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Volumn 39, Issue 4, 2007, Pages 471-511

Inferring phylogenetic trees using answer set programming

Author keywords

Answer set programming; Cladistics; Phylogeny

Indexed keywords

COMPUTATIONAL METHODS; COMPUTER PROGRAMMING; COMPUTER SOFTWARE; KNOWLEDGE REPRESENTATION;

EID: 36549063782     PISSN: 01687433     EISSN: 15730670     Source Type: Journal    
DOI: 10.1007/s10817-007-9082-1     Document Type: Article
Times cited : (57)

References (42)
  • 1
    • 21744463042 scopus 로고    scopus 로고
    • Neighbour-nets portray the Chinese dialect continuum and the linguistic legacy of China's demic history
    • 1567
    • Ben Hamed, M.: Neighbour-nets portray the Chinese dialect continuum and the linguistic legacy of China's demic history. Proc. R. Soc. Lond., B 272(1567), 1015-1022 (2005)
    • (2005) Proc. R. Soc. Lond., B , vol.272 , pp. 1015-1022
    • Ben Hamed, M.1
  • 2
    • 0344412409 scopus 로고    scopus 로고
    • The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs
    • 1-2
    • Bodlaender, H.L., Fellows, M.R., Hallett, M.T., Wareham, H.T., Warnow, T.J.: The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs. Theor. Comp. Sci. 244(1-2), 167-188 (2000)
    • (2000) Theor. Comp. Sci. , vol.244 , pp. 167-188
    • Bodlaender, H.L.1    Fellows, M.R.2    Hallett, M.T.3    Wareham, H.T.4    Warnow, T.J.5
  • 4
    • 0026541877 scopus 로고
    • Phylogeny and biodiversity: Conserving our evolutionary legacy
    • Brooks, D.R., Mayden, R.L., McLennan, D.A.: Phylogeny and biodiversity: conserving our evolutionary legacy. Trends Ecol. Evol. 7, 55-59 (1992)
    • (1992) Trends Ecol. Evol. , vol.7 , pp. 55-59
    • Brooks, D.R.1    Mayden, R.L.2    McLennan, D.A.3
  • 6
    • 0000116740 scopus 로고
    • A method for deducing branching sequences in phylogeny
    • Camin, J.H., Sokal, R.R.: A method for deducing branching sequences in phylogeny. Evolution 19, 311-326 (1965)
    • (1965) Evolution , vol.19 , pp. 311-326
    • Camin, J.H.1    Sokal, R.R.2
  • 8
    • 0004485904 scopus 로고
    • Computational complexity of inferring phylogenies by compatibility
    • 2
    • Day, W.H.E., Sankoff, D.: Computational complexity of inferring phylogenies by compatibility. Syst. Zool. 35(2), 224-229 (1986)
    • (1986) Syst. Zool. , vol.35 , pp. 224-229
    • Day, W.H.E.1    Sankoff, D.2
  • 9
    • 79953785309 scopus 로고
    • An Indo-European classification: A lexicostatistical experiment
    • Dyen, I., Kruskal, J.B., Black, P.: An Indo-European classification: a lexicostatistical experiment. Trans. Am. Philos. Soc. 82, 1-132 (1992)
    • (1992) Trans. Am. Philos. Soc. , vol.82 , pp. 1-132
    • Dyen, I.1    Kruskal, J.B.2    Black, P.3
  • 13
    • 33746918413 scopus 로고    scopus 로고
    • Temporal phylogenetic networks and logic programming
    • 5
    • Erdem, E., Lifschitz, V., Ringe, D.: Temporal phylogenetic networks and logic programming. Theory Pract. Log. Program. 6(5), 539-558 (2006)
    • (2006) Theory Pract. Log. Program. , vol.6 , pp. 539-558
    • Erdem, E.1    Lifschitz, V.2    Ringe, D.3
  • 15
    • 0000209031 scopus 로고
    • Numerical methods for inferring evolutionary trees
    • Felsenstein, J.: Numerical methods for inferring evolutionary trees. Q. Rev. Biol. 57, 379-404 (1982)
    • (1982) Q. Rev. Biol. , vol.57 , pp. 379-404
    • Felsenstein, J.1
  • 17
  • 19
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • 4
    • Fitch, W.M.: Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20(4), 406-416 (1971)
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 20
    • 0003081588 scopus 로고
    • The Steiner tree problem in phylogeny is NP-complete
    • Foulds, L.R., Graham, R.L.: The Steiner tree problem in phylogeny is NP-complete. Adv. Appl. Math. 3, 43-49 (1982)
    • (1982) Adv. Appl. Math. , vol.3 , pp. 43-49
    • Foulds, L.R.1    Graham, R.L.2
  • 22
    • 77951505493 scopus 로고
    • Classical negation in logic programs and disjunctive databases
    • Gelfond, M., Lifschitz, V.: Classical negation in logic programs and disjunctive databases. New Gener. Comput. 9, 365-385 (1991)
    • (1991) New Gener. Comput. , vol.9 , pp. 365-385
    • Gelfond, M.1    Lifschitz, V.2
  • 24
    • 0001802596 scopus 로고
    • Phylogenetic systematics
    • Hennig, W.: Phylogenetic systematics. Annu. Rev. Entomol. 10, 97-116 (1965)
    • (1965) Annu. Rev. Entomol. , vol.10 , pp. 97-116
    • Hennig, W.1
  • 25
    • 36549037886 scopus 로고
    • Phylogenetic systematics
    • University of Illinois Press (1966) by D.D. Davis and R. Zangerl
    • Hennig, W.: Phylogenetic Systematics. University of Illinois Press (1966) Translated from Grundzuege einer Theorie der phylogenetischen Systematik (1950) by D.D. Davis and R. Zangerl
    • (1950) Grundzuege Einer Theorie der Phylogenetischen Systematik
    • Hennig, W.1
  • 26
    • 0000041071 scopus 로고
    • Evolution and historical biogeography of a parasite-host assemblage: Alcataenia spp. (Cyclophyllidea: Dilepididae) in Alcidae (Chradriiformes)
    • Hoberg, E.P.: Evolution and historical biogeography of a parasite-host assemblage: Alcataenia spp. (Cyclophyllidea: Dilepididae) in Alcidae (Chradriiformes). Can. J. Zool. 64, 2576-2589 (1986)
    • (1986) Can. J. Zool. , vol.64 , pp. 2576-2589
    • Hoberg, E.P.1
  • 27
    • 0026615730 scopus 로고
    • Congruent and synchronic patterns in biogeography and speciation among seabirds, pinnipeds, and cestodes
    • 4
    • Hoberg, E.P.: Congruent and synchronic patterns in biogeography and speciation among seabirds, pinnipeds, and cestodes. J. Parasitol. 78(4), 601-615 (1992)
    • (1992) J. Parasitol. , vol.78 , pp. 601-615
    • Hoberg, E.P.1
  • 28
    • 0344243483 scopus 로고    scopus 로고
    • Answer set programming and plan generation
    • Lifschitz, V.: Answer set programming and plan generation. Artif. Intell. 138, 39-54 (2002)
    • (2002) Artif. Intell. , vol.138 , pp. 39-54
    • Lifschitz, V.1
  • 33
    • 0001775594 scopus 로고    scopus 로고
    • Stable models and an alternative logic programming paradigm
    • Springer Berlin Heidelberg New York
    • Marek, V., Truszczyński, M.: Stable models and an alternative logic programming paradigm. In: The Logic Programming Paradigm: A 25-Year Perspective, pp. 375-398. Springer, Berlin Heidelberg New York (1999)
    • (1999) The Logic Programming Paradigm: A 25-Year Perspective , pp. 375-398
    • Marek, V.1    Truszczyński, M.2
  • 34
    • 84989375635 scopus 로고    scopus 로고
    • On detecting borrowing: Distance-based and character-based approaches
    • 2
    • Minett, J.W., Wang, W.S.-Y.: On detecting borrowing: distance-based and character-based approaches. Diachronica 20(2), 289-330 (2003)
    • (2003) Diachronica , vol.20 , pp. 289-330
    • Minett, J.W.1    Wang, W.S.-Y.2
  • 36
    • 33645396762 scopus 로고    scopus 로고
    • Perfect phylogenetic networks: A new methodology for reconstructing the evolutionary history of natural languages
    • 2
    • Nakhleh, L., Ringe, D., Warnow, T.: Perfect phylogenetic networks: a new methodology for reconstructing the evolutionary history of natural languages. Language 81(2), 382-420 (2005)
    • (2005) Language , vol.81 , pp. 382-420
    • Nakhleh, L.1    Ringe, D.2    Warnow, T.3
  • 37
    • 0038048901 scopus 로고    scopus 로고
    • Cladistic analysis of languages: Indo-European classification based on lexicostatistical data
    • Rexova, K., Frynta, D., Zrzavý, J.: Cladistic analysis of languages: Indo-European classification based on lexicostatistical data. Cladistics 19, 120-127 (2003)
    • (2003) Cladistics , vol.19 , pp. 120-127
    • Rexova, K.1    Frynta, D.2    Zrzavý, J.3
  • 38
    • 0038503884 scopus 로고    scopus 로고
    • Indo-European and computational cladistics
    • 1
    • Ringe, D., Warnow, T., Taylor, A.: Indo-European and computational cladistics. Trans. Philol. Soc. 100(1), 59-129 (2002)
    • (2002) Trans. Philol. Soc. , vol.100 , pp. 59-129
    • Ringe, D.1    Warnow, T.2    Taylor, A.3
  • 39
    • 0025103688 scopus 로고
    • Thermoluminescence dating of a 50,000-year-old human occupation site in Northern Australia
    • Roberts, R.G., Jones, R.M., Smith, M.A.: Thermoluminescence dating of a 50,000-year-old human occupation site in Northern Australia. Science 345, 153-156 (1990)
    • (1990) Science , vol.345 , pp. 153-156
    • Roberts, R.G.1    Jones, R.M.2    Smith, M.A.3
  • 40
    • 0010122418 scopus 로고    scopus 로고
    • Extending and implementing the stable model semantics
    • Simons, P., Niemelä, I., Soininen, T.: Extending and implementing the stable model semantics. Artif. Intell. 138, 181-234 (2002)
    • (2002) Artif. Intell. , vol.138 , pp. 181-234
    • Simons, P.1    Niemelä, I.2    Soininen, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.