메뉴 건너뛰기




Volumn 395, Issue , 2007, Pages 177-186

PSI-BLAST tutorial

(2)  Bhagwat, Medha a   Aravind, L a  

a NONE

Author keywords

BLAST; Distant sequence similarity; Profile; PSI BLAST; PSSM; Structural relationships

Indexed keywords

DNA DIRECTED DNA POLYMERASE GAMMA;

EID: 36549012653     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-514-8:177     Document Type: Article
Times cited : (62)

References (15)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F., Madden, T. L., Schärfer, A. A., et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schärfer, A.A.3
  • 2
    • 0033574503 scopus 로고    scopus 로고
    • Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
    • Aravind, L. and Koonin, E. V. (1999) Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J. Mol. Biol. 287, 1023-1040.
    • (1999) J. Mol. Biol , vol.287 , pp. 1023-1040
    • Aravind, L.1    Koonin, E.V.2
  • 3
    • 0028501914 scopus 로고
    • Non-globular domains in protein sequences: Automated segmentation using complexity measures
    • Wootton, J. C. (1994) Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput Chem. 18, 269-285.
    • (1994) Comput Chem , vol.18 , pp. 269-285
    • Wootton, J.C.1
  • 4
    • 0003890119 scopus 로고
    • Kornberg, A. and Baker, T. A, ed, W. H. Freeman, New York, NY
    • Kornberg, A. and Baker, T. A. (ed.) (1991) DNA Replication. W. H. Freeman, New York, NY.
    • (1991) DNA Replication
  • 5
    • 0026717535 scopus 로고
    • Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
    • Kong, X. P., Onrust, R., O'Donnell, M., and Kuriyan, J. (1992) Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 69, 425-437.
    • (1992) Cell , vol.69 , pp. 425-437
    • Kong, X.P.1    Onrust, R.2    O'Donnell, M.3    Kuriyan, J.4
  • 6
    • 0030592544 scopus 로고    scopus 로고
    • Structure of the C-terminal region of p21 (WAFl/CIP1) complexed with human PCNA
    • Gulbis, J. M., Kelman, Z., Hurwitz, J., O'Donnell, M., and Kuriyan, J. (1996) Structure of the C-terminal region of p21 (WAFl/CIP1) complexed with human PCNA. Cell 87, 297-306.
    • (1996) Cell , vol.87 , pp. 297-306
    • Gulbis, J.M.1    Kelman, Z.2    Hurwitz, J.3    O'Donnell, M.4    Kuriyan, J.5
  • 7
    • 0034628915 scopus 로고    scopus 로고
    • Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage
    • Moarefi, I., Jeruzalmi, D., Turner, J., O'Donnell, M., and Kuriyan, J. (2000) Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage. J. Mol. Biol. 296, 1215-1223.
    • (2000) J. Mol. Biol , vol.296 , pp. 1215-1223
    • Moarefi, I.1    Jeruzalmi, D.2    Turner, J.3    O'Donnell, M.4    Kuriyan, J.5
  • 10
    • 0030954208 scopus 로고    scopus 로고
    • GCN5-related histone N-acetyltransferases belong to a diverse superfamily that include the yeast SPT10 protein
    • Neuwald, A. F. and Landsman, D. (1997) GCN5-related histone N-acetyltransferases belong to a diverse superfamily that include the yeast SPT10 protein Trends Biochem. Sci. 22, 154-155.
    • (1997) Trends Biochem. Sci , vol.22 , pp. 154-155
    • Neuwald, A.F.1    Landsman, D.2
  • 11
    • 0032555691 scopus 로고    scopus 로고
    • Crystal structure of a GCN5-related N-acetyltranferase: Serratia marcescens aminoglycoside S-N-acetyltransefrase
    • Wolf, E., Vassilev, A., Makino, Y., Sali, A., Nakatani, Y., and Burley, S. (1998) Crystal structure of a GCN5-related N-acetyltranferase: Serratia marcescens aminoglycoside S-N-acetyltransefrase. Cell 94, 439-449.
    • (1998) Cell , vol.94 , pp. 439-449
    • Wolf, E.1    Vassilev, A.2    Makino, Y.3    Sali, A.4    Nakatani, Y.5    Burley, S.6
  • 12
    • 0033168714 scopus 로고    scopus 로고
    • Crystal structure of the histone acetyltransferase domain of the human PCAF transcriptional regulator bound to coenzyme A
    • Clements, A., Rojas, J.R., Trievel, R.C., Wang, L., Berger, S.L., and Marmorstein, R. (1999) Crystal structure of the histone acetyltransferase domain of the human PCAF transcriptional regulator bound to coenzyme A. The EMBO Journal 18,3521-3532.
    • (1999) The EMBO Journal , vol.18 , pp. 3521-3532
    • Clements, A.1    Rojas, J.R.2    Trievel, R.C.3    Wang, L.4    Berger, S.L.5    Marmorstein, R.6
  • 13
    • 0035878724 scopus 로고    scopus 로고
    • Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
    • Schärfer, A. A., Aravind, L., Madden, T. L., et al. (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res. 29, 2994-3005.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2994-3005
    • Schärfer, A.A.1    Aravind, L.2    Madden, T.L.3
  • 14
    • 79952059298 scopus 로고    scopus 로고
    • Entrez gene: A directory of genes
    • McEntyre, J. and Ostell, J, eds, National Library of Medicine US, NCBI, Bethesda, MD
    • Maglott, D., Pruitt, K., and Tatusova, T. (2005) Entrez gene: a directory of genes, in The NCBI Handbook, (McEntyre, J. and Ostell, J., eds.), National Library of Medicine (US), NCBI, Bethesda, MD.
    • (2005) The NCBI Handbook
    • Maglott, D.1    Pruitt, K.2    Tatusova, T.3
  • 15
    • 84865689685 scopus 로고    scopus 로고
    • The Reference Sequence (RefSeq) Project
    • McEntyre, J. and Ostell, J, eds, National Library of Medicine US, NCBI, Bethesda, MD, Chapter 18
    • Pruitt, K. D., Tatusova, T., and Ostell, J. M. (2005) The Reference Sequence (RefSeq) Project, in The NCBI Handbook, (McEntyre, J. and Ostell, J., eds.), National Library of Medicine (US), NCBI, Bethesda, MD, Chapter 18.
    • (2005) The NCBI Handbook
    • Pruitt, K.D.1    Tatusova, T.2    Ostell, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.