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Volumn 16, Issue 12, 2007, Pages 2618-2625

Requirements for peptidyl-prolyl isomerization activity: A comprehensive mutational analysis of the substrate-binding cavity of FK506-binding protein 12

Author keywords

Comprehensive mutational analysis; Human FK506 binding protein 12; Peptidyl prolyl isomerase; Substrate binding cavity

Indexed keywords

AMINO ACID; ARGININE; ASPARAGINE; CHYMOTRYPSIN; FK 506 BINDING PROTEIN; FK 506 BINDING PROTEIN 12; MUTANT PROTEIN; PEPTIDE; PEPTIDYLPROLYL ISOMERASE; PHENYLALANINE; TRYPTOPHAN; UNCLASSIFIED DRUG; VALINE;

EID: 36448957938     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.073203707     Document Type: Article
Times cited : (33)

References (32)
  • 1
    • 33644852955 scopus 로고    scopus 로고
    • Peptidyl-prolyl cis-trans isomerases (immunophilins) and their roles in parasite biochemistry, host-parasite interaction and antiparasitic drug action
    • doi: 10.1016/j.ijpara.2005.11.003
    • Bell, A., Monaghan, P., and Page, A.P. 2006. Peptidyl-prolyl cis-trans isomerases (immunophilins) and their roles in parasite biochemistry, host-parasite interaction and antiparasitic drug action. Int. J. Parasitol. 36: 261-276. doi: 10.1016/j.ijpara.2005.11.003.
    • (2006) Int. J. Parasitol , vol.36 , pp. 261-276
    • Bell, A.1    Monaghan, P.2    Page, A.P.3
  • 3
    • 0025647885 scopus 로고
    • Two distinct signal transmission pathways in T lymphocytes are inhibited by complexes formed between an immunophilin and either FK506 or rapamycin
    • Bierer, B.E., Mattila, P.S., Standaert, R.F., Herzenberg, L.A., Burakoff, S.J., Crabtree, G., and Schreiber, S.L. 1990. Two distinct signal transmission pathways in T lymphocytes are inhibited by complexes formed between an immunophilin and either FK506 or rapamycin. Proc. Natl. Acad. Sci. 87: 9231-9235.
    • (1990) Proc. Natl. Acad. Sci , vol.87 , pp. 9231-9235
    • Bierer, B.E.1    Mattila, P.S.2    Standaert, R.F.3    Herzenberg, L.A.4    Burakoff, S.J.5    Crabtree, G.6    Schreiber, S.L.7
  • 4
    • 4644219860 scopus 로고    scopus 로고
    • Isomerase-independent chaperone function of cyclophilin ensures aggregation prevention of adenosine kinase both in vitro and under in vivo conditions
    • Chakraborty, A., Sen, B., Datta, R., and Datta, A.K. 2004. Isomerase-independent chaperone function of cyclophilin ensures aggregation prevention of adenosine kinase both in vitro and under in vivo conditions. Biochemistry 43: 11862-11872.
    • (2004) Biochemistry , vol.43 , pp. 11862-11872
    • Chakraborty, A.1    Sen, B.2    Datta, R.3    Datta, A.K.4
  • 5
    • 0026755302 scopus 로고
    • Structural and functional characterization of Escherichia coli peptidylprolyl cis-trans isomerases
    • Compton, L.A., Davis, J.M., Macdonald, J.R., and Bachinger, H.P. 1992. Structural and functional characterization of Escherichia coli peptidylprolyl cis-trans isomerases. Eur. J. Biochem. 206: 927-934.
    • (1992) Eur. J. Biochem , vol.206 , pp. 927-934
    • Compton, L.A.1    Davis, J.M.2    Macdonald, J.R.3    Bachinger, H.P.4
  • 6
    • 0027293982 scopus 로고
    • Structural similarity of the binding sites of cyclophilin A-cyclosporin A and FKBP-FK506 systems
    • Denesyuk, A.I., Vihinen, M., Lundell, J., Zav'yalov, V.P., and Korpela, T. 1993. Structural similarity of the binding sites of cyclophilin A-cyclosporin A and FKBP-FK506 systems. Biochem. Biophys. Res. Commun. 192: 912-917.
    • (1993) Biochem. Biophys. Res. Commun , vol.192 , pp. 912-917
    • Denesyuk, A.I.1    Vihinen, M.2    Lundell, J.3    Zav'yalov, V.P.4    Korpela, T.5
  • 7
    • 0028050923 scopus 로고
    • Peptidyl-prolyl cis/trans isomerases and their effectors
    • Fischer, G. 1994. Peptidyl-prolyl cis/trans isomerases and their effectors. Angew. Chem. Int. Ed. Engl. 33: 1415-1436.
    • (1994) Angew. Chem. Int. Ed. Engl , vol.33 , pp. 1415-1436
    • Fischer, G.1
  • 9
    • 0024370705 scopus 로고
    • Kinetic β-deuterium isotope effects suggest a covalent mechanism for the protein folding enzyme peptidylprolyl cis/trans-isomerase
    • Fischer, G., Berger, E., and Bang, H. 1989a. Kinetic β-deuterium isotope effects suggest a covalent mechanism for the protein folding enzyme peptidylprolyl cis/trans-isomerase. FEBS Lett. 250: 267-270.
    • (1989) FEBS Lett , vol.250 , pp. 267-270
    • Fischer, G.1    Berger, E.2    Bang, H.3
  • 10
    • 0024959449 scopus 로고
    • Cyclophilin and peptidyl-prolyl cis-trans isomerase are probably identical proteins
    • Fischer, G., Wittmann-Liebold, B., Lang, K., Kiefhaber, T., and Schmid, F.X. 1989b. Cyclophilin and peptidyl-prolyl cis-trans isomerase are probably identical proteins. Nature 337: 476-478.
    • (1989) Nature , vol.337 , pp. 476-478
    • Fischer, G.1    Wittmann-Liebold, B.2    Lang, K.3    Kiefhaber, T.4    Schmid, F.X.5
  • 11
    • 0141748498 scopus 로고    scopus 로고
    • Energetic and structural analysis of the role of tryptophan 59 in FKBP12
    • Fulton, K.F., Jackson, S.E., and Buckle, A.M. 2003. Energetic and structural analysis of the role of tryptophan 59 in FKBP12. Biochemistry 42: 2364-2372.
    • (2003) Biochemistry , vol.42 , pp. 2364-2372
    • Fulton, K.F.1    Jackson, S.E.2    Buckle, A.M.3
  • 12
    • 0025373627 scopus 로고
    • Substrate specificities of the peptidyl prolyl cis-trans isomerase activities of cyclophilin and FK-506 binding protein: Evidence for the existence of a family of distinct enzymes
    • Harrison, R.K. and Stein, R.L. 1990. Substrate specificities of the peptidyl prolyl cis-trans isomerase activities of cyclophilin and FK-506 binding protein: Evidence for the existence of a family of distinct enzymes. Biochemistry 29: 3813-3816.
    • (1990) Biochemistry , vol.29 , pp. 3813-3816
    • Harrison, R.K.1    Stein, R.L.2
  • 13
    • 0025756590 scopus 로고
    • Two distinct forms of peptidylprolyl-cis-trans-isomerase are expressed separately in periplasmic and cytoplasmic compartments of Escherichia coli cells
    • Hayano, T., Takahashi, N., Kato, S., Maki, N., and Suzuki, M. 1991. Two distinct forms of peptidylprolyl-cis-trans-isomerase are expressed separately in periplasmic and cytoplasmic compartments of Escherichia coli cells. Biochemistry 30: 3041-3048.
    • (1991) Biochemistry , vol.30 , pp. 3041-3048
    • Hayano, T.1    Takahashi, N.2    Kato, S.3    Maki, N.4    Suzuki, M.5
  • 14
    • 0025783921 scopus 로고
    • Preliminary characterization of a cloned neutral isoelectric form of the human peptidyl prolyl isomerase cyclophilin
    • Holzman, T.F., Egan, D.A., Edalji, R., Simmer, R.L., Helfrich, R., Taylor, A., and Burres, N.S. 1991. Preliminary characterization of a cloned neutral isoelectric form of the human peptidyl prolyl isomerase cyclophilin. J. Biol. Chem. 266: 2474-2479.
    • (1991) J. Biol. Chem , vol.266 , pp. 2474-2479
    • Holzman, T.F.1    Egan, D.A.2    Edalji, R.3    Simmer, R.L.4    Helfrich, R.5    Taylor, A.6    Burres, N.S.7
  • 15
    • 0033524943 scopus 로고    scopus 로고
    • Crystal structure of the cytoplasmic domain of the type I TGFβ receptor in complex with FKBP12
    • Huse, M., Chen, Y.G., Massague, J., and Kuriyan, J. 1999. Crystal structure of the cytoplasmic domain of the type I TGFβ receptor in complex with FKBP12. Cell 96: 425-436.
    • (1999) Cell , vol.96 , pp. 425-436
    • Huse, M.1    Chen, Y.G.2    Massague, J.3    Kuriyan, J.4
  • 16
    • 0034796457 scopus 로고    scopus 로고
    • The TGFβ receptor activation process: An inhibitor- to substrate-binding switch
    • Huse, M., Muir, T.W., Xu, L., Chen, Y.G., Kuriyan, J., and Massague, J. 2001. The TGFβ receptor activation process: An inhibitor- to substrate-binding switch. Mol. Cell 8: 671-682.
    • (2001) Mol. Cell , vol.8 , pp. 671-682
    • Huse, M.1    Muir, T.W.2    Xu, L.3    Chen, Y.G.4    Kuriyan, J.5    Massague, J.6
  • 17
    • 0027483416 scopus 로고
    • Crystal structure of cyclophilin A complexed with substrate Ala-Pro suggests a solvent-assisted mechanism of cis-trans isomerization
    • Ke, H., Mayrose, D., and Cao, W. 1993. Crystal structure of cyclophilin A complexed with substrate Ala-Pro suggests a solvent-assisted mechanism of cis-trans isomerization. Proc. Natl. Acad. Sci. 90: 3324-3328.
    • (1993) Proc. Natl. Acad. Sci , vol.90 , pp. 3324-3328
    • Ke, H.1    Mayrose, D.2    Cao, W.3
  • 18
    • 0025868143 scopus 로고
    • Determination of kinetic constants for peptidyl prolyl cis-trans isomerases by an improved spectrophotometric assay
    • Kofron, J.L., Kuzmic, P., Kishore, V., Colon-Bonilla, E., and Rich, D.H. 1991. Determination of kinetic constants for peptidyl prolyl cis-trans isomerases by an improved spectrophotometric assay. Biochemistry 30: 6127-6134.
    • (1991) Biochemistry , vol.30 , pp. 6127-6134
    • Kofron, J.L.1    Kuzmic, P.2    Kishore, V.3    Colon-Bonilla, E.4    Rich, D.H.5
  • 19
    • 0029970349 scopus 로고    scopus 로고
    • The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer
    • Konno, M., Ito, M., Hayano, T., and Takahashi, N. 1996. The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer. J. Mol. Biol. 256: 897-908.
    • (1996) J. Mol. Biol , vol.256 , pp. 897-908
    • Konno, M.1    Ito, M.2    Hayano, T.3    Takahashi, N.4
  • 20
    • 0026035009 scopus 로고
    • Purification and characterization of human T-cell cyclophilin expressed in Escherichia coli
    • Levy, M.A., Brandt, M., Livi, G.P., and Bergsma, D.J. 1991. Purification and characterization of human T-cell cyclophilin expressed in Escherichia coli. Transplant. Proc. 23: 319-322.
    • (1991) Transplant. Proc , vol.23 , pp. 319-322
    • Levy, M.A.1    Brandt, M.2    Livi, G.P.3    Bergsma, D.J.4
  • 21
    • 0030593468 scopus 로고    scopus 로고
    • Overproduction of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels
    • Miroux, B. and Walker, J.E. 1996. Overproduction of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J. Mol. Biol. 260: 289-298.
    • (1996) J. Mol. Biol , vol.260 , pp. 289-298
    • Miroux, B.1    Walker, J.E.2
  • 22
    • 0028871804 scopus 로고
    • How to measure and predict the molar absorption coefficient of a protein
    • Pace, C.N., Vajdos, F., Fee, L., Grimsley, G., and Gray, T. 1995. How to measure and predict the molar absorption coefficient of a protein. Protein Sci. 4: 2411-2423.
    • (1995) Protein Sci , vol.4 , pp. 2411-2423
    • Pace, C.N.1    Vajdos, F.2    Fee, L.3    Grimsley, G.4    Gray, T.5
  • 23
    • 0035715945 scopus 로고    scopus 로고
    • Prolyl isomerases
    • Schmid, F.X. 2001. Prolyl isomerases. Adv. Protein Chem. 59: 243-282.
    • (2001) Adv. Protein Chem , vol.59 , pp. 243-282
    • Schmid, F.X.1
  • 24
    • 0033062255 scopus 로고    scopus 로고
    • R73A and H144Q mutants of the yeast mitochondrial cyclophilin Cpr3 exhibit a low prolyl isomerase activity in both peptide and protein-folding assays
    • Scholz, C., Maier, P., Dolinski, K., Heitman, J., and Schmid, F.X. 1999. R73A and H144Q mutants of the yeast mitochondrial cyclophilin Cpr3 exhibit a low prolyl isomerase activity in both peptide and protein-folding assays. FEBS Lett. 443: 367-369.
    • (1999) FEBS Lett , vol.443 , pp. 367-369
    • Scholz, C.1    Maier, P.2    Dolinski, K.3    Heitman, J.4    Schmid, F.X.5
  • 25
    • 33846010183 scopus 로고    scopus 로고
    • Shaw, P.E. 2007. Peptidyl-prolyl cis/trans isomerases and transcription: Is there a twist in the tail? EMBO Rep. 8: 40-45.
    • Shaw, P.E. 2007. Peptidyl-prolyl cis/trans isomerases and transcription: Is there a twist in the tail? EMBO Rep. 8: 40-45.
  • 26
    • 33746270438 scopus 로고    scopus 로고
    • Cyclophilin, TRIM5, and innate immunity to HIV-1
    • Sokolskaja, E. and Luban, J. 2006. Cyclophilin, TRIM5, and innate immunity to HIV-1. Curr. Opin. Microbiol. 9: 404-408.
    • (2006) Curr. Opin. Microbiol , vol.9 , pp. 404-408
    • Sokolskaja, E.1    Luban, J.2
  • 27
    • 0028836746 scopus 로고
    • Characterization of an exchange reaction between soluble FKBP-12 and the FKBP.ryanodine receptor complex. Modulation by FKBP mutants deficient in peptidyl-prolyl isomerase activity
    • Timerman, A.P., Wiederrecht, G., Marcy, A., and Fleischer, S. 1995. Characterization of an exchange reaction between soluble FKBP-12 and the FKBP.ryanodine receptor complex. Modulation by FKBP mutants deficient in peptidyl-prolyl isomerase activity. J. Biol. Chem. 270: 2451-2459.
    • (1995) J. Biol. Chem , vol.270 , pp. 2451-2459
    • Timerman, A.P.1    Wiederrecht, G.2    Marcy, A.3    Fleischer, S.4
  • 28
    • 0031589163 scopus 로고    scopus 로고
    • Comparative mutational analysis of peptidyl prolyl cis/trans isomerases: Active sites of Escherichia coli trigger factor and human FKBP12
    • Tradler, T., Stoller, G., Rucknagel, K.P., Schierhorn, A., Rahfeld, J.U., and Fischer, G. 1997. Comparative mutational analysis of peptidyl prolyl cis/trans isomerases: Active sites of Escherichia coli trigger factor and human FKBP12. FEBS Lett. 407: 184-190.
    • (1997) FEBS Lett , vol.407 , pp. 184-190
    • Tradler, T.1    Stoller, G.2    Rucknagel, K.P.3    Schierhorn, A.4    Rahfeld, J.U.5    Fischer, G.6
  • 29
    • 0026012054 scopus 로고
    • FKB1 encodes a nonessential FK 506-binding protein in Saccharomyces cerevisiae and contains regions suggesting homology to the cyclophilins
    • Wiederrecht, G., Brizuela, L., Elliston, K., Sigal, N.H., and Siekierka, J.J. 1991. FKB1 encodes a nonessential FK 506-binding protein in Saccharomyces cerevisiae and contains regions suggesting homology to the cyclophilins. Proc. Natl. Acad. Sci. 88: 1029-1033.
    • (1991) Proc. Natl. Acad. Sci , vol.88 , pp. 1029-1033
    • Wiederrecht, G.1    Brizuela, L.2    Elliston, K.3    Sigal, N.H.4    Siekierka, J.J.5
  • 31
    • 20044396197 scopus 로고    scopus 로고
    • Roles of cyclophilins in cancers and other organ systems
    • Yao, Q., Li, M., Yang, H., Chai, H., Fisher, W., and Chen, C. 2005. Roles of cyclophilins in cancers and other organ systems. World J. Surg. 29: 276-280.
    • (2005) World J. Surg , vol.29 , pp. 276-280
    • Yao, Q.1    Li, M.2    Yang, H.3    Chai, H.4    Fisher, W.5    Chen, C.6
  • 32
    • 0028170657 scopus 로고
    • pH titration of the histidine residues of cyclophilin and FK506 binding protein in the absence and presence of immunosuppressant ligands
    • Yu, L. and Fesik, S.W. 1994. pH titration of the histidine residues of cyclophilin and FK506 binding protein in the absence and presence of immunosuppressant ligands. Biochim. Biophys. Acta 1209: 24-32.
    • (1994) Biochim. Biophys. Acta , vol.1209 , pp. 24-32
    • Yu, L.1    Fesik, S.W.2


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