-
1
-
-
0034887133
-
The crystal structure of MarR, a regulator of multiple antibiotic resistance, at 2.3 Å resolution
-
Alekshun M.N., Levy S.B., Mealy T.R., Seaton B.A., and Head J.F. The crystal structure of MarR, a regulator of multiple antibiotic resistance, at 2.3 Å resolution. Nat. Struct. Biol. 8 (2001) 710-714
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 710-714
-
-
Alekshun, M.N.1
Levy, S.B.2
Mealy, T.R.3
Seaton, B.A.4
Head, J.F.5
-
2
-
-
0032994431
-
Regulation of the OxyR transcription factor by hydrogen peroxide and the cellular thiol-disulfide status
-
Aslund F., Zheng M., Beckwith J., and Storz G. Regulation of the OxyR transcription factor by hydrogen peroxide and the cellular thiol-disulfide status. Proc. Natl. Acad. Sci. USA 96 (1999) 6161-6165
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6161-6165
-
-
Aslund, F.1
Zheng, M.2
Beckwith, J.3
Storz, G.4
-
3
-
-
0021158356
-
The role of oxygen and its derivatives in microbial pathogenesis and host defense
-
Beaman L., and Beaman B.L. The role of oxygen and its derivatives in microbial pathogenesis and host defense. Annu. Rev. Microbiol. 38 (1984) 27-48
-
(1984)
Annu. Rev. Microbiol.
, vol.38
, pp. 27-48
-
-
Beaman, L.1
Beaman, B.L.2
-
4
-
-
33745267050
-
The crystal structure of the transcriptional regulator HucR from Deinococcus radiodurans reveals a repressor preconfigured for DNA binding
-
Bordelon T., Wilkinson S.P., Grove A., and Newcomer M.E. The crystal structure of the transcriptional regulator HucR from Deinococcus radiodurans reveals a repressor preconfigured for DNA binding. J. Mol. Biol. 360 (2006) 168-177
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 168-177
-
-
Bordelon, T.1
Wilkinson, S.P.2
Grove, A.3
Newcomer, M.E.4
-
5
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
6
-
-
33644836708
-
Mechanisms of evasion of neutrophil killing by Anaplasma phagocytophilum
-
Carlyon J.A., and Fikrig E. Mechanisms of evasion of neutrophil killing by Anaplasma phagocytophilum. Curr. Opin. Hematol. 13 (2006) 28-33
-
(2006)
Curr. Opin. Hematol.
, vol.13
, pp. 28-33
-
-
Carlyon, J.A.1
Fikrig, E.2
-
7
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
CCP4 (Collaborative Computational Project, Number 4)
-
CCP4 (Collaborative Computational Project, Number 4). The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50 (1994) 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
8
-
-
33646575616
-
Oxidative stress and diabetes-associated complications
-
Ceriello A. Oxidative stress and diabetes-associated complications. Endocr. Pract. 12 Suppl 1 (2006) 60-62
-
(2006)
Endocr. Pract.
, vol.12
, Issue.SUPPL. 1
, pp. 60-62
-
-
Ceriello, A.1
-
9
-
-
33750230997
-
An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus
-
Chen P.R., Bae T., Williams W.A., Duguid E.M., Rice P.A., Schneewind O., and He C. An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus. Nat. Chem. Biol. 2 (2006) 591-595
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 591-595
-
-
Chen, P.R.1
Bae, T.2
Williams, W.A.3
Duguid, E.M.4
Rice, P.A.5
Schneewind, O.6
He, C.7
-
10
-
-
0035815274
-
Structural basis of the redox switch in the OxyR transcription factor
-
Choi H., Kim S., Mukhopadhyay P., Cho S., Woo J., Storz G., and Ryu S. Structural basis of the redox switch in the OxyR transcription factor. Cell 105 (2001) 103-113
-
(2001)
Cell
, vol.105
, pp. 103-113
-
-
Choi, H.1
Kim, S.2
Mukhopadhyay, P.3
Cho, S.4
Woo, J.5
Storz, G.6
Ryu, S.7
-
11
-
-
0342333739
-
OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins
-
Christman M.F., Storz G., and Ames B.N. OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins. Proc. Natl. Acad. Sci. USA 86 (1989) 3484-3488
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 3484-3488
-
-
Christman, M.F.1
Storz, G.2
Ames, B.N.3
-
13
-
-
36248931741
-
-
DeLano, W.L. (2002). The PyMOL Molecular Graphics System (http://www.pymol.org).
-
-
-
-
14
-
-
33645858540
-
Regulation of virulence by members of the MarR/SlyA family
-
Ellison D.W., and Miller V.L. Regulation of virulence by members of the MarR/SlyA family. Curr. Opin. Microbiol. 9 (2006) 153-159
-
(2006)
Curr. Opin. Microbiol.
, vol.9
, pp. 153-159
-
-
Ellison, D.W.1
Miller, V.L.2
-
15
-
-
0037076330
-
The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative
-
Fuangthong M., and Helmann J.D. The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative. Proc. Natl. Acad. Sci. USA 99 (2002) 6690-6695
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6690-6695
-
-
Fuangthong, M.1
Helmann, J.D.2
-
16
-
-
0034971954
-
OhrR is a repressor of ohrA, a key organic hydroperoxide resistance determinant in Bacillus subtilis
-
Fuangthong M., Atichartpongkul S., Mongkolsuk S., and Helmann J.D. OhrR is a repressor of ohrA, a key organic hydroperoxide resistance determinant in Bacillus subtilis. J. Bacteriol. 183 (2001) 4134-4141
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4134-4141
-
-
Fuangthong, M.1
Atichartpongkul, S.2
Mongkolsuk, S.3
Helmann, J.D.4
-
17
-
-
33747828219
-
Role of oxidative stress in development of cardiovascular complications in diabetes mellitus
-
Haidara M.A., Yassin H.Z., Rateb M., Ammar H., and Zorkani M.A. Role of oxidative stress in development of cardiovascular complications in diabetes mellitus. Curr. Vasc. Pharmacol. 4 (2006) 215-227
-
(2006)
Curr. Vasc. Pharmacol.
, vol.4
, pp. 215-227
-
-
Haidara, M.A.1
Yassin, H.Z.2
Rateb, M.3
Ammar, H.4
Zorkani, M.A.5
-
18
-
-
33745013111
-
Oxidative stress and neurodegeneration: where are we now?
-
Halliwell B. Oxidative stress and neurodegeneration: where are we now?. J. Neurochem. 97 (2006) 1634-1658
-
(2006)
J. Neurochem.
, vol.97
, pp. 1634-1658
-
-
Halliwell, B.1
-
19
-
-
0037215627
-
The global transcriptional response of Bacillus subtilis to peroxide stress is coordinated by three transcription factors
-
Helmann J.D., Wu M.F., Gaballa A., Kobel P.A., Morshedi M.M., Fawcett P., and Paddon C. The global transcriptional response of Bacillus subtilis to peroxide stress is coordinated by three transcription factors. J. Bacteriol. 185 (2003) 243-253
-
(2003)
J. Bacteriol.
, vol.185
, pp. 243-253
-
-
Helmann, J.D.1
Wu, M.F.2
Gaballa, A.3
Kobel, P.A.4
Morshedi, M.M.5
Fawcett, P.6
Paddon, C.7
-
20
-
-
0032079338
-
The redox-regulated SoxR protein acts from a single DNA site as a repressor and an allosteric activator
-
Hidalgo E., Leautaud V., and Demple B. The redox-regulated SoxR protein acts from a single DNA site as a repressor and an allosteric activator. EMBO J. 17 (1998) 2629-2636
-
(1998)
EMBO J.
, vol.17
, pp. 2629-2636
-
-
Hidalgo, E.1
Leautaud, V.2
Demple, B.3
-
21
-
-
25844514282
-
Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family
-
Hong M., Fuangthong M., Helmann J.D., and Brennan R.G. Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family. Mol. Cell 20 (2005) 131-141
-
(2005)
Mol. Cell
, vol.20
, pp. 131-141
-
-
Hong, M.1
Fuangthong, M.2
Helmann, J.D.3
Brennan, R.G.4
-
22
-
-
15544372331
-
Rat/MgrA, a regulator of autolysis, is a regulator of virulence genes in Staphylococcus aureus
-
Ingavale S., van Wamel W., Luong T.T., Lee C.Y., and Cheung A.L. Rat/MgrA, a regulator of autolysis, is a regulator of virulence genes in Staphylococcus aureus. Infect. Immun. 73 (2005) 1423-1431
-
(2005)
Infect. Immun.
, vol.73
, pp. 1423-1431
-
-
Ingavale, S.1
van Wamel, W.2
Luong, T.T.3
Lee, C.Y.4
Cheung, A.L.5
-
23
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (1991) 110-119
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
24
-
-
17644426975
-
Novel roles of ohrR-ohr in Xanthomonas sensing, metabolism, and physiological adaptive response to lipid hydroperoxide
-
Klomsiri C., Panmanee W., Dharmsthiti S., Vattanaviboon P., and Mongkolsuk S. Novel roles of ohrR-ohr in Xanthomonas sensing, metabolism, and physiological adaptive response to lipid hydroperoxide. J. Bacteriol. 187 (2005) 3277-3281
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3277-3281
-
-
Klomsiri, C.1
Panmanee, W.2
Dharmsthiti, S.3
Vattanaviboon, P.4
Mongkolsuk, S.5
-
25
-
-
0028180278
-
pBBR1MCS: a broad-host-range cloning vector
-
Kovach M.E., Phillips R.W., Elzer P.H., Roop II R.M., and Peterson K.M. pBBR1MCS: a broad-host-range cloning vector. Biotechniques 16 (1994) 800-802
-
(1994)
Biotechniques
, vol.16
, pp. 800-802
-
-
Kovach, M.E.1
Phillips, R.W.2
Elzer, P.H.3
Roop II, R.M.4
Peterson, K.M.5
-
26
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski R.A., Moss D.S., and Thornton J.M. Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231 (1993) 1049-1067
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
27
-
-
16544369973
-
Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path
-
Lee C., Lee S.M., Mukhopadhyay P., Kim S.J., Lee S.C., Ahn W.S., Yu M.H., Storz G., and Ryu S.E. Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path. Nat. Struct. Mol. Biol. 11 (2004) 1179-1185
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1179-1185
-
-
Lee, C.1
Lee, S.M.2
Mukhopadhyay, P.3
Kim, S.J.4
Lee, S.C.5
Ahn, W.S.6
Yu, M.H.7
Storz, G.8
Ryu, S.E.9
-
28
-
-
34547399134
-
A complex thiolate switch regulates the Bacillus subtilis organic peroxide sensor OhrR
-
Lee J.W., Soonsanga S., and Helmann J.D. A complex thiolate switch regulates the Bacillus subtilis organic peroxide sensor OhrR. Proc. Natl. Acad. Sci. USA 104 (2007) 8743-8748
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 8743-8748
-
-
Lee, J.W.1
Soonsanga, S.2
Helmann, J.D.3
-
29
-
-
0037047395
-
Crystal structure of the MexR repressor of the mexRAB-oprM multidrug efflux operon of Pseudomonas aeruginosa
-
Lim D., Poole K., and Strynadka N.C. Crystal structure of the MexR repressor of the mexRAB-oprM multidrug efflux operon of Pseudomonas aeruginosa. J. Biol. Chem. 277 (2002) 29253-29259
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29253-29259
-
-
Lim, D.1
Poole, K.2
Strynadka, N.C.3
-
30
-
-
0035810990
-
Crystal structure of the SarR protein from Staphylococcus aureus
-
Liu Y., Manna A., Li R., Martin W.E., Murphy R.C., Cheung A.L., and Zhang G. Crystal structure of the SarR protein from Staphylococcus aureus. Proc. Natl. Acad. Sci. USA 98 (2001) 6877-6882
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6877-6882
-
-
Liu, Y.1
Manna, A.2
Li, R.3
Martin, W.E.4
Murphy, R.C.5
Cheung, A.L.6
Zhang, G.7
-
32
-
-
0036047508
-
Regulation of inducible peroxide stress responses
-
Mongkolsuk S., and Helmann J.D. Regulation of inducible peroxide stress responses. Mol. Microbiol. 45 (2002) 9-15
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 9-15
-
-
Mongkolsuk, S.1
Helmann, J.D.2
-
33
-
-
0030974196
-
Characterization of transcription organization and analysis of unique expression patterns of an alkyl hydroperoxide reductase C gene (ahpC) and the peroxide regulator operon ahpF-oxyR-orfX from Xanthomonas campestris pv. phaseoli
-
Mongkolsuk S., Loprasert S., Whangsuk W., Fuangthong M., and Atichartpongkun S. Characterization of transcription organization and analysis of unique expression patterns of an alkyl hydroperoxide reductase C gene (ahpC) and the peroxide regulator operon ahpF-oxyR-orfX from Xanthomonas campestris pv. phaseoli. J. Bacteriol. 179 (1997) 3950-3955
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3950-3955
-
-
Mongkolsuk, S.1
Loprasert, S.2
Whangsuk, W.3
Fuangthong, M.4
Atichartpongkun, S.5
-
34
-
-
0036096988
-
The repressor for an organic peroxide-inducible operon is uniquely regulated at multiple levels
-
Mongkolsuk S., Panmanee W., Atichartpongkul S., Vattanaviboon P., Whangsuk W., Fuangthong M., Eiamphungporn W., Sukchawalit R., and Utamapongchai S. The repressor for an organic peroxide-inducible operon is uniquely regulated at multiple levels. Mol. Microbiol. 44 (2002) 793-802
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 793-802
-
-
Mongkolsuk, S.1
Panmanee, W.2
Atichartpongkul, S.3
Vattanaviboon, P.4
Whangsuk, W.5
Fuangthong, M.6
Eiamphungporn, W.7
Sukchawalit, R.8
Utamapongchai, S.9
-
35
-
-
34548500350
-
Dual Role of OhrR as a Repressor and an Activator in Response to Organic Hydroperoxides in Streptomyces coelicolor
-
Oh S.Y., Shin J.H., and Roe J.H. Dual Role of OhrR as a Repressor and an Activator in Response to Organic Hydroperoxides in Streptomyces coelicolor. J. Bacteriol. 189 (2007) 6284-6292
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6284-6292
-
-
Oh, S.Y.1
Shin, J.H.2
Roe, J.H.3
-
37
-
-
0036032183
-
OhrR, a transcription repressor that senses and responds to changes in organic peroxide levels in Xanthomonas campestris pv. phaseoli
-
Panmanee W., Vattanaviboon P., Eiamphungporn W., Whangsuk W., Sallabhan R., and Mongkolsuk S. OhrR, a transcription repressor that senses and responds to changes in organic peroxide levels in Xanthomonas campestris pv. phaseoli. Mol. Microbiol. 45 (2002) 1647-1654
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 1647-1654
-
-
Panmanee, W.1
Vattanaviboon, P.2
Eiamphungporn, W.3
Whangsuk, W.4
Sallabhan, R.5
Mongkolsuk, S.6
-
38
-
-
32444439989
-
Novel organic hydroperoxide-sensing and responding mechanisms for OhrR, a major bacterial sensor and regulator of organic hydroperoxide stress
-
Panmanee W., Vattanaviboon P., Poole L.B., and Mongkolsuk S. Novel organic hydroperoxide-sensing and responding mechanisms for OhrR, a major bacterial sensor and regulator of organic hydroperoxide stress. J. Bacteriol. 188 (2006) 1389-1395
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1389-1395
-
-
Panmanee, W.1
Vattanaviboon, P.2
Poole, L.B.3
Mongkolsuk, S.4
-
39
-
-
0033213239
-
The finer things in X-ray diffraction data collection
-
Pflugrath J.W. The finer things in X-ray diffraction data collection. Acta Crystallogr. D Biol. Crystallogr. 55 (1999) 1718-1725
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 1718-1725
-
-
Pflugrath, J.W.1
-
40
-
-
28844441670
-
Reactive oxygen species as signaling molecules in cardiovascular differentiation of embryonic stem cells and tumor-induced angiogenesis
-
Sauer H., and Wartenberg M. Reactive oxygen species as signaling molecules in cardiovascular differentiation of embryonic stem cells and tumor-induced angiogenesis. Antioxid. Redox Signal. 7 (2005) 1423-1434
-
(2005)
Antioxid. Redox Signal.
, vol.7
, pp. 1423-1434
-
-
Sauer, H.1
Wartenberg, M.2
-
41
-
-
0029025536
-
Characterization of MarR, the repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli
-
Seoane A.S., and Levy S.B. Characterization of MarR, the repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli. J. Bacteriol. 177 (1995) 3414-3419
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3414-3419
-
-
Seoane, A.S.1
Levy, S.B.2
-
42
-
-
34948878088
-
Mutational analysis of active site residues essential for sensing of organic hydroperoxides by Bacillus subtilis OhrR
-
Soonsanga S., Fuangthong M., and Helmann J.D. Mutational analysis of active site residues essential for sensing of organic hydroperoxides by Bacillus subtilis OhrR. J. Bacteriol. 189 (2007) 7069-7076
-
(2007)
J. Bacteriol.
, vol.189
, pp. 7069-7076
-
-
Soonsanga, S.1
Fuangthong, M.2
Helmann, J.D.3
-
43
-
-
17244367828
-
Reactive oxygen species in tumor progression
-
Storz P. Reactive oxygen species in tumor progression. Front. Biosci. 10 (2005) 1881-1896
-
(2005)
Front. Biosci.
, vol.10
, pp. 1881-1896
-
-
Storz, P.1
-
45
-
-
0347383761
-
SOLVE and RESOLVE: automated structure solution and density modification
-
Terwilliger T.C. SOLVE and RESOLVE: automated structure solution and density modification. Methods Enzymol. 374 (2003) 22-37
-
(2003)
Methods Enzymol.
, vol.374
, pp. 22-37
-
-
Terwilliger, T.C.1
-
46
-
-
34147210988
-
Hydrogen peroxide sensing and signaling
-
Veal E.A., Day A.M., and Morgan B.A. Hydrogen peroxide sensing and signaling. Mol. Cell 26 (2007) 1-14
-
(2007)
Mol. Cell
, vol.26
, pp. 1-14
-
-
Veal, E.A.1
Day, A.M.2
Morgan, B.A.3
-
47
-
-
0038165477
-
Crystal structure of Enterococcus faecalis SlyA-like transcriptional factor
-
Wu R.Y., Zhang R.G., Zagnitko O., Dementieva I., Maltzev N., Watson J.D., Laskowski R., Gornicki P., and Joachimiak A. Crystal structure of Enterococcus faecalis SlyA-like transcriptional factor. J. Biol. Chem. 278 (2003) 20240-20244
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 20240-20244
-
-
Wu, R.Y.1
Zhang, R.G.2
Zagnitko, O.3
Dementieva, I.4
Maltzev, N.5
Watson, J.D.6
Laskowski, R.7
Gornicki, P.8
Joachimiak, A.9
-
48
-
-
0032513362
-
Activation of the OxyR transcription factor by reversible disulfide bond formation
-
Zheng M., Aslund F., and Storz G. Activation of the OxyR transcription factor by reversible disulfide bond formation. Science 279 (1998) 1718-1721
-
(1998)
Science
, vol.279
, pp. 1718-1721
-
-
Zheng, M.1
Aslund, F.2
Storz, G.3
|