On macromolecular refinement at subatomic resolution with interatomic scatterers

Acta Crystallographica Section D: Biological Crystallography

Volumn 63, Issue 11, 2007, Pages 1194-1197

  Afonine, Pavel V ^a   Grosse Kunstleve, Ralf W ^a   Adams, Paul D ^a   Lunin, Vladimir Y ^b   Urzhumtsev, Alexandre ^c,d,e  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b INSTITUTE OF MATHEMATICAL PROBLEMS OF BIOLOGY   (Russian Federation)

^c IGMBC   (France)

^d INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^e UNIVERSITÉ DE LORRAINE   (France)

Author keywords

Deformation density; Interatomic scatterers; PHENIX; Structure refinement; Subatomic resolution

Indexed keywords

ANTIFREEZE PROTEIN; OLIGOPEPTIDE; PHOSPHOLIPASE; PROTEIN; RD3 PROTEIN, EEL; SCORPION VENOM; TRYPSIN; TYROSYL GLYCYL GLYCINE; TYROSYL-GLYCYL-GLYCINE; UNCLASSIFIED DRUG;

ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; COMPUTER PROGRAM; METHODOLOGY; X RAY CRYSTALLOGRAPHY;

ANIMALS; ANTIFREEZE PROTEINS, TYPE III; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; OLIGOPEPTIDES; PHOSPHOLIPASES; PROTEINS; SCORPION VENOMS; SOFTWARE; TRYPSIN;

EID: 36249017836     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444907046148     Document Type: Article

References (31)

1. Adams, P. D., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K. & Terwilliger, T. C. (2002). Acta Cryst. D58, 1948-1954.
2. Afonine, P. V., Grosse-Kunstleve, R. W. & Adams, P. D. (2005). CCP4 Newsl. 42, contribution 8.
3. Afonine, P. V., Lunin, V. Y., Muzet, N. & Urzhumtsev, A. (2004). Acta Cryst. D60, 260-274.
4. Afonine, P. V., Pichon-Pesme, V., Muzet, N., Jelsch, C., Lecomte, C. & Urzhumtsev, A. (2002). CCP4 Newsl. 41, contribution 6.
5. Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, E. F. Jr, Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). J. Mol. Biol. 112, 535-542.
6. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
7. Brock, C. P., Dunitz, J. D. & Hirshfeld, F. L. (1991). Acta Cryst. B47, 789-797.
8. Brünger, A. (1992). Nature (London), 355, 472-475.
9. Coppens, P. (1967). Science, 158, 1577-1579.
10. Dauter, Z., Lamzin, V. S. & Wilson, K. S. (1995). Curr. Opin. Struct. Biol. 5, 784-790.
11. Dauter, Z., Lamzin, V. S. & Wilson, K. S. (1997). Curr. Opin. Struct. Biol. 7, 681-688.
12. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos, CA, USA. http://www.pymol.org.
13. Dittrich, B., Hübschle, C. B., Messerschmidt, M., Kalinowski, R., Girnt, D. & Luger, P. (2005). Acta Cryst. A61, 314-320.
14. Dunitz, J. D. & Seiler, P. (1973). Acta Cryst. B29, 589-595.
15. Fernandez-Serra, M. V., Junquera, J., Jelsch, C., Lecomte, C. & Artacho, E. (2000). Solid State Commun. 116, 395-400.
16. Hansen, N. K. & Coppens, P. (1978). Acta Cryst. A34, 909-921.
17. Hirshfeld, F. L. (1976). Acta Cryst. A32, 239-244.
18. Housset, D., Benabicha, F., Pichon-Pesme, V., Jelsch, C., Maierhofer, A., David, S., Fontecilla-Camps, J. C. & Lecomte, C. (2000). Acta Cryst. D56, 151-160.
19. Jelsch, C., Guillot, B., Lagoutte, A. & Lecomte, C. (2005). J. Appl. Cryst. 38, 38-54.
20. Jelsch, C., Pichon-Pesme, V., Lecomte, C. & Aubry, A. (1998). Acta Cryst. D54, 1306-1318.
21. Jelsch, C., Teeter, M. M., Lamzin, V. S., Pichon-Pesme, V., Blessing, R. H. & Lecomte, C. (2000). Proc. Natl Acad. Sci. USA, 97, 31731-3176.
22. Ko, T.-P., Robinson, H., Gao, Y.-G., Cheng, C.-H. C., DeVries, A. L. & Wang, A. H.-J. (2003). Biophys. J. 84, 1228-1237.
23. Liu, Q., Huang, Q., Teng, M., Weeks, C. M., Jelsch, C., Zhang, R. & Niu, L. (2003). J. Biol. Chem. 278, 41400-41408.
24. Lunin, V. Y., Afonine, P. V. & Urzhumtsev, A. G. (2002). Acta Cryst. A58, 270-282.
25. Petrova, T., Ginell, S., Mitschler, A., Hazemann, I., Schneider, T., Cousido, A., Lunin, V. Y., Joachimiak, A. & Podjarny, A. (2006). Acta Cryst. D62, 1535-1544.
26. Petrova, T. E. & Podjarny, A. D. (2004). Rep. Prog. Phys. 67, 1565-1605.
27. Pichon-Pesme, V., Lecomte, C. & Lachekar, H. (1995). J. Phys. Chem. 99, 6242-6250.
28. Schmidt, A., Jelsch, C., Østergaard, P., Rypniewski, W. & Lamzin, V. S. (2003). J. Biol. Chem. 278, 43357-43362.
29. Volkov, A., Messerschmidt, M. & Coppens, P. (2007). Acta Cryst. D63, 160-170.
30. Vrielink, A. & Sampson, N. (2003). Curr. Opin. Struct. Biol. 13, 709-715.
31. Zarychta, B., Pichon-Pesme, V., Guillot, B., Lecomte, C. & Jelsch, C. (2007). Acta Cryst. A63, 108-125.