginata (Theaceae). Heredity, 84, 170 177.
    • (2000) Heredity , vol.84 , pp. 170-177
    • Chung, M.G.1    Epperson, B.K.2
  • 6
    • 25144504895 scopus 로고    scopus 로고
    • Clonal and fine-scale genetic structure in populations of a restricted Korean endemic, Hosta jonesii (Liliaceae) and the implications for conservation
    • Chung MY, Suh Y, Lopez-Pujol J, Nason JD, Chung MG (2005) Clonal and fine-scale genetic structure in populations of a restricted Korean endemic, Hosta jonesii (Liliaceae) and the implications for conservation. Annals of Botany, 96, 279 288.
    • (2005) Annals of Botany , vol.96 , pp. 279-288
    • Chung, M.Y.1    Suh, Y.2    Lopez-Pujol, J.3    Nason, J.D.4    Chung, M.G.5
  • 7
    • 13444274754 scopus 로고    scopus 로고
    • Clonal diversity and distribution in Stenocereus eruca (Cactaceae), a narrow endemic cactus of the Sonoran Desert
    • Clark-Tapia R, Alfonso-Corrado C, Eguiarte LE, Molina-Freaner F (2005) Clonal diversity and distribution in Stenocereus eruca (Cactaceae), a narrow endemic cactus of the Sonoran Desert. American Journal of Botany, 92, 272 278.
    • (2005) American Journal of Botany , vol.92 , pp. 272-278
    • Clark-Tapia, R.1    Alfonso-Corrado, C.2    Eguiarte, L.E.3    Molina-Freaner, F.4
  • 9
    • 0038115470 scopus 로고    scopus 로고
    • Intra-clonal variation and a similarity threshold for identification of clones: Application to Salix exigua using AFLP molecular markers
    • Douhovnikoff V, Dodd RS (2003) Intra-clonal variation and a similarity threshold for identification of clones: application to Salix exigua using AFLP molecular markers. Theoretical and Applied Genetics, 106, 1307 1315.
    • (2003) Theoretical and Applied Genetics , vol.106 , pp. 1307-1315
    • Douhovnikoff, V.1    Dodd, R.S.2
  • 10
    • 14844343782 scopus 로고    scopus 로고
    • Incidence, size and spatial structure of clones in second-growth stands of coast redwood, Sequoia sempervirens (Cupressaceae)
    • Douhovnikoff V, Cheng AM, Dodd RS (2004) Incidence, size and spatial structure of clones in second-growth stands of coast redwood, Sequoia sempervirens (Cupressaceae). American Journal of Botany, 91, 1140 1146.
    • (2004) American Journal of Botany , vol.91 , pp. 1140-1146
    • Douhovnikoff, V.1    Cheng, A.M.2    Dodd, R.S.3
  • 11
    • 0033918412 scopus 로고    scopus 로고
    • Contribution of autogamy and geitonogamy to self-fertilization in a mass-flowering, clonal plant
    • Eckert CG (2000) Contribution of autogamy and geitonogamy to self-fertilization in a mass-flowering, clonal plant. Ecology, 81, 532 542.
    • (2000) Ecology , vol.81 , pp. 532-542
    • Eckert, C.G.1
  • 12
    • 0023487928 scopus 로고
    • Patterns of genotypic diversity in clonal plant species
    • Ellstrand NC, Roose ML (1987) Patterns of genotypic diversity in clonal plant species. American Journal of Botany, 74, 123 131.
    • (1987) American Journal of Botany , vol.74 , pp. 123-131
    • Ellstrand, N.C.1    Roose, M.L.2
  • 13
    • 0028162717 scopus 로고
    • Stochastic population dynamics of clonal plants: Numerical experiments with ramet and genet models
    • Eriksson O (1994) Stochastic population dynamics of clonal plants: numerical experiments with ramet and genet models. Ecological Research, 9, 257 268.
    • (1994) Ecological Research , vol.9 , pp. 257-268
    • Eriksson, O.1
  • 14
    • 0031828013 scopus 로고    scopus 로고
    • Clonal diversity in a Rhododendron ferrugineum L. (Ericaceae) population inferred from AFLP markers
    • Escaravage N, Questiau S, Pornon A, Doche B, Taberlet P (1998) Clonal diversity in a Rhododendron ferrugineum L. (Ericaceae) population inferred from AFLP markers. Molecular Ecology, 7, 975 982.
    • (1998) Molecular Ecology , vol.7 , pp. 975-982
    • Escaravage, N.1    Questiau, S.2    Pornon, A.3    Doche, B.4    Taberlet, P.5
  • 15
    • 0027884056 scopus 로고
    • Regeneration mode in Neotropical Piper: Habitat and species comparisons
    • Greig N (1993) Regeneration mode in Neotropical Piper: habitat and species comparisons. Ecology, 74, 2125 2135.
    • (1993) Ecology , vol.74 , pp. 2125-2135
    • Greig, N.1
  • 16
    • 0022226947 scopus 로고
    • The intrusion of clonal growth patterns on plant breeding systems
    • Handel SN (1985) The intrusion of clonal growth patterns on plant breeding systems. American Naturalist, 125, 367 384.
    • (1985) American Naturalist , vol.125 , pp. 367-384
    • Handel, S.N.1
  • 17
    • 0033993478 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism (AFLP) markers reveal that population structure of triploid dandelions (Taraxacum officinale) exhibits both clonality and recombination
    • van der Hulst RGM, Mes THM, den Nijs JCM, Bachmann K (2000) Amplified fragment length polymorphism (AFLP) markers reveal that population structure of triploid dandelions (Taraxacum officinale) exhibits both clonality and recombination. Molecular Ecology, 9, 1 8.
    • (2000) Molecular Ecology , vol.9 , pp. 1-8
    • Van Der Hulst, R.G.M.1    Mes, T.H.M.2    Den Nijs, J.C.M.3    Bachmann, K.4
  • 19
    • 0034749673 scopus 로고    scopus 로고
    • Genotypic diversity and clonal structure of Everglades sawgrass, Cladium jamaicense (Cyperaceae)
    • Ivey CT, Richards JH (2001) Genotypic diversity and clonal structure of Everglades sawgrass, Cladium jamaicense (Cyperaceae). International Journal of Plant Sciences, 162, 1327 1335.
    • (2001) International Journal of Plant Sciences , vol.162 , pp. 1327-1335
    • Ivey, C.T.1    Richards, J.H.2
  • 20
    • 0001488651 scopus 로고    scopus 로고
    • Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories
    • Jones CJ, Edwards KJ, Castaglione S et al 1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding, 3, 381 390.
    • (1997) Molecular Breeding , vol.3 , pp. 381-390
    • Jones, C.J.1    Edwards, K.J.2    Castaglione, S.3    Al, E.4
  • 21
    • 0033676395 scopus 로고    scopus 로고
    • Evidence of sexuality in European Rubus (Rosaceae) species based on AFLP and allozyme analysis
    • Kollmann J, Steinger T, Roy BA (2000) Evidence of sexuality in European Rubus (Rosaceae) species based on AFLP and allozyme analysis. American Journal of Botany, 87, 1592 1598.
    • (2000) American Journal of Botany , vol.87 , pp. 1592-1598
    • Kollmann, J.1    Steinger, T.2    Roy, B.A.3
  • 24
    • 9644266571 scopus 로고    scopus 로고
    • Genotype and genodive: Two programs for the analysis of genetic diversity of asexual organisms
    • Meirmans PG, Van Tienderen PH (2004) genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes, 4, 792 794.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 792-794
    • Meirmans, P.G.1    Van Tienderen, P.H.2
  • 25
    • 0034998253 scopus 로고    scopus 로고
    • Analysis of clonal structure of Melaleuca cajuputi (Myrtaceae) at a barren sandy site in Thailand using microsatellite polymorphism
    • Miwa M, Tanaka R, Yamanoshita T et al 2001) Analysis of clonal structure of Melaleuca cajuputi (Myrtaceae) at a barren sandy site in Thailand using microsatellite polymorphism. Trees - Structure and Function, 15, 242 248.
    • (2001) Trees - Structure and Function , vol.15 , pp. 242-248
    • Miwa, M.1    Tanaka, R.2    Yamanoshita, T.3    Al, E.4
  • 27
    • 0027868357 scopus 로고
    • A study of spatial features of clones in a population of bracken fern, Pteridium aquilinum (Dennstaedtiaceae)
    • Parks JC, Werth CR (1993) A study of spatial features of clones in a population of bracken fern, Pteridium aquilinum (Dennstaedtiaceae). American Journal of Botany, 80, 537 544.
    • (1993) American Journal of Botany , vol.80 , pp. 537-544
    • Parks, J.C.1    Werth, C.R.2
  • 28
    • 0001322967 scopus 로고
    • Structure of clones of northern prickly ash (Xanthoxylum americanum
    • Reinartz JA, Popp JW (1987) Structure of clones of northern prickly ash (Xanthoxylum americanum). American Journal of Botany, 74, 415 428.
    • (1987) American Journal of Botany , vol.74 , pp. 415-428
    • Reinartz, J.A.1    Popp, J.W.2
  • 29
    • 0001205998 scopus 로고
    • Reproduction in Neotropical shrubs: The occurrence and some mechanisms of asexuality
    • Sagers CL (1993) Reproduction in Neotropical shrubs: the occurrence and some mechanisms of asexuality. Ecology, 74, 615 618.
    • (1993) Ecology , vol.74 , pp. 615-618
    • Sagers, C.L.1
  • 30
    • 0038129889 scopus 로고    scopus 로고
    • Mlgsim: A program for detecting clones using a simulation approach
    • Stenberg P, Lundmark M, Saura A (2003) mlgsim: a program for detecting clones using a simulation approach. Molecular Ecology Notes, 3, 329 331.
    • (2003) Molecular Ecology Notes , vol.3 , pp. 329-331
    • Stenberg, P.1    Lundmark, M.2    Saura, A.3
  • 31
    • 0035556414 scopus 로고    scopus 로고
    • The ecology and evolutionary biology of clonal plants: An introduction to the proceedings of Clone-2000
    • Stuefer JF, Erschbamer B, Huber H, Suzuki JI (2001) The ecology and evolutionary biology of clonal plants: an introduction to the proceedings of Clone-2000. Evolutionary Ecology, 15, 223 230.
    • (2001) Evolutionary Ecology , vol.15 , pp. 223-230
    • Stuefer, J.F.1    Erschbamer, B.2    Huber, H.3    Suzuki, J.I.4
  • 32
    • 0001006574 scopus 로고
    • The role of seed production in the dynamics of established populations of Hieracium floribundum and a comparison with that of vegetative reproduction
    • Thomas AG, Dale HM (1975) The role of seed production in the dynamics of established populations of Hieracium floribundum and a comparison with that of vegetative reproduction. Canadian Journal of Botany, 53, 3022 3031.
    • (1975) Canadian Journal of Botany , vol.53 , pp. 3022-3031
    • Thomas, A.G.1    Dale, H.M.2
  • 34
    • 0031907809 scopus 로고    scopus 로고
    • A study of genetic diversity in Populus nigra subsp. betulifolia in the Upper Severn area of the UK using AFLP markers
    • Winfield MO, Arnold GM, Cooper F et al 1998) A study of genetic diversity in Populus nigra subsp. betulifolia in the Upper Severn area of the UK using AFLP markers. Molecular Ecology, 7, 3 10.
    • (1998) Molecular Ecology , vol.7 , pp. 3-10
    • Winfield, M.O.1    Arnold, G.M.2    Cooper, F.3    Al, E.4


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