Active index model: A unique approach for regional quantitative morphometry in longitudinal and cross-sectional studies

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 6512, Issue PART 1, 2007, Pages

  Saha, P K ^a   Zhang, H ^c   Sonka, M ^a   Christensen, G E ^a   Rajapakse, C S ^b  

^a UNIVERSITY OF IOWA   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c NONE

Author keywords

Active shape model; Cardiac MR segmentation; Digital topology; Fuzzy distance transform; LV+RV functional analysis; Osteoarthritis; Regional analysis; Thin plate spline; Trabecular bone

Indexed keywords

ACTIVE SHAPE MODEL; CARDIAC MR SEGMENTATION; DIGITAL TOPOLOGY; FUZZY DISTANCE TRANSFORM; LV+RV FUNCTIONAL ANALYSIS; OSTEOARTHRITIS; REGIONAL ANALYSIS; THIN PLATE SPLINE; TRABECULAR BONE;

COMPUTERIZED TOMOGRAPHY; DATA REDUCTION; DISEASES; PATIENT TREATMENT; VOLUMETRIC ANALYSIS;

MEDICAL IMAGING;

EID: 36248934232     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.709022     Document Type: Conference Paper

References (34)

1. K. H. Höhne, M. Bomans, M. Riemer, R. Schubert, U. Tiede, and W. Lierse, "A 3D anatomical atlas based on a volume model," IEEE Comput. Graphics Appl, vol. 12, pp. 72-78, 1992.
2. J. C. Gee, M. Reivich, and R. Bajcsy, "Elastically deforming an atlas to match anatomical brain images," J. Comput. Assist. Tomogr., vol. 17, pp. 225-236, 1993.
3. A. Pommert, R. Schubert, M. Riemer, T. Schiemann, U. Tiede, and K. H. Höhne, "Symbolic modeling of human anatomy for visualization and simulation," IEEE: Visualization in Biomedical Computing, vol. 2359, pp. 412-423, 1994.
4. R. Kikinis, M. E. Shenton, D. V. Iosifescu, R. W. McCarley, P. Saiviroonporn, H. H. Hokama, A. Robatino, D. Metcalf, C. G.Wible, C. Portas, R. Donnino, and F. Jolesz, "A digital brain atlas for surgical planning, modeldriven segmentation, and teaching," IEEE Trans. on Visualization and Comp. Graphics, vol. 2, pp. 232-241, 1996.
5. A. W. Toga, Brain Warping: Academic Press, 1998.
6. P. M. Thompson and A. W. Toga, "A framework for computational anatomy," Comput. Vis. Sci., vol. 5, pp. 13-34, 2002.
7. S. Joshi, B. Davis, M. Jomier, and G. Gerig, "Unbiased diffeomorphic atlas construction for computational anatomy," Neuroimage, vol. 23, pp. S151-160, 2004.
8. U. Grenander, General Pattern Theory: Oxford Univ. Press., 1994.
9. C. H. Chesnut, 3rd, S. Majumdar, D. C. Newitt, A. Shields, J. Van Pelt, E. Laschansky, M. Azria, A. Kriegman, M. Olson, E. F. Eriksen, and L. Mindeholm, "Effects of salmon calcitonin on trabecular microarchitecture as determined by magnetic resonance imaging: results from the QUEST study," JBone Miner Res, vol. 20, pp. 15481561, 2005.
10. C. Chappard, B. Brunet-Imbault, G. Lemineur, B. Giraudeau, A. Basillais, R. Harba, and C. L. Benhamou, "Anisotropy changes in post-menopausal osteoporosis: characterization by a new index applied to trabecular bone radiographic images," Osteoporos Int, vol. 16, pp. 1193-1202, 2005.
11. Y. M. Lai, L. Qin, H. Y. Yeung, K. K. Lee, and K. M. Chan, "Regional differences in trabecular BMD and microarchitecture of weight-bearing bone under habitual gait loading-a pQCT and microCT study in human cadavers," Bone, vol. 37, pp. 274-282, 2005.
12. B. R. Gomberg, P. K. Saha, and F. W. Wehrli, "Topology-based orientation analysis of trabecular bone networks," Medical Physics, vol. 30, pp. 158-168, 2003.
13. E. A. Messent, J. C. Buckland-Wright, and G. M. Blake, "Fractal analysis of trabecular bone in knee osteoarthritis (OA) is a more sensitive marker of disease status than bone mineral density (BMD)," Calcif Tissue Int, vol. 76, pp. 419-25,2005.
14. S. Majumdar, "Magnetic resonance imaging of trabecular bone structure," Topics in Magnetic Resonance Imaging, vol. 13, pp. 323-334, 2002.
15. F. W. Wehrli, P. K. Saha, B. R. Gomberg, H. K. Song, P. J. Snyder, M. Benito, A. Wright, and R. Weening, "Role of magnetic resonance for assessing structure and function of trabecular bone," Topics in Magnetic Resonance Imaging, vol. 13, pp. 335-356, 2002.
16. P. K. Saha and B. B. Chaudhuri, "3D digital topology under binary transformation with applications," Computer Vision and Image Understanding, vol. 63, pp. 418-429, 1996.
17. P. K. Saha, B. R. Gomberg, and F. W. Wehrli, "Three-dimensional digital topological characterization of cancellous bone architecture," International Journal of Imaging Systems and Technology, vol. 11, pp. 81-90,2000.
18. T. F. Cootes, A. Hill, C. J. Taylor, and J. Haslam, "The use of active shape models for locating structures in medical images," Image and Vision Computing, vol. 12, pp. 355-366, 1994.
19. T. F. Cootes, C. J. Taylor, D. Cooper, and J. Graham, "Active shape models - their training and application," Computer Vision and Image Understanding, vol. 61, pp. 38-59, 1995.
20. F. L. Bookstein, Morphometric Tools for Landmark Data. New York: Cambridge University Press, 1991.
21. S. C. Joshi, M. I. Miller, G. E. Christensen, A. Banerjee, T. A. Coogan, and U. Grenander, "Hierarchical brain mapping via a generalized Dirichlet solution for mapping brain manifolds," presented at SPIE: Vision Geometry IV, 1995.
22. H. Zhang, N. E. Walker, S. C. Mitchell, M. T. Thomas, A. Wähle, T. D. Scholz, and M. Sonka, "Analysis of fourdimensional cardiac ventricular magnetic resonance images using statistical models of ventricular shape and cardiac motion," presented at SPIE: Medical Imaging, San Diego, CA, 2006.
23. H. Zhang, M. T. Thomas, N. E. Walker, A. H. Stolpen, A. Wähle, T. D. Scholz, and M. Sonka, "Four-diemnsional functional analysis of left and right ventricles using MR images and active appearance models," presented at SPIE: Medical Imaging, San Diego, CA, 2007.
24. C. Goodall, "Procrustes methods in the statistical analysis of shapes," J. Roy Statist. Soc. B., vol. 53, pp. 285-339, 1991.
25. A. Coimbra, P. K. Saha, G. Wesolowski, Y. Tymofyeyev, J. Szumiloski, R. Hargreaves, D. S. Williams, and L. T. Duong, "Changes in trabecular bone microstructure are sensitive to disease progression and alendronate treatment in the rabbit anterior cruciate ligament transection model of osteoarthritis, " presented at American Society for Bone and Mineral Research, Philadelphia, PA, 2006.
26. "The Math Works, Inc," in http://www.mathworks.com.
27. A. Rosenfeld, "Connectivity in digital pictures," Journal of the Association for Computing Machinery, vol. 17, pp. 146-160, 1970.
28. T. Y. Kong and A. Rosenfeld, "Digital topology: introduction and survey," Computer Vision, Graphics, and Image Processing, vol. 48, pp. 357-393, 1989.
29. J. Serez., Image Analysis and Mathematical Morphology. London: Academic Press, 1982.
30. L. Piegl and W. Tiller, The NURBS Book, 2nd ed. New York, NY: Springer-Verlag, 1997.
31. F. W. Wehrli, B. R. Gomberg, P. K. Saha, H. K. Song, S. N. Hwang, and P. J. Snyder, "Digital topological analysis of in vivo magnetic resonance microimages of trabecular bone reveals structural implications of osteoporosis," Journal of Bone Mineral Research, vol. 16, pp. 1520-31, 2001.
32. B. G. Gomberg, P. K. Saha, H. K. Song, S. N. Hwang, and F. W. Wehrli, "Topological analysis of trabecular bone MR images," IEEE Transactions on Medical Imaging, vol. 19, pp. 166-174, 2000.
33. P. K. Saha, B. B. Chaudhuri, and D. D. Majumder, "A new shape preserving parallel thinning algorithm for 3D digital images," Pattern Recognition, vol. 30, pp. 1939-1955, 1997.
34. K. Palágyi and A. Kuba, "A parallel 3D 12-subiteration thinning algorithm," Graphical Models and Image Processing, vol. 61, pp. 199-221, 1999.