Changes in the abundance and composition of picophytoplankton in relation to the occurrence of a Kyucho and a bottom intrusion in the Bungo Channel, Japan

Estuarine, Coastal and Shelf Science

Volumn 76, Issue 2, 2008, Pages 293-303

  Hirose, Miho ^a   Katano, Toshiya ^b,c   Hayami, Yuichi ^a,d   Kaneda, Atsushi ^b   Kohama, Takeshi ^b   Takeoka, Hidetaka ^b   Nakano, Shin ichi ^a  

^a EHIME UNIVERSITY   (Japan)

^b EHIME UNIVERSITY   (Japan)

^c Hanyang University   (South Korea)

^d SAGA UNIVERSITY   (Japan)

Author keywords

bottom intrusion; flow cytometry; Kyucho; phycourobilin (PUB); picophytoplankton

Indexed keywords

ABUNDANCE; COMMUNITY COMPOSITION; FLOW CYTOMETRY; IGNEOUS INTRUSION; PICOPLANKTON; WATER TEMPERATURE;

ASIA; BUNGO CHANNEL; EURASIA; FAR EAST; JAPAN; PACIFIC OCEAN;

EUKARYOTA; PROCHLOROCOCCUS; SYNECHOCOCCUS;

EID: 36749000645     PISSN: 02727714     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecss.2007.07.030     Document Type: Article

References (42)

1. Agawin N.S.R., Duarte S.M., and Agusti S. Nutrient and temperature control of the contribution of picoplankton to phytoplankton biomass and production. Limnology and Oceanography 45 (2000) 591-600
2. Akiyama H., and Saitoh S. The Kyucho in Sukumo Bay induced by Kuroshio warm filament intrusion. Journal of Oceanography 49 (1993) 667-682
3. Biegala I.C., Not F., Vaulot D., and Simon N. Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry. Applied and Environmental Microbiology 69 (2003) 5519-5529
4. Biegala I.C., Cuttle M., Mary I., and Zubkov M.V. Hybridization of picoeukaryotes by eubacterial probes is widespread in the marine environment. Aquatic Microbial Ecology 41 (2005) 293-297
5. Campbell L., Landry M.R., Constanitinou J., Nolla H.A., Brown S.L., Liu H., and Caron D.A. Response of microbial community structure to environmental forcing in the Arabian Sea. Deep Sea Research 45 (1998) 2301-2325
6. Campbell L., and Vaulot D. Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (Station ALOHA). Deep Sea Research 40 (1993) 2043-2060
7. Cloern J.E., Cole B.E., Wong R.L.J., and Alpine A.E. Temporal dynamics of estuarine phytoplankton: a case study of San Francisco Bay. Hydrobiologia 129 (1985) 153-176
8. Everroad C., Six C., Partensky F., Thomas J.C., Holtzendorff J., and Wood A.M. Biochemical bases of type IV chromatic adaptation in marine Synechococcus spp. Journal of Bacteriology 188 (2006) 3345-3356
9. Fuller N., Marie D., Partensky F., Vaulot D., Post A.F., and Scanlan D. Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Applied and Environmental Microbiology 69 (2003) 2430-2443
10. Hayami Y., Kaneda A., Kohama T., Nakano S., and Takeoka H. Processes of nutrient supply from the open ocean and their implications for the ecosystem in the Bungo Channel. Engankaiyou Kenkyu 43 (2006) 143-149 (Japanese with English abstract)
11. Hayami Y., Ohgiyama S., Yamada Y., Takemura K., and Takeoka H. Seasonal and inter-annual variation in chlorophyll a concentration in Kitanada Bay, Uwa Sea. Suisan Kaiyou Kenkyu 69 (2005) 1-9 (Japanese with English abstract)
12. Ichinotsuka D., Ueno H., and Nakano S. Relative importance of nanoflagellates and ciliates as consumers of bacteria in a coastal sea area dominated by oligotrichous Strombidium and Strobilidium. Aquatic Microbial Ecology 42 (2006) 139-147
13. -1 on marine Synechococcus WH7803: I. Growth, pigmentation, and cell composition. Deep Sea Research 34 (1987) 479-495
14. Kaneda A., Takeoka H., Nagaura E., and Koizumi Y. Periodic intrusion of cold water from the Pacific Ocean into the bottom layer of the Bungo Channel in Japan. Journal of Oceanography 58 (2002) 547-556
15. Kaneda A., Takeoka H., and Koizumi Y. Periodic occurrence of diurnal signal of ADCP backscatter strength in Uchiumi Bay, Japan. Estuarine, Coastal and Shelf Science 55 (2002) 323-330
16. Katano T., Hirose M., and Nakano S. Discrimination of two phycoerythrin-pigment types of Synechococcus and their seasonal succession in the Uwa Sea. Microbes and Environments 19 (2004) 7-12
17. Katano T., Kaneda A., Takeoka H., and Nakano S. Seasonal changes in the abundance and composition of picophytoplankton in relation to the occurrence of Kyucho and bottom intrusion in Uchiumi Bay, Japan. Marine Ecology Progress Series 208 (2005) 59-67
18. Katano T., Kaneda A., Kanzaki N., Obayashi Y., Morimoto A., Onitsuka G., Yasuda H., Mizutani S., Kon Y., Hata K., Takeoka H., and Nakano S. Distribution of prokaryotic picophytoplankton from Seto Inland Sea to the Kuroshio region, with special reference to 'Kyucho' events. Aquatic Microbial Ecology 46 (2007) 191-201
19. Katano T., and Nakano S. Growth rates of Synechococcus types with different phycoerythrin composition estimated by dual-laser flow cytometry in relationship to the light environment in the Uwa Sea. Journal of Sea Research 55 (2006) 182-190
20. Kawabata Z., and Satake M. Changes in water movement, nutrient concentrations and phytoplankton biomass caused by the kyu-cho in a bay. Engankaiyou Kenkyu Note 30 (1992) 27-36 (Japanese with English abstract)
21. Koizumi Y. A process of water exchange in Shitaba Bay during the phenomenon of Kyucho. Engankaiyou Kenkyu Note 29 (1991) 82-89 (Japanese with English abstract)
22. Koizumi Y., and Kohno Y. An influence of the kyu-cho on a mechanism of diatom growth in Shitaba Bay in summer. Engankaiyou Kenkyu 32 (1994) 81-89 (Japanese with English abstract)
23. Koizumi Y., Nishikawa S., Yakushiji F., and Uchida T. Germination of resting stage cells and growth of vegetative cells in diatoms caused by Kyucho events. Suisan Kaiyou Kenkyu 61 (1997) 275-287 (Japanese with English abstract)
24. Llabres M., and Agusti S. Picophytoplankton cell death induced by UV radiation: evidence for oceanic Atlantic communities. Limnology and Oceanography 51 (2006) 21-29
25. Massana R., Balague V., Guillou L., and Pedros-Alio C. Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiology Ecology 50 (2004) 231-243
26. Montecino V., and Quiroz D. Specific primary production and phytoplankton cell size structure in an upwelling area off the coast of Chile (30°S). Aquatic Sciences - Research Across Boundaries 62 (2000) 364-380
27. Nakano S., Tomaru Y., Katano T., Kaneda A., Makino W., Nishibe Y., Hirose M., Onji M., Kitamura S.-I., and Takeoka H. The dynamics of microbial and herbivorous food webs in a coastal sea with special reference to intermittent nutrient supply from bottom intrusion. Aquatic Ecology 38 (2004) 485-493
28. Not F., Latasa M., Marie D., Cariou T., Vaulot D., and Simon N. Single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the western English Channel. Applied and Environmental Microbiology 70 (2004) 4064-4072
29. Not F., Simon N., Biegala I.C., and Vaulot D. Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition. Aquatic Microbial Ecology 28 (2002) 157-166
30. Not F., Valentin K., Romari K., Lovejoy C., Massana R., Tobe K., Vaulot D., and Medlin L. Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotes. Science 315 (2007) 252-254
31. Olson R.J., Chisholm S.W., Zettler E.R., and Armbrust E.V. Analysis of Synechococcus pigment types in the sea using single and dual beam flow cytometry. Deep Sea Research 35 (1988) 425-440
32. Olson R.J., Zettler E.R., and Durand M.D. Phytoplankton analysis using flow cytometry. In: Kemp P.F., Sherr B.F., Sherr E.B., and Cole J.J. (Eds). Handbook of Methods in Aquatic Microbial Ecology (1993), Lewis Publishers, Baca Raton
33. Olson R.J., Chisholm S.W., Zettler E.R., and Armbrust E.V. Pigments, size, and distribution of Synechococcus in the North Atlantic and Pacific Oceans. Limnology and Oceanography 35 (1990) 45-58
34. Palenik B. Chromatic adaptation in marine Synechococcus strains. Applied and Environmental Microbiology 67 (2001) 991-994
35. Palenik B., Ren Q., Dupont C.L., Myers G.S., Heidelberg J.F., Badger J.H., Madupu R., Nelson W.C., Brinkac L.M., Dodson R.J., Durkin A.S., Daugherty S.C., Suillivan S.A., Khouri H., Mohamoud Y., Halpin R., and Paulsen I.T. Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment. Proceedings of the National Academy of Sciences of the United States of America 103 (2006) 13555-13559
36. Partensky F., Hess W.R., and Vaulot D. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiology and Molecular Biology Reviews (1999) 106-127
37. Richardson K., Visser A.W., and Pedersen F.B. Subsurface phytoplankton blooms fuel pelagic production in the North Sea. Journal of Plankton Research 22 (2000) 1663-1671
38. Rocap G., Larimer F.W., Lamerdin J., Malfatti S., Chain P., Ahlgren N.A., Arellano A., Coleman M., Hauser L., Hess W.R., Johnson Z.I., Land M., Lindell D., Post A.F., Regala W., Shah M., Shaw S.L., Steglich C., Sullivan M.B., Ting C.S., Tolonen A., Webb E.A., Zinser E.R., and Chisholm S.W. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424 (2003) 1042-1046
39. Six C., Thomas J.C., Brahamsha B., Lemoine Y., and Partensky F. Photophysiology of the marine cyanobacterium Synechococcus sp. WH8102, a new model organism. Aquatic Microbial Ecology 35 (2004) 17-29
40. Takeoka H., Koizumi Y., and Kaneda A. Year-to-year variation of a kyucho and a bottom intrusion in the Bungo Channel, Japan. In: Yanagi T. (Ed). Interactions Between Estuaries, Coastal Seas and Shelf Seas (2000), Terra Scientific Publishing Company, Tokyo 197-215
41. Toledo G., and Palenik B. Synechococcus diversity in the California Current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains. Applied and Environmental Microbiology 63 (1997) 4298-4303
42. Worden A.Z. Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquatic Microbial Ecology 43 (2006) 165-175