Molecular systematics support the revival of Mycobacterium salmoniphilum (ex Ross 1960) sp. nov., nom. rev., a species closely related to Mycobacterium chelonae

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 11, 2007, Pages 2525-2531

  Whipps, Christopher M ^a   Butler, W Ray ^b   Pourahmad, Fazel ^c,d   Watral, Virginia G ^a   Kent, Michael L ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^c UNIVERSITY OF STIRLING   (United Kingdom)

^d ILAM UNIVERSITY   (Iran)

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 65; MYCOLIC ACID; RIBOSOME RNA; RNA POLYMERASE BETA SUBUNIT;

AQUACULTURE; ARTICLE; BACTERIAL CELL WALL; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; FISH DISEASE; MORTALITY; MYCOBACTERIOSIS; MYCOBACTERIUM; MYCOBACTERIUM CHELONEI; MYCOBACTERIUM FORTUITUM; MYCOBACTERIUM MARINUM; MYCOBACTERIUM SALMONIPHILUM; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SALMON; SALMONID; TAXONOMY; VALIDITY;

ANIMALS; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; CHAPERONINS; DNA, BACTERIAL; DNA, RIBOSOMAL; FISH DISEASES; GENES, RRNA; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; MYCOBACTERIUM CHELONAE; MYCOBACTERIUM INFECTIONS; MYCOLIC ACIDS; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SALMON; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM CHELONAE; MYCOBACTERIUM FORTUITUM; MYCOBACTERIUM MARINUM; PISCES; SALMONIDAE;

EID: 36549062948     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64841-0     Document Type: Article

References (38)

1. Adékambi, T. & Drancourt, M. (2004). Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int J Syst Evol Microbiol 54, 2095-2105.
2. Adékambi, T., Colson, P. & Drancourt, M. (2003). rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria. J Clin Microbiol 41, 5699-5708.
3. Adékambi, T., Reynaud-Gaubert, M., Greub, G., Gevaudan, M. J., La Scola, B., Raoult, D. & Drancourt, M. (2004). Arnoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia. J Clin Microbiol 42, 5493-5501.
4. Adékambi, T., Berger, P., Raoult, D. & Drancourt, M. (2006). rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol 56, 133-143.
5. Arakawa, C. K & Fryer, J. L. (1984). Isolation and characterization of a new subspecies of Mycobacterium chelonei infectious for salmonid fish. Helgolander Meeresunters 37, 329-342.
6. Arakawa, C. K., Fryer, J. L. & Sanders, J. E. (1986). Serology of Mycobacterium chelonei isolated from salmonid fish. J Fish Dis 9, 269-271.
7. Ashburner, L. D. (1977). Mycobacteriosis in hatchery-confined chinook salmon (Oncorhynchus tshawytscua Walbaum) in Australia. J Fish Biol 10, 523-528.
8. Aubry, A., Chosidow, O., Causmes, E., Jermoe, R. & Cambau, E. (2002). Sixty-three cases of Mycobacterium marinum infection. Arch Intern Med 162, 1746-1752.
9. Belas, R., Faloon, P. & Hannaford, A. (1995). Potential applications of molecular biology to the study of fish mycobacteriosis. Annu Rev Fish Dis 5, 133-173.
10. Brocklebank, J., Raverty, S. & Robinson, J. (2003). Mycobacteriosis in Atlantic salmon farmed in British Columbia. Can Vet J 44, 486-489.
11. Brown-Elliott, B. A. & Wallace, R. J., Jr (2002). Clinical and taxonomic status of pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria. Clin Microbiol Rev 15, 716-746.
12. Bruno, D. W., Griffiths, J., Mitchell, C. G., Wood, B. P., Fletcher, Z. J. Drobniewski, F. A. & Hastings, T. S. (1998). Pathology attributed to Mycobacterium chelonae infection among farmed and laboratory-infected Atlantic salmon Salmo salar. Dis Aquat Organ 33, 101-109.
13. Butler, W. R. & Guthertz, L. S. (2001). Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species. Clin Microbiol Rev 14, 704-726.
14. Butler, W. R. & Kilburn, J. O. (1990). High-performance liquid chromatography patterns of mycolic acids as criteria for identification of Mycobacterium chelonae, Mycobacterium fortuitum , and Mycobacterium smegmatis. J Clin Microbiol 28, 2094-2098.
15. Decostere, A., Hermans, K. & Haesebrouck, F. (2004). Piscine mycobacteriosis: a literature review covering the agent and the disease it causes in fish and humans. Vet Microbiol 99, 159-166.
16. Devulder, G., Perouse de Montclos, M. & Flandrois, J. P. (2005). A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model. Int J Syst Evol Microbiol 55, 293-302.
17. Gordon, R. E & Mihm, J. M. (1959). A comparison of four species of mycobacteria. J Gen Microbiol 21, 736-748.
18. Heckert, R. A., Elankumaran, S., Milani, A. & Baya, A. (2001). Detection of a new Mycobacterium species in wild striped bass in the Chesapeake Bay. J Clin Microbiol 39, 710-715.
19. Jernigan, J. A. & Farr, B. M. (2000). Incubation period and sources of exposure for cutaneous Mycobacterium marinum infection: case report and review of the literature. Clin Infect Dis 31, 439-443.
20. Kent, P. T. & Kubica, G. P. (1985). Public Health Mycobacteriology: a Guide for the Level III Laboratory. Atlanta, GA: US Dept of Public Health & Human Services, Centers for Disease Control.
21. Kent, M. L., Whipps, C. M., Matthews, J. L., Florio, D., Watral, V., Bishop-Stewart, J. K., Poort M. & Bermudez, L. (2004). Mycobacteriosis in zebrafish (Danio rerio) research facilities. Comp Biochem Physiol C Toxicol Pharmacol 138, 383-390.
22. Lapage, S. P., Sneath, P. H. A., Lessel, E. F, Skerman, V. B. D., Seeliger, H. P. R. & Clark W. A. (editors) (1992). International Code of Nomenclature of Bacteria (1990 Re-vision). Bacteriological Code. Washington, DC: American Society for Microbiology.
23. Levi, M. H., Bartell, J., Gandolfo, L., Smole, S. C., Costa, S. F., Weiss, L. M., Johnson, L. K., Osterhout, G. & Herbst L H. (2003). Characterization of Mycobacterium monteflorense sp. nov., a novel pathogenic Mycobacterium from moray eels that is related to Mycobacterium triplex. J Clin Microbiol 41, 2147-2152.
24. Penso, G., Castelnuova, G. & Morellini, M. (1962). Revisione della specie Mycobacterium minetti (Penso et al., 1951). Ann Ist Carlo Forlanini 22, 145-188 in Italian
25. Poort, M. J., Whipps, C. M., Watral, V. G., Font, W. F. & Kent, M. L. (2006). Description of a Mycobacterium species in non-native poeciliids in Hawaii using DNA sequences. J Fish Dis 29, 181-185.
26. Rhodes, M. W., Kator, H., Kotob, S., van Berkum, P., Kaattari, I., Vogelbein, W., Quinn, F., Floyd, M. M., Butler, W. R. & Ottinger, C. A. (2003). Mycobacterium shottsii sp. nov., a slowly growing species isolated from Chesapeake Bay striped bass (Morone saxatilis). Int J Syst Evol Microbiol 53, 421-424.
27. Rhodes, M. W., Kator, H., McNabb, A., Deshayes, C., Reyrat, J. M., Brown-Elliott B. A., Wallace, R., Jr, Trott, K. A., Parker, J. M. & other authors (2005). Mycobacterium pseudoshottsii sp. nov., a slowly growing chromogenic species isolated from Chesapeake Bay striped bass (Morone saxatilis). Int J Syst Evol Microbiol 55, 1139-1147.
28. Roberts, R. J. (2001). The bacteriology of teleosts. In Fish Pathology, 3rd edn, pp. 297-331. Edited by R. J Roberts. Toronto: W. B. Saunders.
29. Ronquist F. & Huelsenbeck J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
30. Ross, A. J. (1960). Mycobacterium salmomphilum sp. nov. from salmonid fishes. Am Rev Respir Dis 81, 241-250.
31. Ross, A. J. (1970). Mycobacteriosis among salmonid fishes. In A Symposium on Diseases of Fishes and Shellfishes, Special Publication No. 5. Edited by S. F. Snieszko. Washington, DC: American Fisheries Society.
32. Schinsky, M. F., Morey, R. E., Steigerwalt, A. G., Douglas, M. P., Wilson, R. W., Floyd, M. M., Butler, W. R., Daneshvar, M. I., Brown-Elliott, B. A. & other authors (2004). Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates. Int J Syst Evol Microbiol 54, 1653-1667.
33. Selvaraju, S. B., Khan, I. U. & Yadav, J. S. (2005). A new method for species identification and differentiation of Mycobacterium chelonae complex based on amplified hsp65 restriction analysis (AHSPRA). Mol Cell Probes 19, 93-99.
34. Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. (editors) (1980). Approved lists of bacterial names. Int J Syst Bacteriol 30 , 255-420.
35. Swofford, D. L. (1998). PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4. Sunderland, MA: Sinauer Associates.
36. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
37. Tsukamura, M., Tsukamura, S. & Mizuno, S. (1967). Numerical taxonomy of Mycobacterium fortuitum. Jpn J Microbiol 11, 243-252.
38. Whipps, C. M., Watral, V. G. & Kent M. L. (2003). Characterization of a Mycobacterium sp. in rockfish, Sebastes alutus (Gilbert) and Sebastes reedi (Westrheim & Tsuyuki), using rDNA sequences. J Fish Dis 26, 241-245.