Phylogenetic studies in the Candelariaceae (lichenized Ascomycota) based on nuclear ITS DNA sequence data

Mycological Research

Volumn 111, Issue 11, 2007, Pages 1277-1284

  Westberg, Martin ^a   Arup, Ulf ^a   Kärnefelt, Ingvar ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

Candelaria; Canelariella; Lecanoromycetes; Lichens; Molecular phylogeny

Indexed keywords

FUNGAL DNA; RIBOSOMAL SPACER DNA;

BAYESIAN ANALYSIS; DNA; GENETIC ANALYSIS; LICHEN; MARKOV CHAIN; MONTE CARLO ANALYSIS; MORPHOLOGY; PARSIMONY ANALYSIS; PHYLOGENETICS; PHYLOGENY;

ARTICLE; ASCOMYCETES; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LICHENS; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

ASCOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; LICHENS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ACAROSPORA CERVINA; ASCOMYCOTA; CANDELARIA; CANDELARIELLA; CANDELARIELLA VITELLINA; CANDELINA; LECANORACEAE; LECANOROMYCETES; PLACOMARONEA; PLEOPSIDIUM CHLOROPHANUM;

EID: 36549075135     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2007.08.007     Document Type: Article

References (32)

1. Andersen H.L., and Ekman S. Phylogeny of the Micareaceae inferred from nrSSU DNA sequences. Lichenologist 36 (2004) 27-35
2. Arup U. A new taxonomy of the Caloplaca citrina group in the Nordic countries, except Iceland. Lichenologist 38 (2006) 1-20
3. Döring H., and Lumbsch H.T. Ascoma ontogeny: is this character set of any use in the systematics of the lichenized ascomycetes?. Lichenologist 30 (1998) 489-500
4. Gardes M., and Bruns T.D. ITS primers with enhanced specificity for basidiomycetes Application for the identification of mycorrhizae and rusts. Molecular Ecology 2 (1993) 113-118
5. Hafellner J. Acarospora und Pleopsidium - zwei licheniserte Ascomycetengattungen (Lecanorales) mit zahlreichen Konvergenzen. Nova Hedwigia 56 (1993) 281-305
6. Hafellner J., Hertel H., Rambold G., and Timdal E. Lecanorales. Discussion 4. In: Hawksworth D.L. (Ed). Ascomycete Systematics: problems and perspectives in the nineties (1994), Plenum Press, New York 379-387
7. Hakulinen R. Die Flechtengattung Candelariella Müll. Arg., mit besonderer Berücksichtigung ihres Auftretens und ihrer Verbreitung in Fennoskandien. Annales Botanici Societatis Zoologicae Botanicae Fennicae 'Vanamo' 27 3 (1954) 1-127
8. Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogentic trees. Bioinformatics 17 (2001) 754-755
9. James P.W., and Gilbert O.L. Candelaria Massal. (1852). In: Purvis O.W., Coppins B.J., Hawksworth D.L., James P.W., and Moore D.M. (Eds). The Lichen Fora of Great Britain and Ireland (1992), Natural History Museum Publications, London 159-162
10. Khodosovtsev A., Kondratyuk S., and Kärnefelt I. Candelariella boikoi, a new lichen species from Eurasia. Graphis Scripta 16 (2004) 11-15
11. Ladd D., Wilhelm G., and Harris R.C. Additions to the lichen flora of Missouri. Evansia 11 (1994) 131-138
12. LaGreca S., and Lumbsch H.T. The phylogenetic position of the Candelariaceae (Lecanorales) inferred from anatomical and molecular data. Bibliotheca Lichenologica 78 (2001) 211-222
13. Lumbsch T. Calycin in Lecanora fulvastra. Lichenologist 26 (1994) 94-96
14. Minin V., Abdo Z., Joyce P., and Sullivan J. Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology 52 (2003) 674-683
15. Nimis P.L., Poelt J., and Puntillo D. Candelariella faginea spec. nov. (Lichenes Candelariaceae) eine bemerkenswerte neue Art einer schwierigen Gattung aus Südeuropa. Nova Hedwigia 49 (1989) 274-280
16. Poelt J. Die lobaten Arten der Flechtengattung Lecanora Ach. sensu ampl. in der Holarktis. Mitteilungen der Botanischen Staatssammlung München 2 (1958) 411-573
17. Poelt J. Zur Kenntnis der Flechtenfamilie Candelariaceae. Ein Beitrag mit besonderer Berücksichtigung einiger südamerikanischer Arten. Phyton [Austria] 16 (1974) 189-210
18. Poelt J., and Reddi B.V. Candelaria und Candelariella. Flechten des Himalaya 4. Khumbu Himal 6 (1969) 1-16
19. Poelt J., and Vězda A. Candelariella plumbea und C. rhodax sp. novae, zwei neue Arten der europäischen Flechten-Flora. Folia Geobotanica et Phytotaxonomica 11 (1976) 87-92
20. Räsänen V. Das System der Flechten. Acta Botanica Fennica 33 (1943) 1-82
21. Rondon Y. Une espece nouvelle de lichen: Candelariella oleaginescens nov. spec. Revue Bryologique et Lichénologique 34 (1966) 831-832
22. Swofford D.L. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10 (2002), Sinauer Associates, Sunderland, MA
23. Thomson J.W. Notes on American arctic species of Candelariella. Revista da Faculdade de Cienas de Lisboa ser. 2a 17 (1975 (1973)) 747-759
24. Thor G., and Wirth V. Candelariella viae-lacteae, a new lichen species from Europe. Stuttgarter Beiträge zur Naturkunde, Serie A 445 (1990) 1-4
25. Vobis G. Bau und Entwicklung der Flechten-Pycnidien und ihrer Conidien. Bibliotheca Lichenologica 14 (1980) 1-141
26. Wedin M., Wiklund E., Crewe A., Döring H., Ekman S., Nyberg A., Schmitt I., and Lumbsch T. Phylogenetic relationships of Lecanoromycetes (Ascomycota) as revealed by analyses of mtSSU and nLSU rDNA secuence data. Mycological Research 109 (2005) 159-172
27. Westberg M. Placomaronea. In: Nash III T.H., Ryan B.D., Diederich P., Gries C., and Bungartz F. (Eds). Lichen Flora of the Greater Sonoran Desert Region Vol. 2 (2004), Lichens Unlimited, Tempe AZ 418-419
28. Westberg M. Candelariella (Candelariaceae) in western United States and northern Mexico: the species with biatorine apothecia. Bryologist 110 (2007) 365-374
29. Westberg M. Candelariella (Candelariaceae) in western United States and northern Mexico: the polysporous species. Bryologist 110 (2007) 375-390
30. Westberg M. Candelariella (Candelariaceae) in western United States and northern Mexico: the 8-spored, lecanorine species. Bryologist 110 (2007) 391-419
31. Westberg M., and Nash III T.H. Candelaria. In: Nash III T.H., Ryan B.D., Gries C., and Bungartz F. (Eds). Lichen Flora of the Greater Sonoran Desert Region 1 (2002), Lichens Unlimited, Tempe AZ 116-118
32. White T.J., Bruns T.D., Lee S., and Taylor J. Amplification and direct sequencing of fungal ribosomal DNA genes for phylogenies. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: a guide to methods and applications (1990), Academic Press, San Diego 315-322