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Volumn 23, Issue 21, 2007, Pages 2851-2858

Creating protein models from electron-density maps using particle-filtering methods

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; ATOM; BIOFILTER; COMPUTER ANALYSIS; CRYSTALLOGRAPHY; ELECTRON; INTERMETHOD COMPARISON; MOLECULAR MODEL; PEPTIDE MAPPING; PRIORITY JOURNAL; STRUCTURAL BIOINFORMATICS; STRUCTURAL PROTEOMICS; STRUCTURE ANALYSIS;

EID: 36448983552     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm480     Document Type: Article
Times cited : (26)

References (23)
  • 1
    • 0036475447 scopus 로고    scopus 로고
    • A tutorial on particle filters
    • Arulampalam,M.S. et al. (2001) A tutorial on particle filters. IEEE Trans. Signal Process., 50, 174-188.
    • (2001) IEEE Trans. Signal Process , vol.50 , pp. 174-188
    • Arulampalam, M.S.1
  • 2
    • 4344592748 scopus 로고    scopus 로고
    • The impact of structural genomics on the protein data bank
    • Berman,H.M. and Westbrook,J.D. (2004) The impact of structural genomics on the protein data bank. Am. J. Pharmacogenomics, 4, 247-252.
    • (2004) Am. J. Pharmacogenomics , vol.4 , pp. 247-252
    • Berman, H.M.1    Westbrook, J.D.2
  • 3
    • 0026597444 scopus 로고
    • Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
    • Brunger,A.T. (1992) Free R value: A novel statistical quantity for assessing the accuracy of crystal structures. Nature, 355, 472-475.
    • (1992) Nature , vol.355 , pp. 472-475
    • Brunger, A.T.1
  • 4
    • 85005537029 scopus 로고
    • Thermal motion and conformational disorder in protein crystal-structures - comparison of multi-conformer and time-averaging models
    • Burling,F.T. and Brunger,A.T. (1994) Thermal motion and conformational disorder in protein crystal-structures - comparison of multi-conformer and time-averaging models. Isr. J. Chem., 34, 165-175.
    • (1994) Isr. J. Chem , vol.34 , pp. 165-175
    • Burling, F.T.1    Brunger, A.T.2
  • 5
    • 31144467558 scopus 로고    scopus 로고
    • The impact of structural genomics: Expectations and outcomes
    • Chandonia,J.M. and Brenner,S.E. (2006) The impact of structural genomics: Expectations and outcomes. Science, 311, 347-351.
    • (2006) Science , vol.311 , pp. 347-351
    • Chandonia, J.M.1    Brenner, S.E.2
  • 6
    • 0028103275 scopus 로고    scopus 로고
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr., D50 760-763.
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr., D50 760-763.
  • 7
    • 33748337934 scopus 로고    scopus 로고
    • The Buccaneer software for automated model building.1. Tracing protein chains
    • Cowtan,K. (2006) The Buccaneer software for automated model building.1. Tracing protein chains. Acta Crystallogr., D62, 1002-1011.
    • (2006) Acta Crystallogr , vol.D62 , pp. 1002-1011
    • Cowtan, K.1
  • 8
    • 2342525085 scopus 로고    scopus 로고
    • Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography
    • DePristo,M.A. et al. (2004) Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography. Structure, 12, 911-917.
    • (2004) Structure , vol.12 , pp. 911-917
    • DePristo, M.A.1
  • 9
    • 33747883938 scopus 로고    scopus 로고
    • A probabilistic approach to protein backbone tracing in electron-density maps
    • DiMaio,F. et al. (2006) A probabilistic approach to protein backbone tracing in electron-density maps. Bioinformatics, 22 e81-e89.
    • (2006) Bioinformatics , vol.22
    • DiMaio, F.1
  • 10
    • 49049104789 scopus 로고    scopus 로고
    • Improved methods for template-matching in electron-density maps using spherical harmonics
    • IEEE Press, Fremont, CA
    • DiMaio,F. et al. (2007) Improved methods for template-matching in electron-density maps using spherical harmonics. In Proceedings of the IEEE Conference on Bioinformatics and Biomedicine. IEEE Press, Fremont, CA.
    • (2007) Proceedings of the IEEE Conference on Bioinformatics and Biomedicine
    • DiMaio, F.1
  • 11
    • 0001460136 scopus 로고    scopus 로고
    • On sequential Monte Carlo sampling methods for Bayesian filtering
    • Doucet,A. et al. (2000) On sequential Monte Carlo sampling methods for Bayesian filtering. Stat. Comput., 10, 197-208.
    • (2000) Stat. Comput , vol.10 , pp. 197-208
    • Doucet, A.1
  • 12
    • 33644807131 scopus 로고    scopus 로고
    • Is one solution good enough?
    • Furnham,N. et al. (2006) Is one solution good enough? Nat. Struct. Mol. Biol., 13, 184-185.
    • (2006) Nat. Struct. Mol. Biol , vol.13 , pp. 184-185
    • Furnham, N.1
  • 13
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images
    • Geman,S. and Geman,D. (1984) Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images. IEEE Trans. PAMI, 6, 721-741.
    • (1984) IEEE Trans. PAMI , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 14
    • 0036898446 scopus 로고    scopus 로고
    • Automatic modeling of protein back-bones in electron density maps
    • Ioerger,T.R. and Sacchettini,J.C. (2002) Automatic modeling of protein back-bones in electron density maps. Acta Crystallogr, D58, 2043-2054.
    • (2002) Acta Crystallogr , vol.D58 , pp. 2043-2054
    • Ioerger, T.R.1    Sacchettini, J.C.2
  • 15
    • 0348014440 scopus 로고    scopus 로고
    • The TEXTAL system: Artificial intelligence techniques for automated protein model building
    • Ioerger,T.R. and Sacchettini,J.C. (2003) The TEXTAL system: Artificial intelligence techniques for automated protein model building. Methods Enzymol., 374, 244-270.
    • (2003) Methods Enzymol , vol.374 , pp. 244-270
    • Ioerger, T.R.1    Sacchettini, J.C.2
  • 16
    • 84950943564 scopus 로고
    • Sequential imputations and Bayesian missing data problems
    • Kong,A. et al. (1994) Sequential imputations and Bayesian missing data problems. J. Am. Stat. Assoc., 89, 278-288.
    • (1994) J. Am. Stat. Assoc , vol.89 , pp. 278-288
    • Kong, A.1
  • 17
    • 34548387498 scopus 로고    scopus 로고
    • Ensemble refinement of protein crystal structures
    • Levin,E.J. et al. (2007) Ensemble refinement of protein crystal structures. In Structure, 15, 1040-1052.
    • (2007) Structure , vol.15 , pp. 1040-1052
    • Levin, E.J.1
  • 18
    • 0347383760 scopus 로고    scopus 로고
    • ARP/wARP and automatic interpretation of protein electron density maps
    • Morris,R. et al. (2003) ARP/wARP and automatic interpretation of protein electron density maps. Methods Enzymol., 374, 229-244.
    • (2003) Methods Enzymol , vol.374 , pp. 229-244
    • Morris, R.1
  • 19
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov,G.N. et al. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr., D53, 240-255.
    • (1997) Acta Crystallogr , vol.D53 , pp. 240-255
    • Murshudov, G.N.1
  • 20
    • 0037069324 scopus 로고    scopus 로고
    • A cell-free protein synthesis system for high-throughput proteomics
    • Sawasaki,T. et al. (2002) A cell-free protein synthesis system for high-throughput proteomics. Proc. Natl Acad. Sci. USA, 99, 14652-14657.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 14652-14657
    • Sawasaki, T.1
  • 21
    • 11144357937 scopus 로고    scopus 로고
    • Automated sample mounting and alignment system for biological crystallography at a synchrotron source
    • Snell,G. et al. (2004) Automated sample mounting and alignment system for biological crystallography at a synchrotron source. Structure, 12, 537-545.
    • (2004) Structure , vol.12 , pp. 537-545
    • Snell, G.1
  • 22
    • 0037237545 scopus 로고    scopus 로고
    • Automated main-chain model building by template-matching and iterative fragment extension
    • Terwilliger,T.C. (2002) Automated main-chain model building by template-matching and iterative fragment extension. Acta Crystallogr. D59, 38-44.
    • (2002) Acta Crystallogr , vol.D59 , pp. 38-44
    • Terwilliger, T.C.1
  • 23
    • 0043180474 scopus 로고    scopus 로고
    • PISCES: A protein sequence culling server
    • Wang,G. and Dunbrack,R.L. (2003) PISCES: A protein sequence culling server. Bioinformatics, 19, 1589-1591.
    • (2003) Bioinformatics , vol.19 , pp. 1589-1591
    • Wang, G.1    Dunbrack, R.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.