Pilot study of an EST approach of the coccolithophorid Emiliania huxleyi during a virus infection

Gene

Volumn 406, Issue 1-2, 2007, Pages 209-216

  Kegel, Jessica ^a   Allen, Michael J ^b   Metfies, Katja ^a   Wilson, William H ^c   Wolf Gladrow, Dieter ^a   Valentin, Klaus ^a  

^a ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^b PLYMOUTH MARINE LABORATORY   (United Kingdom)

^c BIGELOW LABORATORY FOR OCEAN SCIENCES   (United States)

Author keywords

Coccolithophore; EhV 86; Emiliania huxleyi; EST sequencing

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME;

ARTICLE; CONTROLLED STUDY; EMILIANIA HUXLEYI; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE IDENTIFICATION; GENE LIBRARY; GENE REPLICATION; GENETIC TRANSCRIPTION; NONHUMAN; PHYLOGENY; PHYTOPLANKTON; PILOT STUDY; PRIORITY JOURNAL; PROTEIN DEGRADATION; VIRUS GENE; VIRUS INFECTION;

EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENE LIBRARY; PLANT DISEASES; PLANT VIRUSES; PLANTS;

ALGAE; EMILIANIA HUXLEYI; HAPTOPHYCEAE;

EID: 36749016669     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.10.007     Document Type: Article

References (51)

1. Allen M.J., Schroeder D.C., Holden M.T.G., and Wilson W.H. Evolutionary history of the Coccolithoviridae. Mol. Biol. Evol. 23 (2006) 86-92
2. Allen M.J., Martinez-Martinez J., Schroeder D.C., Somerfield P.J., and Wilson W.H. Use of microarrays to assess viral diversity: from genotype to phenotype. Environ. Microbiol. 9 (2007) 971-982
3. Balch W.M., Holligan P.M., Ackleson S.G., and Voss K.J. Biological and optical properties of mesoscale coccolithophore blooms in the Gulf of Maine. Limnol. Oceanogr. 36 (1991) 629-643
4. Balch W.M., Holligan P.M., and Kilpatrick A.K. Calcification, photosynthesis and growth of the bloom-forming coccolithophore, Emiliania huxleyi. Cont. Shelf Res. 12 (1992) 1353-1374
5. Barnes W.M. PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates. Proc. Natl. Acad. Sci. USA 91 (1994) 2216-2220
6. Baumann K.H., Böckel B., and Frenz M. Coccolith contribution to South Atlantic carbonate sedimentation. In: Thierstein H.R., and Young J.R. (Eds). Coccolithophores (2004), Springer-Verlag, Berlin Heidelberg 367-402
7. Bergh O., Borsheim K.Y., Bratbak G., and Heldal M. High abundance of viruses found in aquatic environments. Nature 340 (1989) 467-468
8. Bratbak G., Egge J.K., and Heldal M. Viral mortality of the marine alga Emiliania huxleyi (Haptophyceae) and termination of algal blooms. Mar. Ecol. Prog. Ser. 93 (1993) 39-48
9. Bratbak G., et al. Viral activity in relation to Emiliania huxleyi blooms: a possible mechanism of DMSP release? Mar. Ecol. Prog. Ser. 128 (1995) 133-142
10. Bratbak G., Wilson W., and Heldal M. Viral control of Emiliania huxleyi blooms? J. Mar. Syst. 9 (1996) 75-81
11. Brown C.W., and Yoder J.A. Blooms of Emiliania huxleyi (Prymnesiophyceae) in surface waters of the Nova Scotian shelf and the Grand Bank. J. Plankton. Res. 15 (1994) 1429-1438
12. Brussaard C.P.D., Kempers R.S., Kop A.J., Riegman R., and Heldal M. Virus like particles in a summer bloom of Emiliania huxleyi in the North Sea. Aquat. Microb. Ecol. 10 (1996) 105-113
13. Castberg T., et al. Microbial population dynamics and diversity during a bloom of the marine coccolithophorid Emiliania huxleyi (Haptophyta). Mar. Ecol. Prog. Ser. 221 (2001) 39-46
14. Castberg T., et al. Isolation and characterization of a virus that infects Emiliania huxleyi (Haptophyta). J. Phycol. 38 (2002) 767-774
15. Charlson R.J., Lovelock J.E., Andreae M.O., and Warren S.G. Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate. Nature (Lond.) 326 (1987) 655-661
16. Eide L.D. Distribution of coccolithophorids in surface sediments in the Norwegian-Greenland Sea. Mar. Micropaleontol. 16 (1990) 65-75
17. Fuhrmann J.A. Marine viruses and their biogeochemical and ecological effects. Nature (Lond.) 399 (1999) 541-548
18. Guillard R.R.L. Culture of phytoplankton for feeding marine invertebrates. In: Smith W.L., and Chanley M.H. (Eds). Culture of Marine Invertebrate Animals (1975), Plenum Press, New York 29-60
19. Hanekamp K., Bohnebeck U., Beszteri B., and Valentin K. PhyloGena - a system for automated phylogenetic annotation of (algal) expressed sequence tags (EST), genes and genomes. Bioinformatics 23 7 (2007) 793-801 10.1093/bioinformatics/btm016
20. Hay W.W., Mohler H.P., Roth P.H., Schmidt R.R., and Boudreaux J.E. Calcareous nannoplankton zonation of the Gulf Coast and Caribbean-Antillean area and transatlantic correlation. Trans. Gulf Coastal Assoc. Geol. Soc. 17 (1967) 428-480
21. Hedge P., et al. A concise guide to cDNA microarray analysis. BioTechniques 29 (2000) 548-562
22. Holligan P.M., Viollier M., Harbour D.S., Camus P., and Champagne-Philippe M. Satellite and ship studies of coccolithophore production along a continental shelf edge. Nature (Lond.) 304 (1983) 339-342
23. Holligan P.M., et al. A biogeochemical study of the coccolithophore Emiliania huxleyi in the north Atlantic. Glob. Biogeochem. Cycles 7 (1993) 879-900
24. Jacobsen A., Bratbak G., and Heldal M. Isolation and characterization of a virus infecting Phaeocystis pouchetii (Prymnesiophyceae). J. Phycol. 32 (1996) 923-927
25. Jaquet S., Heldal M., Iglesias-Rodriguez D., Larsen A., Wilson W., and Bratbak G. Flow cytometric analysis of an Emiliania huxleyi bloom terminated by viral infection. Aquat. Microb. Ecol. 27 (2002) 111-124
26. Lohmann H. Die Coccolithophoridae, eine Monographie der Coccolithen bildenden Flagellaten. Zugleich ein Beitrag zur Kenntnis des Mittelmeerauftriebs. Arch. Protistenk. 1 (1902) 89-165
27. Malin G., Liss P.S., and Turner S.M. Dimethyl sulphide: production and atmospheric consequences. In: Green J.C., and Leadbeater B.S.C. (Eds). The haptophyte algae. Syst. Assoc. Spec. Vol. vol. 51 (1994), Clarendon Press, Oxford 303-320
28. Nagasaki K., and Yamaguchi M. Isolation of a virus infectious to the harmful bloom causing microalga Heterosigma akashiwo (Raphidophyceae). Aquat. Microb. Ecol. 13 (1997) 135-140
29. Nagasaki K., Ando M., Imai I., Itakura S., and Ishida Y. Virus-like particles in Heterosigma akashiwo (Raphidophyceae): a possible red tide disintegration mechanism. Mar. Biol. 119 (1994) 307-312
30. Nagasaki K., Ando M., Itakura S., Imai I., and Ishida Y. Viral mortality in the final stage of Heterosigma akashiwo (Raphidophyceae) red tide. J. Plankton Res. 16 (1994) 1595-1599
31. Rafalski J.A., et al. New experimental and computational approaches to the analysis of gene expression. Acta Biochim. Pol. 45 (1998) 929-934
32. Samtleben C., and Bickert T. Coccoliths in sediment traps from the Norwegian Sea. Mar. Micropaleontol. 16 (1990) 39-64
33. Sandaa R.A., Heldal M., Castber T., Thyrhaug R., and Bratbak G. Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae). Virology 290 (2001) 272-280
34. Sanger F., Nickeln S., and Coulson A.R. DNA-sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74 (1977) 5463-5467
35. Schmitt A.O., Specht T., Beckmann G., Dahl E., Pilarsky C.P., Hinzmann B., and Rosenthal A. Exhaustive mining of EST libraries for genes differentially expressed in normal and tumour tissues. Nucl. Acids Res. 27 (1999) 4251-4260
36. Schroeder D.C., Oke J., Malin G., and Wilson W.H. Coccolithovirus (Phycodnaviridae): characterization of a new large dsDNA algal virus that infects Emiliania huxleyi. Arch. Virol. 147 (2002) 1685-1698
37. Schroeder D.C., Oke J., Hall M., Malin G., and Wilson W.H. Virus Succession Observed during an Emiliania huxleyi Bloom. Appl. Environ. Microbiol. 69 (2003) 2484-2490
38. Seaton G.G.R., Lee K., and Rohozinski J. Photosynthetic shutdown in Chlorella NC64A associated with the infection cycle of Paramecium bursaria Chlorella Virus-1. Plant Physiol. 108 (1995) 1431-1438
39. Suttle C.A. Ecological, evolutionary, and geochemical consequences of viral infection of cyanobacteria and eukaryotic algae. In: Hurst C.J. (Ed). Viral Ecology (2000), Academic Press, New York 247-296
40. Van Etten J.L., and Meints R.H. Giant viruses infecting algae. Annu. Rev. Microbiol. 53 (1999) 447-494
41. Van Etten J.L., Lane L.C., and Meints R.H. Viruses and virus-like particles of eukaryotic algae. Microbiol. Rev. 55 (1991) 586-620
42. Van Etten J.L., Graves M.V., Müller D.G., Boland W., and Delaroque N. Phycodnaviridae - large DNA algal viruses. Arch. Virol. 147 (2002) 1479-1516
43. Westbroek P., et al. A model system approach to climate forcing. The example of Emiliania huxleyi. Glob. Planet Change 8 (1993) 27-46
44. Westbroek P., et al. Emiliania huxleyi as a key to biosphere-geosphere interaction. In: Green J.C., and Leadbeater B. (Eds). The Haptophyte Algae (1994), Clarendon Press, Oxford 321-334
45. Wilhelm S.W., and Suttle C.A. Viruses and nutrients cycles in the sea - viruses play critical roles in the structure and function of aquatic food webs. Bioscience 49 (1999) 781-788
46. Wilson W.H., Turner S., and Mann N.H. Population dynamics of phytoplankton and viruses in a phosphate-limited mesocosm and their effect on DMSP and DMS production. Estuar. Coast. Shelf Sci. 46 (1998) 49-59
47. Wilson W.H., Tarran G.A., and Zubkov M.V. Virus dynamics in a coccolithophore dominated bloom in the north Sea. Deep Sea Res. 49 (2002) 2951-2963
48. Wilson W.H., Tarran G.A., Schroeder D.C., Cox M., Oke J., and Malin G. Isolation of viruses responsible for the demise of an Emiliania huxleyi bloom in the English Channel. J. Mar. Biol. Ass. U.K. 82 (2002) 369-377
49. Wilson W.H., et al. Complete genome sequence and lytic phase transcription profile of a Coccolithovirus. Science 309 (2005) 1090-1092
50. Winter A., Jordan R.W., and Roth P.H. Biogeography of living coccolithophores in ocean waters. In: Winter A., and Siesser W.G. (Eds). Coccolithophores (1994), Cambridge University Press, Cambridge, UK 161-177
51. Wommack K.E., and Colwell R.R. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64 (2000) 69-114