-
1
-
-
0039095512
-
Bacterial oxidation of vitamin B6. I. Isopyridoxal and 5-pyridoxic acid
-
Rodwell, V. W., Volcani, B. E., Ikawa, M., and Snell, E. E. (1958) Bacterial oxidation of vitamin B6. I. Isopyridoxal and 5-pyridoxic acid, J. Biol. Chem. 233, 1548-1554.
-
(1958)
J. Biol. Chem
, vol.233
, pp. 1548-1554
-
-
Rodwell, V.W.1
Volcani, B.E.2
Ikawa, M.3
Snell, E.E.4
-
2
-
-
85012583553
-
The Metabolism of Vitamin B6
-
Elsevier/North Holland, New York
-
Snell, E. E., and Haskell, B. E. (1971) The Metabolism of Vitamin B6, in Comprehensive Biochemistry, Vol. 21, pp 47-71, Elsevier/North Holland, New York.
-
(1971)
Comprehensive Biochemistry
, vol.21
, pp. 47-71
-
-
Snell, E.E.1
Haskell, B.E.2
-
3
-
-
2342626462
-
The nitrogen-fixing symbiotic bacterium Mesorhizobium loti has and expresses the gene encoding pyridoxine 4-oxidase involved in the degradation of vitamin B6
-
Yuan, B., Yoshikane, Y., Yokochi, N., Ohnishi, K., and Yagi, T. (2004) The nitrogen-fixing symbiotic bacterium Mesorhizobium loti has and expresses the gene encoding pyridoxine 4-oxidase involved in the degradation of vitamin B6, FEMS Microbiol. Lett. 234, 225-230.
-
(2004)
FEMS Microbiol. Lett
, vol.234
, pp. 225-230
-
-
Yuan, B.1
Yoshikane, Y.2
Yokochi, N.3
Ohnishi, K.4
Yagi, T.5
-
4
-
-
27844451953
-
4-Pyridoxolactonase from a symbiotic nitrogen-fixing bacterium Mesorhizobium loti: Cloning, expression, and characterization
-
Funami, J., Yoshikane, Y., Kobayashi, H., Yokochi, N., Yuan, B., Iwasaki, K., Ohnishi, K., and Yagi, T. (2005) 4-Pyridoxolactonase from a symbiotic nitrogen-fixing bacterium Mesorhizobium loti: cloning, expression, and characterization, Biochim. Biophys. Acta 1753, 234-239.
-
(2005)
Biochim. Biophys. Acta
, vol.1753
, pp. 234-239
-
-
Funami, J.1
Yoshikane, Y.2
Kobayashi, H.3
Yokochi, N.4
Yuan, B.5
Iwasaki, K.6
Ohnishi, K.7
Yagi, T.8
-
5
-
-
33746303411
-
Identification of a new tetrameric pyridoxal 4-dehydrogenase as the second enzyme in the degradation pathway for pyridoxine in a nitrogen-fixing symbiotic bacterium, Mesorhizobium loti
-
Yokochi, N., Nishimura, S., Yoshikane, Y., Ohnishi, K., and Yagi, T. (2006) Identification of a new tetrameric pyridoxal 4-dehydrogenase as the second enzyme in the degradation pathway for pyridoxine in a nitrogen-fixing symbiotic bacterium, Mesorhizobium loti, Arch. Biochem. Biophys. 452, 1-8.
-
(2006)
Arch. Biochem. Biophys
, vol.452
, pp. 1-8
-
-
Yokochi, N.1
Nishimura, S.2
Yoshikane, Y.3
Ohnishi, K.4
Yagi, T.5
-
6
-
-
33846515841
-
Molecular cloning, identification and characterization of 2-methyl-3- hydroxypyridine-5-carboxylic-acid-dioxygenase-coding gene from the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
-
Yuan, B., Yokochi, N., Yoshikane, Y., Ohnishi, K., and Yagi, T. (2006) Molecular cloning, identification and characterization of 2-methyl-3- hydroxypyridine-5-carboxylic-acid-dioxygenase-coding gene from the nitrogen-fixing symbiotic bacterium Mesorhizobium loti, J. Biosci. Bioeng. 102, 504-510.
-
(2006)
J. Biosci. Bioeng
, vol.102
, pp. 504-510
-
-
Yuan, B.1
Yokochi, N.2
Yoshikane, Y.3
Ohnishi, K.4
Yagi, T.5
-
7
-
-
35448952959
-
-
Mukherjee, T., Kinsland, C., and Begley, T. P. (2007) PLP catabolism: Identification of the 4-Pyridoxic acid Dehydrogenase gene in Mesorhizobium loti MAFF303099. Bioorg. Chem., DOI: 10.1016/j.bioorg.2007.07.003.
-
Mukherjee, T., Kinsland, C., and Begley, T. P. (2007) PLP catabolism: Identification of the 4-Pyridoxic acid Dehydrogenase gene in Mesorhizobium loti MAFF303099. Bioorg. Chem., DOI: 10.1016/j.bioorg.2007.07.003.
-
-
-
-
8
-
-
36749057916
-
-
http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|266835.1.peg. 5335&user=&48hr_job=new_framework=0.
-
http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|266835.1.peg. 5335&user=&48hr_job=new_framework=0.
-
-
-
-
10
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Plainview, New York
-
Sambrook, J., Fritsch, G. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Guide, Cold Spring Harbor Laboratory Press, Plainview, New York.
-
(1989)
Molecular Cloning: A Laboratory Guide
-
-
Sambrook, J.1
Fritsch, G.F.2
Maniatis, T.3
-
11
-
-
4544234688
-
Bacterial Oxidation Of Vitamin B6. Iv. Enzymatic Decarboxylation Of 2-Methyl-3-Hydroxypyridine-4,5-Dicarboxylic Acid.]
-
Snell, E. E., Smucker, A. A., Ringelmann, E., and Lynen, F. (1964) [Bacterial Oxidation Of Vitamin B6. Iv. Enzymatic Decarboxylation Of 2-Methyl-3-Hydroxypyridine-4,5-Dicarboxylic Acid.], Biochem. Z 341, 109-119.
-
(1964)
Biochem. Z
, vol.341
, pp. 109-119
-
-
Snell, E.E.1
Smucker, A.A.2
Ringelmann, E.3
Lynen, F.4
-
12
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B. W. (1968) Solvent content of protein crystals, J. Mol. Biol. 33, 491-497.
-
(1968)
J. Mol. Biol
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
13
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
14
-
-
4644366388
-
HKL2MAP: A graphical user interface for phasing with SHELX programs
-
Pape, T., and Schneider, T. R. (2004) HKL2MAP: a graphical user interface for phasing with SHELX programs, J. Appl. Crystallogr. 37, 843-844.
-
(2004)
J. Appl. Crystallogr
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
15
-
-
36549027357
-
Automated Structure Solution With autoSHARP
-
Vonrhein, C., Blanc, E., Roversi, P., and Bricogne, G. (2006) Automated Structure Solution With autoSHARP, Methods Mol. Biol. 364, 215-230.
-
(2006)
Methods Mol. Biol
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
16
-
-
13244281317
-
Coot: Model-Building Tools for Molecular Graphics
-
Cowtan, P. E. a. K. (2004) Coot: Model-Building Tools for Molecular Graphics, Acta Crystallogr. D 60, 2126-2132.
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Cowtan, P.E.A.K.1
-
17
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D 54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
18
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
20
-
-
0001308921
-
A rapid approximation to the solvent-accessible surface areas of atoms
-
Hasel, W., Hendrickson, T. F., and Still, W. C. (1988) A rapid approximation to the solvent-accessible surface areas of atoms, Tetrahedron Comput. Methodol. 1, 103-16.
-
(1988)
Tetrahedron Comput. Methodol
, vol.1
, pp. 103-116
-
-
Hasel, W.1
Hendrickson, T.F.2
Still, W.C.3
-
21
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
22
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
Gouet, P., Courcelle, E., Stuart, D. I., and Metoz, F. (1999) ESPript: analysis of multiple sequence alignments in PostScript, Bioinformatics 15, 305-308.
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
23
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
24
-
-
0037361704
-
Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63
-
Habe, H., Miyakoshi, M., Chung, J., Kasuga, K., Yoshida, T., Nojiri, H., and Omori, T. (2003) Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63, Appl. Microbiol. Biotechnol. 61, 44-54.
-
(2003)
Appl. Microbiol. Biotechnol
, vol.61
, pp. 44-54
-
-
Habe, H.1
Miyakoshi, M.2
Chung, J.3
Kasuga, K.4
Yoshida, T.5
Nojiri, H.6
Omori, T.7
-
25
-
-
0034991776
-
Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B
-
Eaton, R. W. (2001) Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B, J. Bacteriol. 183, 3689-3703.
-
(2001)
J. Bacteriol
, vol.183
, pp. 3689-3703
-
-
Eaton, R.W.1
-
26
-
-
0031865006
-
Touring protein fold space with Dali/FSSP
-
Holm, L., and Sander, C. (1998) Touring protein fold space with Dali/FSSP, Nucleic Acids Res. 26, 316-319.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 316-319
-
-
Holm, L.1
Sander, C.2
-
27
-
-
0029942857
-
Catalytic mechanism of the metal-dependent fuculose aldolase from Escherichia coli as derived from the structure
-
Dreyer, M. K., and Schulz, G. E. (1996) Catalytic mechanism of the metal-dependent fuculose aldolase from Escherichia coli as derived from the structure, J. Mol. Biol. 259, 458-466.
-
(1996)
J. Mol. Biol
, vol.259
, pp. 458-466
-
-
Dreyer, M.K.1
Schulz, G.E.2
-
28
-
-
0035846627
-
The structure of L-ribulose-5-phosphate 4-epimerase: An aldolase-like platform for epimerization
-
Luo, Y., Samuel, J., Mosimann, S. C., Lee, J. E., Tanner, M. E., and Strynadka, N. C. (2001) The structure of L-ribulose-5-phosphate 4-epimerase: an aldolase-like platform for epimerization, Biochemistry 40, 14763-14771.
-
(2001)
Biochemistry
, vol.40
, pp. 14763-14771
-
-
Luo, Y.1
Samuel, J.2
Mosimann, S.C.3
Lee, J.E.4
Tanner, M.E.5
Strynadka, N.C.6
-
29
-
-
0036014784
-
The structure of L-rhamnulose-1-phosphate aldolase (class II) solved by low-resolution SIR phasing and 20-fold NCS averaging
-
Kroemer, M., and Schulz, G. E. (2002) The structure of L-rhamnulose-1-phosphate aldolase (class II) solved by low-resolution SIR phasing and 20-fold NCS averaging, Acta Crystallogr D. Biol. Crystallogr. 58, 824-832.
-
(2002)
Acta Crystallogr D. Biol. Crystallogr
, vol.58
, pp. 824-832
-
-
Kroemer, M.1
Schulz, G.E.2
-
30
-
-
4644237751
-
Enzymatic reactions involving novel mechanisms of carbanion stabilization
-
Begley, T. P., and Ealick, S. E. (2004) Enzymatic reactions involving novel mechanisms of carbanion stabilization, Curr. Opin. Chem. Biol. 8, 508-515.
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 508-515
-
-
Begley, T.P.1
Ealick, S.E.2
-
31
-
-
0035997393
-
Catalytic proficiency: The unusual case of OMP decarboxylase
-
Miller, B. G., and Wolfenden, R. (2002) Catalytic proficiency: the unusual case of OMP decarboxylase, Annu. Rev. Biochem. 71, 847-885.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 847-885
-
-
Miller, B.G.1
Wolfenden, R.2
-
32
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) The Protein Data Bank, Nucleic Acids Res. 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
33
-
-
0035846643
-
Catalysis and binding in L-ribulose-5-phosphate 4-epimerase: A comparison with L-fuculose-1-phosphate aldolase
-
Samuel, J., Luo, Y., Morgan, P. M., Strynadka, N. C., and Tanner, M. E. (2001) Catalysis and binding in L-ribulose-5-phosphate 4-epimerase: a comparison with L-fuculose-1-phosphate aldolase, Biochemistry 40, 14772-14780.
-
(2001)
Biochemistry
, vol.40
, pp. 14772-14780
-
-
Samuel, J.1
Luo, Y.2
Morgan, P.M.3
Strynadka, N.C.4
Tanner, M.E.5
|