Comparative microbial genome visualization using genomeViz

Methods in Molecular Biology

Volumn 395, Issue , 2007, Pages 97-108

  Ghai, Rohit ^a   Chakraborty, Trinad ^a  

^a NONE

Author keywords

Circular genome plots; Comparative genomics; Genome visualization; Horizontal gene transfer; Whole genome alignments

Indexed keywords

ARTICLE; BACTERIAL GENOME; COMPARATIVE STUDY; GENETIC DATABASE; HORIZONTAL GENE TRANSFER; SEQUENCE ALIGNMENT;

DATABASES, GENETIC; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS);

EID: 36549067195     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-514-8:97     Document Type: Article

References (7)

1. Kerkhoven, R., van Enckevort, F. H., Boekhorst, J., Molenaar, D., and Siezen, R. J. (2004) Visualization for genomics: the Microbial Genome Viewer. Bioinformatics 20, 1812-1814.
2. Sato, N. and Ehira, S. (2003) GenoMap, a circular genome data viewer. Bioinformatics 19, 1583-1584.
3. Leader, D. P. (2004) BugView: a browser for comparing genomes. Bioinformatics 20, 129-130.
4. Gibson, R. and Smith, D. R. (2003) Genome visualization made fast and simple. Bioinformatics 19, 1449-1450.
5. Stothard, P. and Wishart, D. S. (2005) Circular genome visualization and exploration using CGView. Bioinformatics 21, 537-539.
6. Ghai, R., Hain, T., and Chakraborty, T. (2004) GenomeViz: visualizing microbial genomes. BMC Bioinformatics 5, 198.
7. Merkl, R. (2004) SIGI: score-based identification of genomic islands. BMC Bioinformatics 5, 22.