A comparative gene expression profile of the whole eye from human, mouse, and guinea pig

Molecular Vision

Volumn 13, Issue , 2007, Pages 2214-2221

  Zhou, Xiangtian ^a,b   Wang, Weiwei ^c   Lu, Fan ^a,b   Hu, Songnian ^c   Jiang, Liqin ^a,b   Yan, Dongsheng ^a,b   Zhang, Xiaowei ^c   Yu, Xiaomin ^c   Yu, Jun ^c   Qu, Jia ^a,b  

^a WENZHOU MEDICAL UNIVERSITY   (China)

^b Zhejiang Provincial Key Laboratory of Ophthalmology and Optometry   (China)

^c Chinese Academy of Sciences and China National Center for Bioinformation   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; CRYSTALLIN; DECORIN; MESSENGER RNA; RECOVERIN; RHODOPSIN;

5' UNTRANSLATED REGION; ARTICLE; CORRELATION ANALYSIS; DNA LIBRARY; EXPERIMENTAL MODEL; EXPRESSED SEQUENCE TAG; GENBANK; GENE EXPRESSION; GENE EXPRESSION PROFILING; GUINEA PIG; HUMAN; MEDICAL RESEARCH; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ISOLATION; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; VISUAL SYSTEM FUNCTION;

ADULT; ANIMALS; DATABASES, GENETIC; DATABASES, PROTEIN; EXPRESSED SEQUENCE TAGS; EYE; EYE PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LIBRARY; GUINEA PIGS; HUMANS; MALE; MICE; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EID: 36749091181     PISSN: None     EISSN: 10900535     Source Type: Journal    
DOI: None     Document Type: Article

References (25)

1. Han J, Little M, David LL, Giblin FJ, Schey KL. Sequence and peptide map of guinea pig aquaporin 0. Mol Vis 2004; 10:215-22.
2. Bantseev V, Oriowo OM, Giblin FJ, Leverenz VR, Trevithick JR, Sivak JG. Effect of hyperbaric oxygen on guinea pig lens optical quality and on the refractive state of the eye. Exp Eye Res 2004; 78:925-31.
3. Lei B. The ERG of guinea pig (Cavis porcellus): comparison with I-type monkey and E-type rat. Doc Ophthalmol 2003; 106:243-9.
4. Lu F, Zhou X, Zhao H, Wang R, Jia D, Jiang L, Xie R, Qu J. Axial myopia induced by a monocularly-deprived facemask in guinea pigs: A non-invasive and effective model. Exp Eye Res 2006; 82:628-36.
5. Zhou X, Lu F, Xie R, Jiang L, Wen J, Li Y, Shi J, He T, Qu J. Recovery from axial myopia induced by a monocularly deprived facemask in adolescent (7-week-old) guinea pigs. Vision Res 2007; 47:1103-11.
6. McFadden SA, Howlett MR, Mertz JR. Retinoic acid signals the direction of ocular elongation in the guinea pig eye. Vision Res 2004; 44:643-53.
7. Howlett MH, McFadden SA. Form-deprivation myopia in the guinea pig (Cavia porcellus). Vision Res 2006; 46:267-83.
8. Howlett MR, McFadden SA. Emmetropization and schematic eye models in developing pigmented guinea pigs. Vision Res 2007; 47:1178-90.
9. Woerpel RW, Rosskopf WJ Jr. Avian-exotic animal care guides. Goleta (CA): American Veterinary publication; 1988.
10. Wistow G. The NEIBank project for ocular genomics: data-mining gene expression in human and rodent eye tissues. Prog Retin Eye Res 2006; 25:43-77.
11. Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998; 8:186-94.
12. Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998; 8:195-202.
13. Romualdi C, Bortoluzzi S, D' Alessi F, Danieli GA. IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiol Genomics 2003; 12:159-62.
14. Romualdi C, Bortoluzzi S, Danieli GA. Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests. Hum Mol Genet 2001; 10:2133-41.
15. Sasaki J, Phillips BJ, Chen X, Van Eps N, Tsai AL, Hubbell WL, Spudich JL. Different dark conformations function in color-sensitive photosignaling by the sensory rhodopsin I-HtrI complex. Biophys J 2007; 92:4045-53.
16. Sokolov M, Strissel KJ, Leskov IB, Michaud NA, Govardovskii VI, Arshavsky VY. Phosducin facilitates light-driven transducin translocation in rod photoreceptors. Evidence from the phosducin knockout mouse. J Biol Chem 2004; 279:19149-56.
17. Brown BM, Carlson BL, Zhu X, Lolley RN, Craft CM. Light-driven translocation of the protein phosphatase 2A complex regulates light/dark dephosphorylation of phosducin and rhodopsin. Biochemistry 2002; 41:13526-38.
18. Murakami A, Yajima T, Inana G. Isolation of human retinal genes: recoverin cDNA and gene. Biochem Biophys Res Commun 1992; 187:234-44.
19. Kelliher P, Connor TJ, Harkin A, Sanchez C, Kelly JP, Leonard BE. Varying responses to the rat forced-swim test under diurnal and nocturnal conditions. Physiol Behav 2000 Jun 1-15; 69:531-9.
20. Cheng MY, Bittman EL, Hattar S, Zhou QY. Regulation of prokineticin 2 expression by light and the circadian clock. BMC Neurosci 2005; 6:17.
21. Fuller CA, Ishihama LM, Murakami DM. The regulation of rat activity following exposure to hyperdynamic fields. Physiologist 1993; 36:S121-2.
22. Ogden AT, Nunes I, Ko K, Wu S, Hines CS, Wang AF, Hegde RS, Lang RA. GRIFIN, a novel lens-specific protein related to the galectin family. J Biol Chem 1998; 273:28889-96.
23. Ida H, Boylan SA, Weigel AL, Smit-McBride Z, Chao A, Gao J, Buchoff P, Wistow G, Hjelmeland LM. EST analysis of mouse retina and RPE/choroid cDNA libraries. Mol Vis 2004; 10:439-44.
24. Allikmets R, Seddon JM, Bernstein PS, Hutchinson A, Atkinson A, Sharma S, Gerrard B, Li W, Metzker ML, Wadelius C, Caskey CT, Dean M, Petrukhin K. Evaluation of the Best disease gene in patients with age-related macular degeneration and other maculopathies. Hum Genet 1999; 104:449-53.
25. Rada JA, Nickla DL, Troilo D. Decreased proteoglycan synthesis associated with form deprivation myopia in mature primate eyes. Invest Ophthalmol Vis Sci 2000; 41:2050-8.