BioOpera: Cluster-aware computing

Proceedings - IEEE International Conference on Cluster Computing, ICCC

Volumn 2002-January, Issue , 2002, Pages 99-106

  Bausch, W ^a   Pautasso, C ^a   Schaeppi, R ^a   Alonso, G ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Computer architecture; Computer interfaces; Computer science; Concurrent computing; Data analysis; Grid computing; Libraries; Monitoring; Problem solving; Runtime

Indexed keywords

COMPUTER ARCHITECTURE; COMPUTER SCIENCE; DATA REDUCTION; FAULT TOLERANCE; GRID COMPUTING; INTERFACES (COMPUTER); LIBRARIES; MONITORING; PROBLEM SOLVING;

CONCURRENT COMPUTING; PROCESS SUPPORT; RUNTIMES;

CLUSTER COMPUTING;

EID: 36448989582     PISSN: 15525244     EISSN: None     Source Type: Journal    
DOI: 10.1109/CLUSTR.2002.1137734     Document Type: Article

References (22)

1. D. Abramson, R. Sosic, J. Giddy, and B. Hall. Nimrod: A tool for performing parametrised simulations using distributed workstations. In Proc. 4th IEEE Symposium on High Performance Distributed Computing, pages 112-121, Washington DC, USA, 1995.
2. A. A. Alizadeh, M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Hudson, J., L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, L. M. Staudt, and et al. Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling. Nature, 403(6769):503-11., 2000.
3. G. Alonso, W. Bausch, C. Pautasso, M. Hallett, and A. Kahn. Dependable Computing in Virtual Laboratories. In Proc. of the 17th International Conference on Data Engineering (ICDE2001), pages 235-242, Heidelberg, Germany, 2001.
4. G. Alonso and C. Hagen. Geo-Opera: Workflow Concepts for Spatial Processes. In Proc. 5th Intl. Symposium on Spatial Databases (SSD'97), pages 238-258, Berlin, Germany, 1997.
5. D. Baker, D. Georgakopoulos, H. Schuster, A. R. Cassandra, and A. Cichocki. Providing customized process and situation awareness in the collaboration management infrastructure. CoopIS, pages 79-91, 1999.
6. P. G. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, and R. Stevens. TAMBIS: Transparent access to multiple bioinformatics information sources. In J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen, editors, 6th Int. Conf. on Intelligent Systems for Molecular Biology, pages 25-34, Montreal, Canada, 1998. AAAI Press, Menlo Park.
7. BioOpera. Process support for bioinformatics. www.inf.ethz.ch/department/IS/iks/project-home-pages/bio-opera/.
8. G. Cannarozzi, M. Hallett, J. Norberg, and X. Zhou. A cross-comparison of a large gene dataset. Bioinformatics, 16:654-655, 2000.
9. Entigen. BioNavigator. http://www.bionavigator.com.
10. T. Fokert, H.-P. Kersken, A. Schreiber, M. Striezel, and K. Wolf. The distributed engineering framework TENT. In J. M. L. M. Palma, J. Dongarra, and V. Hernández, editors, Vector and Parallel Processing - VECPAR 2000, 4th International Conference, Porto, Portugal, June 21-23, 2000, Selected Papers and Invited Talks, volume 1981 of Lecture Notes in Computer Science, pages 38-46. Springer, 2001.
11. K. Hawick, H. James, C. Patten, and F. Vaughan. Discworld: A distributed high performance computing environment. In P. Sloot, M. Bubak, and B. Hertzberger, editors, Proc. of High Performance Computing and Networks (HPCN), Amsterdam, 1998, volume 1401 of Lecture Notes in Computer Science, pages 598-606. Springer, 1998.
12. S. Herb and J. Ponpeii. Linux cluster in life sciences demonstration. LinuxWorld Conference and Expo, New York, USA, 2001. Also available as IBM White Paper: www4.ibm.com/solutions/lifesciences/pdf/LifeSciencesLinuxCluster.pdf.
13. T. Ideker, V. Thorsson, A. F. Siegel, and L. E. Hood. Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data. Journal of Computational Biology, 7(6):805-17., 2000.
14. Institute for Systems Biology. The analysis pipeline at the Instiute for Systems Biology. http://www.systemsbiology.org/ArrayProcess/index.html.
15. B. Momijian. PostgreSQL: Introduction and Concepts. Addison Wesley, 2000. http://www.postgresql.org.
16. NASA. Image 2000. http://icc.gsfc.nasa.gov/image2000/.
17. ORACLE Corp. ORACLE 8i. http://www.oracle.com.
18. Stanford University. Stanford Microarray Database. http://genome-www5.stanford.edu/MicroArray/SMD/.
19. R. Stevens, C. Baker, P. Baker, and A. Brass. A classification of tasks in bioinformatics. Bioinformatics, 17(2):180-188, 2001.
20. W3C. Simple Object Access Protocol (SOAP) 1.1, 2000. http://www.w3.org/TR/SOAP.
21. M. Weske, G. Vossen, and C. Medeiros. Scientific workflow management: WASA architecture and applications. Technical Report 03/96-I, Universitat Munster, 1996. http://dbms.uni-muenster.de/staff/weske/papers/fb03-96.ps.gz.
22. G. Wiederhold, P. Wegner, and S. Ceri. Towards megaprogramming: A paradigm for component-based programming. Comm. ACM, 35(11):89-99, 1992.