2D NMR metabonomic analysis: A novel method for automated peak alignment

Bioinformatics

Volumn 23, Issue 21, 2007, Pages 2926-2933

  Zheng, Ming ^a   Lu, Peng ^a   Liu, Yanzhou ^a   Pease, Joseph ^a   Usuka, Jonathan ^a   Liao, Guochun ^a   Peltz, Gary ^a  

^a ROCHE BIOSCIENCE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PARACETAMOL;

ALGORITHM; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; AUTOANALYSIS; DISEASE PREDISPOSITION; DRUG INDUCED DISEASE; LIVER TOXICITY; MALE; METABOLITE; METABOLOMICS; MOUSE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; SINGLE DRUG DOSE; STATISTICAL ANALYSIS; VALIDATION STUDY;

EID: 36448946215     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm427     Document Type: Article

References (13)

1. Anthony,M.L. et al. (1994) Pattern recognition classification of the site of nephrotoxicity based on metabolic data derived from proton nuclear magnetic resonance spectra of urine. Mol. Pharmacol., 46, 199-211.
2. Bartolone,J.B. et al. (1987) Immunochemical detection of acetaminophen-bound liver proteins, Biochem. Pharmacol., 36, 1193-1196.
3. Bessems,J.G. and Vermeulen,N.P. (2001) Paracetamol (acetaminophen)-induced toxicity: Molecular and biochemical mechanisms, analogues and protective approaches. Crit. Rev. Toxicol., 31 55-138.
4. Chui,H. and Rangarajan,A. (2000) A new algorithm from non-rigid point matching. IEEE Conference on Computer Vision and Pattern Recognition (CVPR). Vol. II, pp. 44-51.
5. Du,P. et al. (2006) Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics,. 22, 2059-2065.
6. Ewens,A. et al. (2006) Doxorubicin plus interleukin-21 chemoimmunotherapy against breast cancer in mice. Cancer Res., 66, 5419-5426.
7. Geiger,D. and Girosi,F. (1991) Parallel and deterministic algorithms from mrfs-surface reconstruction. IEEE Trans, Pattern Anal. Mach. Intell., 13, 401-412.
8. Gold,S. and Rangarajan,A. (1996) A graduated assignment algorithm for graph matching. IEEE Trans. Pattern Anal. Mach. Intern., 18, 377-388.
9. James, L.P. et al. (2003) Acetaminophen-induced hepatotoxicity. Drug Metab. Dispos., 31, 1499-1506.
10. Lu,P. et al. (2007) Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome. Metab. Eng., 9, 8-20.
11. Rangarajan,A. et al. (1997) A robust point matching algorithm for autoradiograph alignment. Vis. Biomed. Comput., 1, 379-398.
12. Smith,C.A. et al. (2006) XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem., 78, 779-787.
13. Weljie,A.M. et al. (2006) Targeted profiling: Quantitative analysis of 1H NMR metabolomics data. Anal. Chem., 78, 4430-4442.