Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor

Proteomics

Volumn 7, Issue 22, 2007, Pages 4148-4157

  Ahrendt, Angela J ^a   Tollaksen, Sandra L ^a   Lindberg, Carl ^a   Zhu, Wenhong ^b   Yates III, John R ^b   Nevin, Kelly P ^c   Babnigg, György ^a   Lovley, Derek R ^c   Giometti, Carol S ^a  

^a ARGONNE NATIONAL LABORATORY   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

Bioremediation; Geobacter protein; Metal reducing; Tandem mass spectra

Indexed keywords

FERRIC CITRATE FE 59; NITRATE; PYRUVIC ACID; TRICARBOXYLIC ACID;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BIOREMEDIATION; ELECTRON; GEOBACTER; GEOBACTER METALLIREDUCENS; NONHUMAN; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; STEADY STATE; TANDEM MASS SPECTROMETRY;

BACTERIAL PROTEINS; CELL PROLIFERATION; ELECTRONS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FERRIC COMPOUNDS; GEOBACTER; HYDROGEN-ION CONCENTRATION; NITRATES; OXIDATION-REDUCTION; PROTEOMICS; TANDEM MASS SPECTROMETRY;

GEOBACTER; GEOBACTER METALLIREDUCENS; GEOBACTER SP.; GEOBACTER SULFURREDUCENS;

EID: 36549003122     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200600955     Document Type: Article

References (41)

1. Stein, L. Y., La Duc, M. T., Grundl, T. J., Nealson, K. H., Environ. Microbiol. 2001, 3, 10-18.
2. Anderson, R. T., Rooney-Varga, J., Gaw, C. V., Lovley, D. R., Environ. Sci. Technol. 1998, 32, 1222-1229.
3. Rooney-Varga, J. N., Anderson, R. T., Fraga, J. L., Ringelberg, D., Lovley, D. R., Appl. Environ. Microbiol. 1999, 65, 3056-3063.
4. Snoeyenbos-West, O. L., Nevin, K. P., Anderson, R. T., Lovley, D. R., Microb. Ecol. 2000, 39, 153-167.
5. Roling, W. F., van Breukelen, B. M., Braster, M., Lin, B., van Verseveld, H. W., Appl. Environ. Microbiol. 2001, 67, 4619-4629.
6. Anderson, R. T., Vrionis, H. A., Ortiz-Bernad, I., Resch, C. T., et al., Appl. Environ. Microbiol., 2003, 69, 5884-5891.
7. Holmes, D. E., Finneran, K. T., O'Neil, R. A., Lovley, D. R., Appl. Environ. Microbiol. 2002, 68, 2300-2306.
8. Lovley, D. R., Phillips, E. J., Appl. Environ. Microbiol. 1988, 54, 1472-1480.
9. Caccavo, F., Jr., Lonergan, D. J., Lovley, D. R., Davis, M., et al., Appl. Environ. Microbiol. 1994, 60, 3752-3759.
10. Lovley, D. R., Holmes, D. E., Nevin, K. P., Adv. Microb. Physiol. 2004, 49, 219-286.
11. Methe, B. A., Webster, J., Nevin, K., Butler, J., Lovley, D. R., Appl. Environ. Microbiol. 2005, 71, 2530-2538.
12. Khare, T., Esteve-Nunez, A., Nevin, K. P., Zhu, W., et al., Proteomics 2006, 6, 632-640.
13. Methe, B. A., Nelson, K. E., Eisen, J. A., Paulsen, I. T., et al., Science 2003, 302, 1967-1969.
14. Lovley, D. R., Giovannoni, S. J., White, D. C., Champine, J. E., et al., Arch. Microbiol. 1993, 159, 336-344.
15. Butler, J. E., Glaven, R. H., Esteve-Nunez, A., Nunez, C., et al., J. Bacteriol. 2006, 188, 450-455.
16. Taylor, B. L., Zhulin, I. B., Microbiol. Mol. Biol. Rev. 1999, 63, 479-506.
17. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R., Wolfe, R. S., Microbiol. Rev. 1979, 43, 260-296.
18. Nottingham, P. M., Hungate, R. E., J. Bacteriol. 1969, 98, 1170-1172.
19. Ramagli, L. S., Rodriquez, L. V., Electrophoresis 1985, 6, 559-563.
20. Anderson, N. G., Anderson, N. L., Anal. Biochem. 1978, 85, 331-340.
21. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
22. Anderson, N. L., Anderson, N. G., Anal. Biochem. 1978, 85, 341-354.
23. Giometti, C. S., Gemmell, M. A., Tollaksen, S. L., Taylor, J., Electrophoresis 1991, 12, 536-543.
24. Anderson, L., Anderson, N. G., Proc. Natl. Acad. Sci. USA 1977, 74, 5421-5425.
25. Giometti, C. S., Taylor, J., Advances in Electrophoresis, Walter de Gruyter and Co., New York, 1991, p. 30.
26. Eng, J. K., McCormack, A. L., Yates, J. R., III, J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
27. Sadygov, R. G., Eng, J., Durr, E., Saraf, A., et al., J. Proteome Res., 2002, 1, 211-215.
28. Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Electrophoresis 1999, 20, 3551-3567.
29. Babnigg, G., Giometti, C. S., Proteomics 2006, 6, 4514-4522.
30. Garnak, M., Reeves, H. C., Science 1979, 203, 1111-1112.
31. Pieulle, L., Guigliarelli, B., Asso, M., Dole, F., et al., Biochim. Biophys. Acta 1995, 1250, 49-59.
32. Macedo, S., Aragao, D., Mitchell, E. P., Lindley, P., Acta Crystallogr. D Biol. Crystallogr. 2003, 59, 2065-2071.
33. Mahadevan, R., Bond, D. R., Butler, J. E., Esteve-Nunez, A., et al., Appl. Environ. Microbiol. 2006, 72, 1558-1568.
34. Thauer, R. K., Eur. J. Biochem. 1988, 176, 497-508.
35. Champine, J. E., Goodwin, S., J. Bacteriol. 1991, 173, 2704-2706.
36. Beliaev, A. S., Thompson, D. K., Khare, T., Lim, H., et al., OMICS 2002, 6, 39-60.
37. van den Berg, W. A., Hagen, W. R., van Dongen, W. M., Eur. J. Biochem. 2000, 267, 666-676.
38. Papinutto, E., Windle, H. J., Cendron, L., Battistutta, R., et al., Biochim. Biophys. Acta 2005, 1753, 240-246.
39. Argyrou, A., Blanchard, J. S., Prog. Nucleic Acid Res. Mol. Biol. 2004, 78, 89-142.
40. Echave, P., Tamarit, J., Cabiscol, E., Ros, J., J. Biol. Chem. 2003, 278, 30193-30198.
41. Nambu, J. R., Lewis, J. O., Wharton, K. A., Jr., Crews, S. T., Cell 1991, 67, 1157-1167.