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Volumn 162, Issue 2, 2002, Pages 951-960

A penalized likelihood method for mapping epistatic quantitative trait loci with one-dimensional genome searches

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CROSS BREEDING; GENE MAPPING; GENETIC ANALYSIS; GENETIC EPISTASIS; GENOME; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; STATISTICAL ANALYSIS; STRAIN DIFFERENCE; CHROMOSOME MAP; GENETIC MARKER; GENETICS; INBREEDING; METHODOLOGY; REGRESSION ANALYSIS; STATISTICAL MODEL; STATISTICS;

EID: 0036811709     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (43)

References (39)
  • 2
    • 0033879555 scopus 로고    scopus 로고
    • The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci
    • Carlborg, Ö, L. Andersson and B. Kinghorn, 2000 The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci. Genetics 155: 2003-2010.
    • (2000) Genetics , vol.155 , pp. 2003-2010
    • Carlborg, Ö.1    Andersson, L.2    Kinghorn, B.3
  • 3
    • 0030918297 scopus 로고    scopus 로고
    • EPISTAT: A computer program for identifying and testing interactions between pairs of quantitative trait loci
    • Chase, K., F. R. Adler and K. G. Lark, 1997 EPISTAT: A computer program for identifying and testing interactions between pairs of quantitative trait loci. Theor. Appl. Genet. 94: 724-730.
    • (1997) Theor. Appl. Genet. , vol.94 , pp. 724-730
    • Chase, K.1    Adler, F.R.2    Lark, K.G.3
  • 4
    • 0030539336 scopus 로고    scopus 로고
    • Markov chain Monte Carlo convergence diagnostics: A comparative review
    • Cowles, M. K., and B. P. Carlin, 1996 Markov chain Monte Carlo convergence diagnostics: A comparative review. J. Am. Stat. Assoc. 91: 883-904.
    • (1996) J. Am. Stat. Assoc. , vol.91 , pp. 883-904
    • Cowles, M.K.1    Carlin, B.P.2
  • 5
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempster, A. P., N. M. Laird and D. B. Rubin, 1977 Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc. Ser. B 39: 1-38.
    • (1977) J. R. Stat. Soc. Ser. B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 7
    • 0033665531 scopus 로고    scopus 로고
    • Estimation of additive, dominance and epistatic variance components using finite locus models implemented with a single-site Gibbs and a descent graph sampler
    • Du, F.-X., and I. Hoeschelle, 2000 Estimation of additive, dominance and epistatic variance components using finite locus models implemented with a single-site Gibbs and a descent graph sampler. Genet. Res. 76: 187-198.
    • (2000) Genet. Res. , vol.76 , pp. 187-198
    • Du, F.-X.1    Hoeschelle, I.2
  • 8
    • 0026289741 scopus 로고
    • Penalized regression in action: The estimation of pollution rises from daily averages
    • Eilers, P. H. C., 1991 Penalized regression in action: The estimation of pollution rises from daily averages. Environmetrics 2: 25-47.
    • (1991) Environmetrics , vol.2 , pp. 25-47
    • Eilers, P.H.C.1
  • 9
    • 25444532788 scopus 로고    scopus 로고
    • Flexible smoothing with B-splines and penalties
    • Eilers, P. H. C., and B. D. Marx, 1996 Flexible smoothing with B-splines and penalties. Stat. Sci. 11: 89-121.
    • (1996) Stat. Sci. , vol.11 , pp. 89-121
    • Eilers, P.H.C.1    Marx, B.D.2
  • 11
    • 0001244316 scopus 로고
    • Marker assisted selection using best linear unbiased prediction
    • Fernando, R. L., and M. Grossman, 1989 Marker assisted selection using best linear unbiased prediction. Genet. Sel. Evol. 21: 467-477.
    • (1989) Genet. Sel. Evol. , vol.21 , pp. 467-477
    • Fernando, R.L.1    Grossman, M.2
  • 12
    • 0029847373 scopus 로고    scopus 로고
    • Complex interactions of new quantitative trait loci, Sluc1, Sluc2, Sluc3, and Sluc4, that influence the susceptibility, to lung cancer in the mouse
    • Fijneman, R. J. A., S. S. de Vries, R. C. Jansen, and P. Demant, 1996 Complex interactions of new quantitative trait loci, Sluc1, Sluc2, Sluc3, and Sluc4, that influence the susceptibility, to lung cancer in the mouse. Nat. Gen. 14: 465-467.
    • (1996) Nat. Gen. , vol.14 , pp. 465-467
    • Fijneman, R.J.A.1    De Vries, S.S.2    Jansen, R.C.3    Demant, P.4
  • 13
    • 0032212483 scopus 로고    scopus 로고
    • High frequency of interactions between lung cancer susceptibility genes in the mouse: Mapping of Sluc5 to Sluc14
    • Fijneman, R. J. A., R. C. Jansen, M. A. van der Valk and P. Demant, 1998 High frequency of interactions between lung cancer susceptibility genes in the mouse: Mapping of Sluc5 to Sluc14. Cancer Res. 58: 4794-4798.
    • (1998) Cancer Res. , vol.58 , pp. 4794-4798
    • Fijneman, R.J.A.1    Jansen, R.C.2    Van der Valk, M.A.3    Demant, P.4
  • 15
    • 0001145061 scopus 로고
    • Ridge-type estimators for regression analysis
    • Goldstein, M., and A. F. M. Smith, 1974 Ridge-type estimators for regression analysis. J. R. Stat. Soc. Ser. B 36: 284-291.
    • (1974) J. R. Stat. Soc. Ser. B , vol.36 , pp. 284-291
    • Goldstein, M.1    Smith, A.F.M.2
  • 16
    • 0035209177 scopus 로고    scopus 로고
    • Large upward bias in estimation of locus-specific effects from genomewide scans
    • Göring, H. H. H., J. D. Terwilliger and J. Blangero, 2001 Large upward bias in estimation of locus-specific effects from genomewide scans. Am. J. Hum. Genet. 69: 1357-1369.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1357-1369
    • Göring, H.H.H.1    Terwilliger, J.D.2    Blangero, J.3
  • 18
    • 0000823232 scopus 로고
    • Bayesian analysis of linkage between genetic markers and quantitative loci. I. Prior knowledge
    • Hoeschele, I., and P. M. VanRaden, 1993 Bayesian analysis of linkage between genetic markers and quantitative loci. I. Prior knowledge. Theor. Appl. Genet. 85: 953-960.
    • (1993) Theor. Appl. Genet. , vol.85 , pp. 953-960
    • Hoeschele, I.1    VanRaden, P.M.2
  • 19
    • 0031817262 scopus 로고    scopus 로고
    • EPISTACY: A SAS program for detecting two-locus epistatic interactions using genetic marker information
    • Holland, J. B., 1998 EPISTACY: A SAS program for detecting two-locus epistatic interactions using genetic marker information. J. Hered. 89: 374-375.
    • (1998) J. Hered. , vol.89 , pp. 374-375
    • Holland, J.B.1
  • 20
    • 0030822104 scopus 로고    scopus 로고
    • QTLs and epistasis associated with vernalization responses in oat
    • Holland, J. B., H. S. Moser, L. S. O'Donoughue and M. Lee, 1997 QTLs and epistasis associated with vernalization responses in oat. Crop Sci. 37: 1306-1316.
    • (1997) Crop Sci. , vol.37 , pp. 1306-1316
    • Holland, J.B.1    Moser, H.S.2    O'Donoughue, L.S.3    Lee, M.4
  • 21
    • 0035148614 scopus 로고    scopus 로고
    • Mapping epistatic quantitative trait loci with one-dimensional genome searches
    • Jannink, J.-L., and R. C. Jansen, 2001 Mapping epistatic quantitative trait loci with one-dimensional genome searches. Genetics 157: 445-454.
    • (2001) Genetics , vol.157 , pp. 445-454
    • Jannink, J.-L.1    Jansen, R.C.2
  • 22
    • 0027247860 scopus 로고
    • Interval mapping of multiple quantitative trait loci
    • Jansen, R. C., 1993 Interval mapping of multiple quantitative trait loci. Genetics 135: 205-211.
    • (1993) Genetics , vol.135 , pp. 205-211
    • Jansen, R.C.1
  • 23
    • 0027946344 scopus 로고
    • Controlling the type I and II errors in mapping quantitative trait loci
    • Jansen, R. C., 1994 Controlling the type I and II errors in mapping quantitative trait loci. Genetics 138: 871-881.
    • (1994) Genetics , vol.138 , pp. 871-881
    • Jansen, R.C.1
  • 24
    • 0003043553 scopus 로고    scopus 로고
    • Quantitative trait loci in inbred lines
    • edited by D. J. Balding, M. Bishop and C. Cannings. Wiley, New York
    • Jansen, R. C., 2001 Quantitative trait loci in inbred lines, pp. 567-597 in Handbook of Statistical Genetics, edited by D. J. Balding, M. Bishop and C. Cannings. Wiley, New York.
    • (2001) Handbook of Statistical Genetics , pp. 567-597
    • Jansen, R.C.1
  • 25
    • 0028348164 scopus 로고
    • High resolution of quantitative traits into multiple loci via interval mapping
    • Jansen, R. C., and P. Stam, 1994 High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447-1455.
    • (1994) Genetics , vol.136 , pp. 1447-1455
    • Jansen, R.C.1    Stam, P.2
  • 26
    • 0032772555 scopus 로고    scopus 로고
    • Multiple interval mapping for quantitative trait loci
    • Kao, C.-H., Z.-B. Zeng, and R. D. Teasdale, 1999 Multiple interval mapping for quantitative trait loci. Genetics 152: 1203-1216.
    • (1999) Genetics , vol.152 , pp. 1203-1216
    • Kao, C.-H.1    Zeng, Z.-B.2    Teasdale, R.D.3
  • 28
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits by using RFLP linkage maps
    • Lander, E. S., and D. Botstein, 1989 Mapping Mendelian factors underlying quantitative traits by using RFLP linkage maps. Genetics 121: 185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.S.1    Botstein, D.2
  • 29
    • 0029014401 scopus 로고
    • Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another
    • Lark, K. G., K. Chase, F. Adler, L. M. Mansur and J. H. Orf, 1995 Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another. Proc. Natl. Acad. Sci. USA 92: 4656-4660.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 4656-4660
    • Lark, K.G.1    Chase, K.2    Adler, F.3    Mansur, L.M.4    Orf, J.H.5
  • 30
    • 0035678872 scopus 로고    scopus 로고
    • Bayesian versus frequentist analysis of multiple quantitative trait loci with an application to an outbred apple cross
    • Maliepaard, C., M. J. Sillanpää, J. W. van Ooijen, R. C. Jansen and E. Arjas, 2001 Bayesian versus frequentist analysis of multiple quantitative trait loci with an application to an outbred apple cross. Theor. Appl. Genet. 103: 1243-1253.
    • (2001) Theor. Appl. Genet. , vol.103 , pp. 1243-1253
    • Maliepaard, C.1    Sillanpää, M.J.2    Van Ooijen, J.W.3    Jansen, R.C.4    Arjas, E.5
  • 31
    • 0030052747 scopus 로고    scopus 로고
    • Fine mapping of colon tumor susceptibility, (Scc) genes in the mouse, different from the genes known to be somatically mutated in colon cancer
    • Moen, C. J. A., P. C. Groot, A. A. M. Hart, M. Snoek and P. Demant, 1996 Fine mapping of colon tumor susceptibility, (Scc) genes in the mouse, different from the genes known to be somatically mutated in colon cancer. Proc. Natl. Acad. Sci. USA 93: 1082-1086.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1082-1086
    • Moen, C.J.A.1    Groot, P.C.2    Hart, A.A.M.3    Snoek, M.4    Demant, P.5
  • 32
    • 0035866354 scopus 로고    scopus 로고
    • Epistatic interactions between skin tumor modifier loci in interspecific (spretus/musculus) backcross mice
    • Nagase, H., J.-H. Mao, J. P. de Koning, T. Minami and A. Balmain, 2001 Epistatic interactions between skin tumor modifier loci in interspecific (spretus/musculus) backcross mice. Cancer Res. 61: 1305-1308.
    • (2001) Cancer Res. , vol.61 , pp. 1305-1308
    • Nagase, H.1    Mao, J.-H.2    De Koning, J.P.3    Minami, T.4    Balmain, A.5
  • 33
    • 0034817026 scopus 로고    scopus 로고
    • A statistical framework for quantitative trait mapping
    • Sen, S., and G. A. Churchill, 2001 A statistical framework for quantitative trait mapping. Genetics 159: 371-387.
    • (2001) Genetics , vol.159 , pp. 371-387
    • Sen, S.1    Churchill, G.A.2
  • 34
    • 0034752971 scopus 로고    scopus 로고
    • A Bayesian MCMC linkage analysis with segregation indicators for complex pedigrees
    • Uimari, P., and M. Sillanpää, 2001 A Bayesian MCMC linkage analysis with segregation indicators for complex pedigrees. Genet. Epidemiol. 21: 224-242.
    • (2001) Genet. Epidemiol. , vol.21 , pp. 224-242
    • Uimari, P.1    Sillanpää, M.2
  • 35
    • 0035297748 scopus 로고    scopus 로고
    • A tutorial on reversible jump MCMC with a view toward applications in QTL-mapping
    • Waagepetersen, R., and D. Sorensen, 2001 A tutorial on reversible jump MCMC with a view toward applications in QTL-mapping. Int. Stat. Rev. 69: 49-61.
    • (2001) Int. Stat. Rev. , vol.69 , pp. 49-61
    • Waagepetersen, R.1    Sorensen, D.2
  • 36
    • 3743109290 scopus 로고    scopus 로고
    • A new approach to the problem of multiple comparisons in the generic dissection of complex traits
    • Weller, J. I., J. Z. Song, D. W. Heyen, H. A. Lewin and M. Ron, 1998 A new approach to the problem of multiple comparisons in the generic dissection of complex traits. Genetics 150: 1699-1706.
    • (1998) Genetics , vol.150 , pp. 1699-1706
    • Weller, J.I.1    Song, J.Z.2    Heyen, D.W.3    Lewin, H.A.4    Ron, M.5
  • 37
    • 0034113697 scopus 로고    scopus 로고
    • Marker-assisted selection using ridge regression
    • Whittaker, J. C., R. Thompson and M. C. Denham, 2000 Marker-assisted selection using ridge regression. Genet. Res. 75: 249-252.
    • (2000) Genet. Res. , vol.75 , pp. 249-252
    • Whittaker, J.C.1    Thompson, R.2    Denham, M.C.3
  • 38
    • 0028224156 scopus 로고
    • Precision mapping of quantitative trait loci
    • Zeng, Z.-B., 1994 Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
    • (1994) Genetics , vol.136 , pp. 1457-1468
    • Zeng, Z.-B.1
  • 39
    • 0033386380 scopus 로고    scopus 로고
    • Estimating the genetic architecture of quantitative traits
    • Zeng, Z.-B., C.-H. Kao and C. J. Basten, 1999 Estimating the genetic architecture of quantitative traits. Genet. Res. 74: 279-289.
    • (1999) Genet. Res. , vol.74 , pp. 279-289
    • Zeng, Z.-B.1    Kao, C.-H.2    Basten, C.J.3


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