-
1
-
-
0033757840
-
From structure to function: Approaches and limitations
-
Thornton JM, Todd AE, Milburn D, Borkakoti N, Orengo CA. From structure to function: approaches and limitations. Nat Struct Biol 2000;7(Suppl):991-994.
-
(2000)
Nat Struct Biol
, vol.7
, Issue.SUPPL.
, pp. 991-994
-
-
Thornton, J.M.1
Todd, A.E.2
Milburn, D.3
Borkakoti, N.4
Orengo, C.A.5
-
2
-
-
0037832147
-
Protein informatics towards function identification
-
Kinoshita K, Nakamura H. Protein informatics towards function identification. Curr Opin Struct Biol 2003;13:396-400.
-
(2003)
Curr Opin Struct Biol
, vol.13
, pp. 396-400
-
-
Kinoshita, K.1
Nakamura, H.2
-
3
-
-
21644446565
-
Docking prediction using biological information. ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function
-
Zhang C, Liu S, Zhou Y. Docking prediction using biological information. ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function Proteins 2005;60:314-318.
-
(2005)
Proteins
, vol.60
, pp. 314-318
-
-
Zhang, C.1
Liu, S.2
Zhou, Y.3
-
4
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 2003;125:1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
5
-
-
14844358499
-
Experimental and computational characterization of the dimerization of the PTS-regulation domains of BglG from Escherichia coli
-
Ben-Zeev E, Fux L, Amster-Choder O, Eisenstein M. Experimental and computational characterization of the dimerization of the PTS-regulation domains of BglG from Escherichia coli. J Mol Biol 2005;347:693-706.
-
(2005)
J Mol Biol
, vol.347
, pp. 693-706
-
-
Ben-Zeev, E.1
Fux, L.2
Amster-Choder, O.3
Eisenstein, M.4
-
6
-
-
21644459373
-
Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility
-
Schueler-Furman O, Wang C, Baker D. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins 2005;60:187-194.
-
(2005)
Proteins
, vol.60
, pp. 187-194
-
-
Schueler-Furman, O.1
Wang, C.2
Baker, D.3
-
7
-
-
13244262600
-
Assessing predictions of protein-protein interaction: The CAPRI experiment
-
Janin J. Assessing predictions of protein-protein interaction: the CAPRI experiment. Protein Sci 2005;14:278-283.
-
(2005)
Protein Sci
, vol.14
, pp. 278-283
-
-
Janin, J.1
-
8
-
-
1842861590
-
Prediction of protein-protein interactions: The CAPRI experiment, its evaluation and implications
-
Wodak SJ, Mendez R. Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. Curr Opin Struct Biol 2004;14:242-249.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 242-249
-
-
Wodak, S.J.1
Mendez, R.2
-
9
-
-
0036288284
-
Identification of protein functions from a molecular surface database, eF-site
-
Kinoshita K, Furui J, Nakamura H. Identification of protein functions from a molecular surface database, eF-site. J Struct Funct Genomics 2002;2:9-22.
-
(2002)
J Struct Funct Genomics
, vol.2
, pp. 9-22
-
-
Kinoshita, K.1
Furui, J.2
Nakamura, H.3
-
10
-
-
14144254344
-
Identification of the ligand binding sites on the molecular surface of proteins
-
Kinoshita K, Nakamura H. Identification of the ligand binding sites on the molecular surface of proteins. Protein Sci 2005;14:711-718.
-
(2005)
Protein Sci
, vol.14
, pp. 711-718
-
-
Kinoshita, K.1
Nakamura, H.2
-
11
-
-
1242339659
-
A family of evolution-entropy hybrid methods for ranking protein residues by importance
-
Mihalek I, Res I, Lichtarge O. A family of evolution-entropy hybrid methods for ranking protein residues by importance. J Mol Biol 2004;336:1265-1282.
-
(2004)
J Mol Biol
, vol.336
, pp. 1265-1282
-
-
Mihalek, I.1
Res, I.2
Lichtarge, O.3
-
12
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly ML. Solvent-accessible surfaces of proteins and nucleic acids. Science 1983;221:709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 2003;31:365-370.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
16
-
-
33748107163
-
Analyses of homo-oligomer interfaces of proteins from the complementarity of molecular surface, electrostatic potential and hydrophobicity
-
Tsuchiya Y, Kinoshita K, Nakamura H. Analyses of homo-oligomer interfaces of proteins from the complementarity of molecular surface, electrostatic potential and hydrophobicity. Protein Eng Des Sel 2006;19:421-429.
-
(2006)
Protein Eng Des Sel
, vol.19
, pp. 421-429
-
-
Tsuchiya, Y.1
Kinoshita, K.2
Nakamura, H.3
-
17
-
-
0242299207
-
Atomic contact vectors in protein-protein recognition
-
Mintseris J, Weng Z. Atomic contact vectors in protein-protein recognition. Proteins 2003;53:629-639.
-
(2003)
Proteins
, vol.53
, pp. 629-639
-
-
Mintseris, J.1
Weng, Z.2
-
18
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 1975;405:442-451.
-
(1975)
Biochim Biophys Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
19
-
-
0042010066
-
Asymmetric mutation rates at enzyme-inhibitor interfaces: Implications for the protein-protein docking problem
-
Bradford JR, Westhead DR. Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem. Protein Sci 2003;12:2099-2103.
-
(2003)
Protein Sci
, vol.12
, pp. 2099-2103
-
-
Bradford, J.R.1
Westhead, D.R.2
-
20
-
-
0031569395
-
A cohesin domain from Clostridium thermocellum: The crystal structure provides new insights into cellulosome assembly
-
Shimon LJ, Bayer EA, Morag E, Lamed R, Yaron S, Shoham Y, Frolow F. A cohesin domain from Clostridium thermocellum: the crystal structure provides new insights into cellulosome assembly. Structure 1997;5:381-390.
-
(1997)
Structure
, vol.5
, pp. 381-390
-
-
Shimon, L.J.1
Bayer, E.A.2
Morag, E.3
Lamed, R.4
Yaron, S.5
Shoham, Y.6
Frolow, F.7
-
21
-
-
0346725950
-
The origin recognition complex and Sir4 protein recruit Sir1p to yeast silent chromatin through independent interactions requiring a common Sir1p domain
-
Bose ME, McConnell KH, Gardner-Aukema KA, Muller U, Weinreich M, Keck JL, Fox CA. The origin recognition complex and Sir4 protein recruit Sir1p to yeast silent chromatin through independent interactions requiring a common Sir1p domain. Mol Cell Biol 2004;24:774-786.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 774-786
-
-
Bose, M.E.1
McConnell, K.H.2
Gardner-Aukema, K.A.3
Muller, U.4
Weinreich, M.5
Keck, J.L.6
Fox, C.A.7
-
22
-
-
0037009519
-
Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing
-
Zhang Z, Hayashi MK, Merkel O, Stillman B, Xu RM. Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing. EMBO J 2002;21:4600-4611.
-
(2002)
EMBO J
, vol.21
, pp. 4600-4611
-
-
Zhang, Z.1
Hayashi, M.K.2
Merkel, O.3
Stillman, B.4
Xu, R.M.5
-
23
-
-
0032944877
-
A region of the Sir1 protein dedicated to recognition of a silencer and required for interaction with the Orc1 protein in Saccharomyces cerevisiae
-
Gardner KA, Rine J, Fox CA. A region of the Sir1 protein dedicated to recognition of a silencer and required for interaction with the Orc1 protein in Saccharomyces cerevisiae. Genetics 1999;151:31-44.
-
(1999)
Genetics
, vol.151
, pp. 31-44
-
-
Gardner, K.A.1
Rine, J.2
Fox, C.A.3
-
25
-
-
0033966170
-
Identification by genetic suppression of Escherichia coli TolB residues important for TolB-Pal interaction
-
Ray MC, Germon P, Vianney A, Portalier R, Lazzaroni JC. Identification by genetic suppression of Escherichia coli TolB residues important for TolB-Pal interaction. J Bacteriol 2000;182:821-824.
-
(2000)
J Bacteriol
, vol.182
, pp. 821-824
-
-
Ray, M.C.1
Germon, P.2
Vianney, A.3
Portalier, R.4
Lazzaroni, J.C.5
|