메뉴 건너뛰기




Volumn 26, Issue 11, 2007, Pages 2413-2419

Serial analysis of gene expression reveals identifiable patterns in transcriptome profiles of Palaemonetes pugio exposed to three common environmental stressors

Author keywords

Biomarkers; Grass shrimp; Quantitative polymerase chain reaction; Serial analysis of gene expression; Toxicogenomics

Indexed keywords

BIODIVERSITY; BIOMARKERS; CLUSTER ANALYSIS; STATISTICAL METHODS;

EID: 36148991108     PISSN: 07307268     EISSN: None     Source Type: Journal    
DOI: 10.1897/07-158R.1     Document Type: Article
Times cited : (12)

References (29)
  • 1
    • 15944380052 scopus 로고    scopus 로고
    • Ecotoxicogenomics: Linkages between exposure and effects in assessing risks of aquatic contaminants to fish
    • Miracle AL, Ankley GT. 2005. Ecotoxicogenomics: Linkages between exposure and effects in assessing risks of aquatic contaminants to fish. Reprod Toxicol 19:321-326.
    • (2005) Reprod Toxicol , vol.19 , pp. 321-326
    • Miracle, A.L.1    Ankley, G.T.2
  • 2
    • 1542375217 scopus 로고    scopus 로고
    • Ecotoxicogenomics: The challenge of integrating genomics into aquatic and terrestrial ecotoxicology
    • Snape JR, Maund SJ, Pickford DB, Hutchinson TH. 2004. Ecotoxicogenomics: The challenge of integrating genomics into aquatic and terrestrial ecotoxicology. Aquat Toxicol 67:143-154.
    • (2004) Aquat Toxicol , vol.67 , pp. 143-154
    • Snape, J.R.1    Maund, S.J.2    Pickford, D.B.3    Hutchinson, T.H.4
  • 3
    • 22144490466 scopus 로고    scopus 로고
    • Development and application of a brain-specific cDNA microarray for effect evaluation of neuroactive pharmaceuticals in zebrafish (Danio rerio)
    • van der Ven K, De Wit M, Keil D, Moens L, Van Leemput K, Naudts B, De Coen W. 2005. Development and application of a brain-specific cDNA microarray for effect evaluation of neuroactive pharmaceuticals in zebrafish (Danio rerio). Comp Biochem Physiol B 141:408-417.
    • (2005) Comp Biochem Physiol B , vol.141 , pp. 408-417
    • van der Ven, K.1    De Wit, M.2    Keil, D.3    Moens, L.4    Van Leemput, K.5    Naudts, B.6    De Coen, W.7
  • 5
    • 24944481659 scopus 로고    scopus 로고
    • Expression profiling of five different xenobiotics using a Caenorhabditis elegans whole genome microarray
    • Reichert K, Menzel R. 2005. Expression profiling of five different xenobiotics using a Caenorhabditis elegans whole genome microarray. Chemosphere 61:229-37.
    • (2005) Chemosphere , vol.61 , pp. 229-237
    • Reichert, K.1    Menzel, R.2
  • 6
    • 0344874075 scopus 로고    scopus 로고
    • The path from molecular indicators of exposure to describing dynamic biological systems in an aquatic organism: Microarrays and the fathead minnow
    • Miracle AL, Toth GP, Lattier DL. 2003. The path from molecular indicators of exposure to describing dynamic biological systems in an aquatic organism: Microarrays and the fathead minnow. Ecotoxicology 12:457-62.
    • (2003) Ecotoxicology , vol.12 , pp. 457-462
    • Miracle, A.L.1    Toth, G.P.2    Lattier, D.L.3
  • 7
    • 1542503715 scopus 로고    scopus 로고
    • Differential gene expression analysis in fish exposed to endocrine disrupting compounds
    • Larkin P, Knoebl I, Denslow ND. 2003. Differential gene expression analysis in fish exposed to endocrine disrupting compounds. Comp Biochem Physiol B 136:149-161.
    • (2003) Comp Biochem Physiol B , vol.136 , pp. 149-161
    • Larkin, P.1    Knoebl, I.2    Denslow, N.D.3
  • 8
    • 0042433120 scopus 로고    scopus 로고
    • A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus)
    • Williams TD, Gensberg K, Minchin SD, Chipman JK. 2003. A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Aquat Toxicol 65:141-57.
    • (2003) Aquat Toxicol , vol.65 , pp. 141-157
    • Williams, T.D.1    Gensberg, K.2    Minchin, S.D.3    Chipman, J.K.4
  • 9
    • 0036897967 scopus 로고    scopus 로고
    • Application of genomics and proteomics for study of the integrated response to zinc exposure in a nonmodel fish species, the rainbow trout
    • Hogstrand C, Balesaria S, Glover CN. 2002. Application of genomics and proteomics for study of the integrated response to zinc exposure in a nonmodel fish species, the rainbow trout. Comp Biochem Physiol B 133:523-35.
    • (2002) Comp Biochem Physiol B , vol.133 , pp. 523-535
    • Hogstrand, C.1    Balesaria, S.2    Glover, C.N.3
  • 10
    • 27844505178 scopus 로고    scopus 로고
    • Molecular characterization and expression analysis of vitellogenin in the marine crab Portunus trituberculatus
    • Yang F, Xu H-T, Dai Z-M, Yang W-J. 2005. Molecular characterization and expression analysis of vitellogenin in the marine crab Portunus trituberculatus: Comp Biochem Physiol B 142: 456-464.
    • (2005) Comp Biochem Physiol B , vol.142 , pp. 456-464
    • Yang, F.1    Xu, H.-T.2    Dai, Z.-M.3    Yang, W.-J.4
  • 11
    • 0346305961 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in shrimp (Penaeus stylirostris) infected with White spot syndrome virus by cDNA microarrays
    • Dhar AK, Dettori A, Roux MM, Klimpel KR, Read B. 2003. Identification of differentially expressed genes in shrimp (Penaeus stylirostris) infected with White spot syndrome virus by cDNA microarrays. Arch Virol 148:2381-2396.
    • (2003) Arch Virol , vol.148 , pp. 2381-2396
    • Dhar, A.K.1    Dettori, A.2    Roux, M.M.3    Klimpel, K.R.4    Read, B.5
  • 12
    • 36148988677 scopus 로고    scopus 로고
    • Scott GI, Fulton MH, Crosby MC, Key PB, Daugomah JW, Waldren T, Strozier ED, Louden CJ, Chandler GT, Bidleman TF, Jackson KL, Hampton TW, Huffman T, Shulz A, Bradford M. 1992. Agricultural nonpoint runoff effects on estuarine organisms: Correlating laboratory and field bioassays and ecotoxicological biomonitoring. EPA/600/R-94/004. U.S. Environmental Protection Agency, Gulf Breeze, FL.
    • Scott GI, Fulton MH, Crosby MC, Key PB, Daugomah JW, Waldren T, Strozier ED, Louden CJ, Chandler GT, Bidleman TF, Jackson KL, Hampton TW, Huffman T, Shulz A, Bradford M. 1992. Agricultural nonpoint runoff effects on estuarine organisms: Correlating laboratory and field bioassays and ecotoxicological biomonitoring. EPA/600/R-94/004. U.S. Environmental Protection Agency, Gulf Breeze, FL.
  • 13
    • 0001333925 scopus 로고
    • The role of grass shrimp, Palaemonetes pugio, in a tidal marsh ecosystem
    • Welsh BL. 1975. The role of grass shrimp, Palaemonetes pugio, in a tidal marsh ecosystem. Ecology 56:513-530.
    • (1975) Ecology , vol.56 , pp. 513-530
    • Welsh, B.L.1
  • 16
    • 0037165244 scopus 로고    scopus 로고
    • Novel estrogen- and tamoxifen-induced genes identified by SAGE (Serial Analysis of Gene Expression)
    • Seth P, Krop I, Porter D, Polyak K. 2002. Novel estrogen- and tamoxifen-induced genes identified by SAGE (Serial Analysis of Gene Expression). Oncogene 21:836-843.
    • (2002) Oncogene , vol.21 , pp. 836-843
    • Seth, P.1    Krop, I.2    Porter, D.3    Polyak, K.4
  • 17
    • 0036158894 scopus 로고    scopus 로고
    • Gene transcript profiling in aging research
    • Welle S. 2002. Gene transcript profiling in aging research. Experimental Gerontology 37:583-590.
    • (2002) Experimental Gerontology , vol.37 , pp. 583-590
    • Welle, S.1
  • 19
    • 33744943777 scopus 로고    scopus 로고
    • Cathepsin B and glutathione peroxidase show transcriptional responses in the grass shrimp, Palaemonetes pugio, following exposure to three xenobiotics
    • Griffitt RJ, Chandler GT, Greig TW, Quattro JM. 2006. Cathepsin B and glutathione peroxidase show transcriptional responses in the grass shrimp, Palaemonetes pugio, following exposure to three xenobiotics. Environ Sci Technol 40:3640-3645.
    • (2006) Environ Sci Technol , vol.40 , pp. 3640-3645
    • Griffitt, R.J.1    Chandler, G.T.2    Greig, T.W.3    Quattro, J.M.4
  • 20
    • 36148965059 scopus 로고    scopus 로고
    • American Society for Testing and Materials. 2002. Standard guide for conducting acute toxicity tests on test materials with fishes, macroinvertebrates, and amphibians. E729-96. In Annual Book of ASTM Standards, 11.06. Philadelphia, PA, pp 1-22.
    • American Society for Testing and Materials. 2002. Standard guide for conducting acute toxicity tests on test materials with fishes, macroinvertebrates, and amphibians. E729-96. In Annual Book of ASTM Standards, Vol 11.06. Philadelphia, PA, pp 1-22.
  • 21
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM. 1997. The significance of digital gene expression profiles. Genome Res 7:986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 22
    • 0037440150 scopus 로고    scopus 로고
    • IDEG6: A web tool for detection of differentially expressed genes in multiple tag sampling experiments
    • Romualdi C, Bortoluzzi S, D'Alessi F, Danieli GA. 2003. IDEG6: A web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiol Genomics 12:159-162.
    • (2003) Physiol Genomics , vol.12 , pp. 159-162
    • Romualdi, C.1    Bortoluzzi, S.2    D'Alessi, F.3    Danieli, G.A.4
  • 25
    • 0028323698 scopus 로고
    • Cadmium in the aquatic environment: A review of ecological, physiological, and toxicological effects on biota
    • Wright DA, Welbourn PM. 1994. Cadmium in the aquatic environment: A review of ecological, physiological, and toxicological effects on biota. Environ Rev 2:187-214.
    • (1994) Environ Rev , vol.2 , pp. 187-214
    • Wright, D.A.1    Welbourn, P.M.2
  • 26
    • 29344472907 scopus 로고
    • Action of phenylpyrazole insecticides at the GABA-gated chloride channel
    • Cole LM, Nicholson RA, Casida JA. 1993. Action of phenylpyrazole insecticides at the GABA-gated chloride channel. Pestic Biochem Physiol 46:47-54.
    • (1993) Pestic Biochem Physiol , vol.46 , pp. 47-54
    • Cole, L.M.1    Nicholson, R.A.2    Casida, J.A.3
  • 27
    • 0038204621 scopus 로고    scopus 로고
    • Inhibition of molting by cadmium in the crab Chasmagnathus granulata (Decapoda Brachyura)
    • Rodriguez Moreno PA, Medesani DA, Rodriguez EM. 2003. Inhibition of molting by cadmium in the crab Chasmagnathus granulata (Decapoda Brachyura). Aquat Toxicol 64:155-164.
    • (2003) Aquat Toxicol , vol.64 , pp. 155-164
    • Rodriguez Moreno, P.A.1    Medesani, D.A.2    Rodriguez, E.M.3
  • 28
    • 0034287708 scopus 로고    scopus 로고
    • Effects of cadmium on gonadal and somatic growth of juvenile females of the estuarine crab Chasmagnathus granulata (Brachyura:Grapsidae)
    • Kogan M, Lopez LS, Greco SL, Romano LA, Rodriguez EM. 2000. Effects of cadmium on gonadal and somatic growth of juvenile females of the estuarine crab Chasmagnathus granulata (Brachyura:Grapsidae). Tool Stud 34:344-350.
    • (2000) Tool Stud , vol.34 , pp. 344-350
    • Kogan, M.1    Lopez, L.S.2    Greco, S.L.3    Romano, L.A.4    Rodriguez, E.M.5
  • 29
    • 2942541466 scopus 로고    scopus 로고
    • Interactive effects of UV, benzo[a]pyrene, and cadmium on DNA damage and repair in embryos of the grass shrimp Palaemonetes pugio
    • Hook SL, Lee RF. 2004. Interactive effects of UV, benzo[a]pyrene, and cadmium on DNA damage and repair in embryos of the grass shrimp Palaemonetes pugio. Mar Environ Res 58:735-739.
    • (2004) Mar Environ Res , vol.58 , pp. 735-739
    • Hook, S.L.1    Lee, R.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.