메뉴 건너뛰기




Volumn 73, Issue 22, 2007, Pages 7155-7161

Quantitative distributions of Epsilonproteobactena and a Sulfurimonas subgroup in pelagic redoxclines of the central Baltic Sea

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMISTRY; CLONING; ENZYME ACTIVITY; FLUORESCENCE; MICROBIOLOGY; RNA;

EID: 36649026162     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00466-07     Document Type: Article
Times cited : (56)

References (45)
  • 3
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 5
    • 33144487676 scopus 로고    scopus 로고
    • Identification of a Thiomicrospira denitrificans-like epsilonproteobacterium as a catalyst for autotrophic denitrification in the central Baltic Sea
    • Brettar, I., M. Labrenz, S. Flavier, J. Bötel, H. Kuosa, R. Christen, and M. G. Höfle. 2006. Identification of a Thiomicrospira denitrificans-like epsilonproteobacterium as a catalyst for autotrophic denitrification in the central Baltic Sea. Appl. Environ. Microbiol. 72:1364-1372.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 1364-1372
    • Brettar, I.1    Labrenz, M.2    Flavier, S.3    Bötel, J.4    Kuosa, H.5    Christen, R.6    Höfle, M.G.7
  • 6
    • 0026330304 scopus 로고
    • 2S-oxidation as motor of denitrification at the oxic-anoxic interface
    • 2S-oxidation as motor of denitrification at the oxic-anoxic interface. Mar. Ecol. Prog. Ser. 77:157-169.
    • (1991) Mar. Ecol. Prog. Ser , vol.77 , pp. 157-169
    • Brettar, I.1    Rheinheimer, G.2
  • 7
    • 0036323967 scopus 로고    scopus 로고
    • Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea
    • Bruns, A., H. Cypionka, and J. Overmann. 2002. Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea. Appl. Environ. Microbiol. 68:3978-3987.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3978-3987
    • Bruns, A.1    Cypionka, H.2    Overmann, J.3
  • 8
    • 33646827488 scopus 로고    scopus 로고
    • The versatile ε-proteobacteria: Key players in sulphidic habitats
    • Campbell, B. J., A. S. Engel, M. L. Porter, and K. Takai. 2006. The versatile ε-proteobacteria: key players in sulphidic habitats. Nat. Rev. Microbiol. 4:458-468.
    • (2006) Nat. Rev. Microbiol , vol.4 , pp. 458-468
    • Campbell, B.J.1    Engel, A.S.2    Porter, M.L.3    Takai, K.4
  • 9
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., A. Bruhl, R. Amann, K.-H. Schleifer, and M. Wagner. 1999. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
    • (1999) Syst. Appl. Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 10
  • 12
    • 10644225888 scopus 로고    scopus 로고
    • Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic Epsilonproteobacteria
    • Engel, A. S., M. L. Porter, L. A. Stern, S. Quinlan, and P. C. Bennett. 2004. Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic "Epsilonproteobacteria." FEMS Microbiol. Ecol. 51:31-53.
    • (2004) FEMS Microbiol. Ecol , vol.51 , pp. 31-53
    • Engel, A.S.1    Porter, M.L.2    Stern, L.A.3    Quinlan, S.4    Bennett, P.C.5
  • 13
    • 0031789907 scopus 로고    scopus 로고
    • Row cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • Fuchs, B. M., G. Wallner, W. Beisker, I. Schwippl, W. Ludwig, and R. Amann. 1998. Row cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64:4973-4982.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, I.4    Ludwig, W.5    Amann, R.6
  • 14
    • 0001177098 scopus 로고
    • Dominance of bacterial biomass in the Sargasso Sea and its ecological implications
    • Fuhrman, J. A., T. D. Sleeter, C. A. Carlson, and L. M. Proctor. 1989. Dominance of bacterial biomass in the Sargasso Sea and its ecological implications. Mar. Ecol. Prog. Ser. 57:207-217.
    • (1989) Mar. Ecol. Prog. Ser , vol.57 , pp. 207-217
    • Fuhrman, J.A.1    Sleeter, T.D.2    Carlson, C.A.3    Proctor, L.M.4
  • 15
    • 0003409382 scopus 로고
    • Grasshoff, K, M. Erhardt, and K. Kremling ed, Verlag Chemie, Weinheim, Germany
    • Grasshoff, K., M. Erhardt, and K. Kremling (ed.). 1983. Methods of seawater analysis. Verlag Chemie, Weinheim, Germany.
    • (1983) Methods of seawater analysis
  • 16
    • 0343313024 scopus 로고
    • Sedimentary sulfide mineral formation - an energy circuit system approach
    • Hallberg, R. O. 1972. Sedimentary sulfide mineral formation - an energy circuit system approach. Mineral Deposita 7:189-201.
    • (1972) Mineral Deposita , vol.7 , pp. 189-201
    • Hallberg, R.O.1
  • 18
    • 17844394707 scopus 로고    scopus 로고
    • Retrieval of nearly complete 16S rRNA gene sequences from environmental DNA following 16S rRNA-based community fingerprinting
    • Höfle, M. G., S. Flavier, R. Christen, J. Bötel, M. Labrenz, and I. Brettar. 2005. Retrieval of nearly complete 16S rRNA gene sequences from environmental DNA following 16S rRNA-based community fingerprinting. Environ. Microbiol. 7:670-675.
    • (2005) Environ. Microbiol , vol.7 , pp. 670-675
    • Höfle, M.G.1    Flavier, S.2    Christen, R.3    Bötel, J.4    Labrenz, M.5    Brettar, I.6
  • 19
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 23
    • 9744249395 scopus 로고    scopus 로고
    • Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity
    • Kodama, Y., and K. Watanabe. 2004. Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity. Int. J. Syst. Evol. Microbiol. 54:2297-2300.
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 2297-2300
    • Kodama, Y.1    Watanabe, K.2
  • 24
    • 4143103831 scopus 로고    scopus 로고
    • Development and application of a real-time PCR approach for quantification of uncultured bacteria in the central Baltic Sea
    • Labrenz, M., I. Brettar, R. Christen, S. Flavier, J. Bötel, and M. G. Höfle. 2004. Development and application of a real-time PCR approach for quantification of uncultured bacteria in the central Baltic Sea. Appl. Environ. Microbiol. 70:4971-4979.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4971-4979
    • Labrenz, M.1    Brettar, I.2    Christen, R.3    Flavier, S.4    Bötel, J.5    Höfle, M.G.6
  • 25
    • 33847723418 scopus 로고    scopus 로고
    • Distribution of abundant prokaryotic organisms in the water column of the central Baltic Sea with an oxic-anoxic interface
    • Labrenz, M., G. Jost, and K. Jürgens. 2007. Distribution of abundant prokaryotic organisms in the water column of the central Baltic Sea with an oxic-anoxic interface. Aquat. Microb. Ecol. 46:177-190.
    • (2007) Aquat. Microb. Ecol , vol.46 , pp. 177-190
    • Labrenz, M.1    Jost, G.2    Jürgens, K.3
  • 26
    • 32044468496 scopus 로고    scopus 로고
    • Impact of different in vitro electron donor/acceptor conditions on potential chemolithoautotrophic communities from marine pelagic redoxclines
    • Labrenz, M., G. Jost, C. Pohl, S. Beckmann, W. Martens-Habbena, and K. Jürgens. 2005. Impact of different in vitro electron donor/acceptor conditions on potential chemolithoautotrophic communities from marine pelagic redoxclines. Appl. Environ. Microbiol. 71:6664-6672.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 6664-6672
    • Labrenz, M.1    Jost, G.2    Pohl, C.3    Beckmann, S.4    Martens-Habbena, W.5    Jürgens, K.6
  • 27
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow ed, John Wiley and Sons, Chichester, United Kingdom
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, Chichester, United Kingdom.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-175
    • Lane, D.J.1
  • 28
    • 0141613110 scopus 로고    scopus 로고
    • Dissipation in the Baltic proper during winter stratification
    • doi:10.1029/2002JC001401
    • Lass, H. U., H. Prandke, and B. Liljebladh. 2003. Dissipation in the Baltic proper during winter stratification. J. Geophys. Res. Oceans 108:3187. doi:10.1029/2002JC001401.
    • (2003) J. Geophys. Res. Oceans , vol.108 , pp. 3187
    • Lass, H.U.1    Prandke, H.2    Liljebladh, B.3
  • 29
    • 33646118981 scopus 로고    scopus 로고
    • Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization
    • Un, X., S. G. Wakeham, I. F. Putnam, Y. M. Astor, M. I. Scranton, A. Y. Chistoserdov, and G. T. Taylor. 2006. Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Appl. Environ. Microbiol. 72:2679-2690.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 2679-2690
    • Un, X.1    Wakeham, S.G.2    Putnam, I.F.3    Astor, Y.M.4    Scranton, M.I.5    Chistoserdov, A.Y.6    Taylor, G.T.7
  • 30
    • 2542523843 scopus 로고    scopus 로고
    • Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Förster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. König, T. Liss, R. Lüßmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K.-H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Förster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. König, T. Liss, R. Lüßmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K.-H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
  • 31
    • 0035318078 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin
    • Madrid, V. M., G. T. Taylor, M. I. Scranton, and A. Y. Chistoserdov. 2001. Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin. Appl. Environ. Microbiol. 67:1663-1674.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 1663-1674
    • Madrid, V.M.1    Taylor, G.T.2    Scranton, M.I.3    Chistoserdov, A.Y.4
  • 32
    • 0032796694 scopus 로고    scopus 로고
    • Matthäus, W., and H. Schinke. 1999. The influence of river runoff on deep water conditions of the Baltic Sea. Hydrobiologia 393:1-10.
    • Matthäus, W., and H. Schinke. 1999. The influence of river runoff on deep water conditions of the Baltic Sea. Hydrobiologia 393:1-10.
  • 33
    • 25144503993 scopus 로고    scopus 로고
    • Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field
    • Nakagawa, S., K. Takai, F. Inagaki, H. Hirayama, T. Nunoura, K. Horikoshi, and Y. Sake. 2005. Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field. Environ. Microbiol. 7:1619-1632.
    • (2005) Environ. Microbiol , vol.7 , pp. 1619-1632
    • Nakagawa, S.1    Takai, K.2    Inagaki, F.3    Hirayama, H.4    Nunoura, T.5    Horikoshi, K.6    Sake, Y.7
  • 34
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68:3094-3101.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 35
    • 0029124948 scopus 로고
    • Dominance of one bacterial phylotype at a mid-Atlantic ridge hydrothermal vent site
    • Polz, M. F., and C. M. Cavanaugh. 1995. Dominance of one bacterial phylotype at a mid-Atlantic ridge hydrothermal vent site. Proc. Natl. Acad. Sci. USA 92:7232-7236.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7232-7236
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 36
    • 0033914764 scopus 로고    scopus 로고
    • Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting
    • Schauer, M., R. Massana, and C. Pedrós-Alió. 2000. Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting. FEMS Microbiol. Ecol. 33:51-59.
    • (2000) FEMS Microbiol. Ecol , vol.33 , pp. 51-59
    • Schauer, M.1    Massana, R.2    Pedrós-Alió, C.3
  • 37
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger, F., and C. C. Tebbe. 1998. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64:4870-4876.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 38
    • 0037882329 scopus 로고    scopus 로고
    • An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization
    • Sekar, R., A. Pernthaler, J. Pernthaler, F. Warnecke, T. Posch, and R. Amann. 2003. An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl. Environ. Microbiol. 69:2928-2935.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 2928-2935
    • Sekar, R.1    Pernthaler, A.2    Pernthaler, J.3    Warnecke, F.4    Posch, T.5    Amann, R.6
  • 41
    • 0035138967 scopus 로고    scopus 로고
    • Chemoautotrophy in the redox transition zone of the Cariaco Basin: A significant midwater source of organic carbon production
    • Taylor, G. T., M. Iabichella, T.-Y. Ho, M. I. Scranton, R. C. Thunell, F. Muller-Karger, and R. Varela. 2001. Chemoautotrophy in the redox transition zone of the Cariaco Basin: a significant midwater source of organic carbon production. Limnol. Oceanogr. 46:148-163.
    • (2001) Limnol. Oceanogr , vol.46 , pp. 148-163
    • Taylor, G.T.1    Iabichella, M.2    Ho, T.-Y.3    Scranton, M.I.4    Thunell, R.C.5    Muller-Karger, F.6    Varela, R.7
  • 42
    • 0242489257 scopus 로고    scopus 로고
    • Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea
    • Vetriani, C., H. V. Tran, and L. J. Kerkhof. 2003. Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea. Appl. Environ. Microbiol. 69:6481-6488.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 6481-6488
    • Vetriani, C.1    Tran, H.V.2    Kerkhof, L.J.3
  • 43
    • 0027339723 scopus 로고
    • Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
    • Wallner, G., R. Amann, and W. Beisker. 1993. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14:136-143.
    • (1993) Cytometry , vol.14 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3
  • 44
    • 0001614970 scopus 로고
    • Gram-negative mesophilic sulphate-reducing bacteria
    • T. H. G. Balows, A. M. Dworkin, W. Harder, and K.-H. Schleifer ed, Springer, New York, NY
    • Widdel, F., and F. Bak. 1992. Gram-negative mesophilic sulphate-reducing bacteria, p. 3353-3378. In T. H. G. Balows, A. M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes. Springer, New York, NY.
    • (1992) The prokaryotes , pp. 3353-3378
    • Widdel, F.1    Bak, F.2
  • 45
    • 34250150693 scopus 로고
    • Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov. sp. nov., and Desulfonema magnum sp. nov
    • Widdel, F., G.-W. Kohring, and F. Mayer. 1983. Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov. sp. nov., and Desulfonema magnum sp. nov. Arch. Microbiol. 134:286-294.
    • (1983) Arch. Microbiol , vol.134 , pp. 286-294
    • Widdel, F.1    Kohring, G.-W.2    Mayer, F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.