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Volumn 37, Issue 6, 2007, Pages 523-536

A model for the origin of protein synthesis as coreplicational scanning of nascent RNA

Author keywords

Nascent RNA scanning; Origin of protein synthesis; Random peptide byproducts; Riboreplisome ribosome; Segregation of copy and template strands

Indexed keywords

RNA; TRANSFER RNA;

EID: 36448988935     PISSN: 01696149     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11084-007-9108-z     Document Type: Review
Times cited : (6)

References (46)
  • 1
    • 0026079787 scopus 로고
    • Coliphage Q beta RNA replication: RNA catalytic for single-strand release
    • Axelrod VD, Brown E, Priano C, Mills DR (1991) Coliphage Q beta RNA replication: RNA catalytic for single-strand release. Virology 184:595-608
    • (1991) Virology , vol.184 , pp. 595-608
    • Axelrod, V.D.1    Brown, E.2    Priano, C.3    Mills, D.R.4
  • 2
    • 0037428153 scopus 로고    scopus 로고
    • Entrapping ribosomes for viral translation: TRNA mimicry as a molecular Trojan horse
    • Barends S, Bink HH, van den Worm SH, Pleij CW, Kraal B (2003) Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse. Cell 112:123-129
    • (2003) Cell , vol.112 , pp. 123-129
    • Barends, S.1    Bink, H.H.2    Van Den Worm, S.H.3    Pleij, C.W.4    Kraal, B.5
  • 3
    • 0018370008 scopus 로고
    • RNA replication: Function and structure of Qbeta-replicase
    • Blumenthal T, Carmichael GG (1979) RNA replication: function and structure of Qbeta-replicase. Annu Rev Biochem 48:525-548
    • (1979) Annu Rev Biochem , vol.48 , pp. 525-548
    • Blumenthal, T.1    Carmichael, G.G.2
  • 4
    • 0035499046 scopus 로고    scopus 로고
    • TRNAs in the spotlight during protein biosynthesis
    • Brosius J (2001) tRNAs in the spotlight during protein biosynthesis. Trends Biochem Sci 26:653-656
    • (2001) Trends Biochem Sci , vol.26 , pp. 653-656
    • Brosius, J.1
  • 5
    • 27144527101 scopus 로고    scopus 로고
    • Protein activation of a ribozyme: The role of bacterial RNase P protein
    • Buck AH, Dalby AB, Poole AW, Kazantsev AV, Pace NR (2005) Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J 24:3360-3368
    • (2005) EMBO J , vol.24 , pp. 3360-3368
    • Buck, A.H.1    Dalby, A.B.2    Poole, A.W.3    Kazantsev, A.V.4    Pace, N.R.5
  • 6
    • 9644273984 scopus 로고    scopus 로고
    • P-site pairing subtleties revealed by the effects of different tRNAs on programmed translational bypassing where anticodon re-pairing to mRNA is separated from dissociation
    • Bucklin DJ, Wills NM, Gesteland RF, Atkins JF (2005) P-site pairing subtleties revealed by the effects of different tRNAs on programmed translational bypassing where anticodon re-pairing to mRNA is separated from dissociation. J Mol Biol 345:39-49
    • (2005) J Mol Biol , vol.345 , pp. 39-49
    • Bucklin, D.J.1    Wills, N.M.2    Gesteland, R.F.3    Atkins, J.F.4
  • 7
    • 0026065192 scopus 로고
    • An RNA replisome as the ancestor of the ribosome
    • Campbell JH (1991) An RNA replisome as the ancestor of the ribosome. J Mol Evol 32:3-5
    • (1991) J Mol Evol , vol.32 , pp. 3-5
    • Campbell, J.H.1
  • 8
    • 25644455262 scopus 로고    scopus 로고
    • Fidelity in protein synthesis
    • Cochella L, Green R (2005) Fidelity in protein synthesis. Curr Biol 15:R536-R540
    • (2005) Curr Biol , vol.15
    • Cochella, L.1    Green, R.2
  • 9
    • 0042173407 scopus 로고    scopus 로고
    • Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex
    • Cukras AR, Southworth DR, Brunelle JL, Culver GM, Green R (2003) Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex. Mol Cell 12:321-328
    • (2003) Mol Cell , vol.12 , pp. 321-328
    • Cukras, A.R.1    Southworth, D.R.2    Brunelle, J.L.3    Culver, G.M.4    Green, R.5
  • 10
    • 0042166100 scopus 로고    scopus 로고
    • Translational standby sites: How ribosomes may deal with the rapid folding kinetics of mRNA
    • de Smit MH, van Duin J (2003) Translational standby sites: how ribosomes may deal with the rapid folding kinetics of mRNA. J Mol Biol 331:737-743
    • (2003) J Mol Biol , vol.331 , pp. 737-743
    • De Smit, M.H.1    Van Duin, J.2
  • 11
    • 0032506003 scopus 로고    scopus 로고
    • Ribosomes can slide over and beyond "hungry" codons, resuming protein chain elongation many nucleotides downstream
    • Gallant JA, Lindsley D (1998) Ribosomes can slide over and beyond "hungry" codons, resuming protein chain elongation many nucleotides downstream. Proc Natl Acad Sci USA 95:13771-13776
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 13771-13776
    • Gallant, J.A.1    Lindsley, D.2
  • 12
    • 36849148382 scopus 로고
    • The RNA world
    • Gilbert W (1986) The RNA world. Nature 319:618
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 13
    • 7644223774 scopus 로고    scopus 로고
    • Why is transcription coupled to translation in bacteria?
    • Gowrishankar J, Harinarayanan R (2004) Why is transcription coupled to translation in bacteria? Mol Microbiol 54:598-603
    • (2004) Mol Microbiol , vol.54 , pp. 598-603
    • Gowrishankar, J.1    Harinarayanan, R.2
  • 14
    • 0035396727 scopus 로고    scopus 로고
    • Internal ribosome entry sites in eukaryotic mRNA molecules
    • Hellen CU, Sarnow P (2001) Internal ribosome entry sites in eukaryotic mRNA molecules. Genes Dev 15:1593-1612
    • (2001) Genes Dev , vol.15 , pp. 1593-1612
    • Hellen, C.U.1    Sarnow, P.2
  • 15
    • 8544281643 scopus 로고    scopus 로고
    • In vivo effect of inactivation of ribosome recycling factor-fate of ribosomes after unscheduled translation downstream of open reading frame
    • Hirokawa G, Inokuchi H, Kaji H, Igarashi K, Kaji A (2004) In vivo effect of inactivation of ribosome recycling factor-fate of ribosomes after unscheduled translation downstream of open reading frame. Mol Microbiol 54:1011-1021
    • (2004) Mol Microbiol , vol.54 , pp. 1011-1021
    • Hirokawa, G.1    Inokuchi, H.2    Kaji, H.3    Igarashi, K.4    Kaji, A.5
  • 16
    • 0035839002 scopus 로고    scopus 로고
    • Coupled transcription and translation within nuclei of mammalian cells
    • Iborra FJ, Jackson DA, Cook PR (2001) Coupled transcription and translation within nuclei of mammalian cells. Science 293:1139-1142
    • (2001) Science , vol.293 , pp. 1139-1142
    • Iborra, F.J.1    Jackson, D.A.2    Cook, P.R.3
  • 17
    • 0035823036 scopus 로고    scopus 로고
    • Evidence for a pioneer round of mRNA translation: MRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20
    • Ishigaki Y, Li X, Serin G, Maquat LE (2001) Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20. Cell 106:607-617
    • (2001) Cell , vol.106 , pp. 607-617
    • Ishigaki, Y.1    Li, X.2    Serin, G.3    Maquat, L.E.4
  • 18
    • 0037062978 scopus 로고    scopus 로고
    • The antiquity of RNA-based evolution
    • Joyce GF (2002) The antiquity of RNA-based evolution. Nature 418:214-221
    • (2002) Nature , vol.418 , pp. 214-221
    • Joyce, G.F.1
  • 19
    • 0038121152 scopus 로고    scopus 로고
    • Signal recognition particle-dependent protein targeting, universal to all kingdoms of life
    • Koch HG, Moser M, Muller M (2003) Signal recognition particle-dependent protein targeting, universal to all kingdoms of life. Rev Physiol Biochem Pharmacol 146:55-94
    • (2003) Rev Physiol Biochem Pharmacol , vol.146 , pp. 55-94
    • Koch, H.G.1    Moser, M.2    Muller, M.3
  • 20
    • 0019837857 scopus 로고
    • Secondary structure formation during RNA synthesis
    • Kramer FR, Mills DR (1981) Secondary structure formation during RNA synthesis. Nucleic Acids Res 9:5109-5124
    • (1981) Nucleic Acids Res , vol.9 , pp. 5109-5124
    • Kramer, F.R.1    Mills, D.R.2
  • 21
    • 0002382573 scopus 로고    scopus 로고
    • The genomic tag hypothesis: What molecular fossils tell us about the evolution of tRNA
    • 2 Cold Spring Harbor Laboratory Press New York
    • Maizels N, Weiner AM (1999) The genomic tag hypothesis: what molecular fossils tell us about the evolution of tRNA. In: Gesteland RF, Cech TR, Atkins JF (eds) The RNA world, 2nd edn. Cold Spring Harbor Laboratory Press, New York, pp 79-111
    • (1999) The RNA World , pp. 79-111
    • Maizels, N.1    Weiner, A.M.2    Gesteland, R.F.3    Cech, T.R.4    Atkins, J.F.5
  • 22
    • 25644436944 scopus 로고    scopus 로고
    • Translation initiation: Structures, mechanisms and evolution
    • Marintchev A, Wagner G (2004) Translation initiation: structures, mechanisms and evolution. Q Rev Biophys 37:197-284
    • (2004) Q Rev Biophys , vol.37 , pp. 197-284
    • Marintchev, A.1    Wagner, G.2
  • 23
    • 33644783626 scopus 로고    scopus 로고
    • Introns and the origin of nucleus-cytosol compartmentalization
    • Martin W, Koonin EV (2006) Introns and the origin of nucleus-cytosol compartmentalization. Nature 440:41-45
    • (2006) Nature , vol.440 , pp. 41-45
    • Martin, W.1    Koonin, E.V.2
  • 24
    • 0014107493 scopus 로고
    • An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule
    • Mills DR, Peterson RL, Spiegelman S (1967) An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule. Proc Natl Acad Sci USA 58:217-224
    • (1967) Proc Natl Acad Sci USA , vol.58 , pp. 217-224
    • Mills, D.R.1    Peterson, R.L.2    Spiegelman, S.3
  • 25
    • 3042690803 scopus 로고    scopus 로고
    • Translation initiation with 70S ribosomes: An alternative pathway for leaderless mRNAs
    • Moll I, Hirokawa G, Kiel MC, Kaji A, Blasi U (2004) Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs. Nucleic Acids Res 32:3354-3363
    • (2004) Nucleic Acids Res , vol.32 , pp. 3354-3363
    • Moll, I.1    Hirokawa, G.2    Kiel, M.C.3    Kaji, A.4    Blasi, U.5
  • 26
  • 27
    • 0842267214 scopus 로고    scopus 로고
    • Reprogrammed genetic decoding in cellular gene expression
    • Namy O, Rousset JP, Napthine S, Brierley I (2004) Reprogrammed genetic decoding in cellular gene expression. Mol Cell 13:157-168
    • (2004) Mol Cell , vol.13 , pp. 157-168
    • Namy, O.1    Rousset, J.P.2    Napthine, S.3    Brierley, I.4
  • 28
    • 9344271130 scopus 로고    scopus 로고
    • The driving force for molecular evolution of translation
    • Noller HF (2004) The driving force for molecular evolution of translation. RNA 10:1833-1837
    • (2004) RNA , vol.10 , pp. 1833-1837
    • Noller, H.F.1
  • 29
    • 18844413446 scopus 로고    scopus 로고
    • Structural insights into translational fidelity
    • Ogle JM, Ramakrishnan V (2005) Structural insights into translational fidelity. Annu Rev Biochem 74:129-177
    • (2005) Annu Rev Biochem , vol.74 , pp. 129-177
    • Ogle, J.M.1    Ramakrishnan, V.2
  • 30
    • 0024836446 scopus 로고
    • The origin of polynucleotide-directed protein synthesis
    • Orgel LE (1989) The origin of polynucleotide-directed protein synthesis. J Mol Evol 29:465-474
    • (1989) J Mol Evol , vol.29 , pp. 465-474
    • Orgel, L.E.1
  • 31
    • 0042475265 scopus 로고    scopus 로고
    • Some consequences of the RNA world hypothesis
    • Orgel LE (2003) Some consequences of the RNA world hypothesis. Orig Life Evol Biosph 33:211-218
    • (2003) Orig Life Evol Biosph , vol.33 , pp. 211-218
    • Orgel, L.E.1
  • 32
    • 18944364304 scopus 로고    scopus 로고
    • Sequence of steps in ribosome recycling as defined by kinetic analysis
    • Peske F, Rodnina MV, Wintermeyer W (2005) Sequence of steps in ribosome recycling as defined by kinetic analysis. Mol Cell 18:403-412
    • (2005) Mol Cell , vol.18 , pp. 403-412
    • Peske, F.1    Rodnina, M.V.2    Wintermeyer, W.3
  • 33
    • 0030987608 scopus 로고    scopus 로고
    • RNA folding kinetics regulates translation of phage MS2 maturation gene
    • Poot RA, Tsareva NV, Boni IV, van Duin J (1997) RNA folding kinetics regulates translation of phage MS2 maturation gene. Proc Natl Acad Sci USA 94:10110-10115
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 10110-10115
    • Poot, R.A.1    Tsareva, N.V.2    Boni, I.V.3    Van Duin, J.4
  • 34
    • 0023512932 scopus 로고
    • Evolution of the RNA coliphages: The role of secondary structures during RNA replication
    • Priano C, Kramer FR, Mills DR (1987) Evolution of the RNA coliphages: the role of secondary structures during RNA replication. Cold Spring Harbor Symp Quant Biol 52:321-330
    • (1987) Cold Spring Harbor Symp Quant Biol , vol.52 , pp. 321-330
    • Priano, C.1    Kramer, F.R.2    Mills, D.R.3
  • 35
    • 14244264774 scopus 로고    scopus 로고
    • Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains
    • Quan S, Zhang N, French S, Squires CL (2005) Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains. J Bacteriol 187:1632-1638
    • (2005) J Bacteriol , vol.187 , pp. 1632-1638
    • Quan, S.1    Zhang, N.2    French, S.3    Squires, C.L.4
  • 36
    • 10644284795 scopus 로고    scopus 로고
    • RNA interference and double-stranded-RNA-activated pathways
    • Sledz CA, Williams BR (2004) RNA interference and double-stranded-RNA- activated pathways. Biochem Soc Trans 32:952-956
    • (2004) Biochem Soc Trans , vol.32 , pp. 952-956
    • Sledz, C.A.1    Williams, B.R.2
  • 37
    • 0033758820 scopus 로고    scopus 로고
    • Proteins shared by the transcription and translation machines
    • Squires CL, Zaporojets D (2000) Proteins shared by the transcription and translation machines. Annu Rev Microbiol 54:775-798
    • (2000) Annu Rev Microbiol , vol.54 , pp. 775-798
    • Squires, C.L.1    Zaporojets, D.2
  • 38
    • 0141638443 scopus 로고    scopus 로고
    • Keeping RNA and DNA apart during transcription
    • Svejstrup J (2003) Keeping RNA and DNA apart during transcription. Mol Cell 12:538-539
    • (2003) Mol Cell , vol.12 , pp. 538-539
    • Svejstrup, J.1
  • 39
    • 11844292767 scopus 로고    scopus 로고
    • MRNA helicase activity of the ribosome
    • Takyar S, Hickerson RP, Noller HF (2005) mRNA helicase activity of the ribosome. Cell 120:49-58
    • (2005) Cell , vol.120 , pp. 49-58
    • Takyar, S.1    Hickerson, R.P.2    Noller, H.F.3
  • 40
    • 0036300610 scopus 로고    scopus 로고
    • RNA surveillance by nuclear scanning?
    • Wilkinson MF, Shyu AB (2002) RNA surveillance by nuclear scanning? Nat Cell Biol 4:E144-E147
    • (2002) Nat Cell Biol , vol.4
    • Wilkinson, M.F.1    Shyu, A.B.2
  • 41
    • 0034682720 scopus 로고    scopus 로고
    • Initiation of protein synthesis from the a site of the ribosome
    • Wilson JE, Pestova TV, Hellen CU, Sarnow P (2000) Initiation of protein synthesis from the A site of the ribosome. Cell 102:511-520
    • (2000) Cell , vol.102 , pp. 511-520
    • Wilson, J.E.1    Pestova, T.V.2    Hellen, C.U.3    Sarnow, P.4
  • 42
    • 0034903851 scopus 로고    scopus 로고
    • Translation: In retrospect and prospect
    • Woese CR (2001) Translation: in retrospect and prospect. RNA 7:1055-1067
    • (2001) RNA , vol.7 , pp. 1055-1067
    • Woese, C.R.1
  • 43
    • 23944517735 scopus 로고    scopus 로고
    • Evolution of the genetic triplet code via two types of doublet codons
    • Wu HL, Bagby S, van den Elsen JM (2005) Evolution of the genetic triplet code via two types of doublet codons. J Mol Evol 61:54-64
    • (2005) J Mol Evol , vol.61 , pp. 54-64
    • Wu, H.L.1    Bagby, S.2    Van Den Elsen, J.M.3
  • 44
    • 0033986936 scopus 로고    scopus 로고
    • Transcription attenuation: Once viewed as a novel regulatory strategy
    • Yanofsky C (2000) Transcription attenuation: once viewed as a novel regulatory strategy. J Bacteriol 182:1-8
    • (2000) J Bacteriol , vol.182 , pp. 1-8
    • Yanofsky, C.1
  • 45
    • 2542470615 scopus 로고    scopus 로고
    • The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
    • Youngman EM, Brunelle JL, Kochaniak AB, Green R (2004) The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell 117:589-599
    • (2004) Cell , vol.117 , pp. 589-599
    • Youngman, E.M.1    Brunelle, J.L.2    Kochaniak, A.B.3    Green, R.4
  • 46
    • 20444420154 scopus 로고    scopus 로고
    • Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G
    • Zavialov AV, Hauryliuk VV, Ehrenberg M (2005) Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G. Mol Cell 18:675-686
    • (2005) Mol Cell , vol.18 , pp. 675-686
    • Zavialov, A.V.1    Hauryliuk, V.V.2    Ehrenberg, M.3


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