Quantification of carbon flow from stable isotope fractionation in rice field soils with different organic matter content

Organic Geochemistry

Volumn 38, Issue 12, 2007, Pages 2058-2069

  Penning, Holger ^a,b   Conrad, Ralf ^a  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^b INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON FLOW; QUANTIFICATION; RICE FIELD SOILS; STABLE ISOTOPE FRACTIONATION;

BIOLOGICAL MATERIALS; CARBON DIOXIDE; FRACTIONATION; ISOTOPES; OPTIMIZATION; SOILS;

CARBON;

ACETATE; CARBON CYCLE; ISOTOPIC FRACTIONATION; METHANE; METHANOGENESIS; ORGANIC CARBON; PADDY FIELD; SOIL CARBON; SOIL ORGANIC MATTER; STABLE ISOTOPE;

EID: 36148961598     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2007.08.004     Document Type: Article

References (43)

1. Blair N., Leu A., Munoz E., Olsen J., Kwong E., and DesMarais D. Carbon isotopic fractionation in heterotrophic microbial metabolism. Applied Environmental Microbiology 50 (1985) 996-1001
2. Blair N.E., and Carter W.D. The carbon isotope biogeochemistry of acetate from a methanogenic marine sediment. Geochimica et Cosmochimica Acta 56 (1992) 1247-1258
3. Brand W.A. High precision isotope ratio monitoring techniques in mass spectrometry. Journal of Mass Spectrometry 31 (1996) 225-235
4. Breas O., Guillou C., Reniero F., and Wada E. The global methane cycle: isotopes and mixing ratios, sources and sinks. Isotopes in Environmental Health Studies 37 (2001) 257-379
5. Chan O.C., Claus P., Casper P., Ulrich A., Lueders T., and Conrad R. Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment. Environmental Microbiology 7 (2005) 1139-1149
6. 2 methanogenesis. Geochimica et Cosmochimica Acta 66 (2002) 983-995
7. Cicerone R.J., and Oremland R.S. Biogeochemical aspects of atmospheric methane. Global Biogeochemical Cycles 2 (1988) 299-327
8. Conrad R. Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiological Ecology 28 (1999) 193-202
9. Conrad R. Control of microbial methane production in wetland rice fields [Review]. Nutritional Cycling in Agroecosystems 64 (2002) 59-69
10. Conrad R. Quantification of methanogenic pathways using stable carbon isotopic signatures: a review and a proposal. Organic Geochemistry 36 (2005) 739-752
11. Conrad R., and Babbel M. Effect of dilution on methanogenesis, hydrogen turnover and interspecies hydrogen transfer in anoxic paddy soil. FEMS Microbiological Ecology 62 (1989) 21-27
12. Conrad R., and Klose M. Anaerobic conversion of carbon dioxide to methane, acetate and propionate on washed rice roots. FEMS Microbiological Ecology 30 (1999) 147-155
13. Conrad R., and Klose M. How specific is the inhibition by methyl fluoride of acetoclastic methanogenesis in anoxic rice field soil?. FEMS Microbiological Ecology 30 (1999) 47-56
14. 13C-stable isotope fractionation. Chemosphere 47 (2002) 797-806
15. Conrad R., and Wetter B. Influence of temperature on energetics of hydrogen metabolism in homoacetogenic, methanogenic, and other anaerobic bacteria. Archives of Microbiology 155 (1990) 94-98
16. DeGraaf W., Wellsbury P., Parkes R.J., and Cappenberg T.E. Comparison of acetate turnover in methanogenic and sulfate-reducing sediments by radiolabeling and stable isotope labeling and by use of specific inhibitors: evidence for isotopic exchange. Applied Environmental Microbiology 62 (1996) 772-777
17. 13C-isotope signatures and methanogenic pathways in rice field soil incubated anoxically at different temperatures. Geochimica et Cosmochimica Acta 68 (2004) 293-306
18. Gelwicks J.T., Risatti J.B., and Hayes J.M. Carbon isotope effects associated with autotrophic acetogenesis. Organic Geochemistry 14 (1989) 441-446
19. Gelwicks J.T., Risatti J.B., and Hayes J.M. Carbon isotope effects associated with acetoclastic methanogenesis. Applied Environmental Microbiology 60 (1994) 467-472
20. 13C contents of sedimentary organic compounds: principles and evidence. Marine Geology 113 (1993) 111-125
21. Hoehler T.M., Alperin M.J., Albert D.B., and Martens C.S. Apparent minimum free energy requirements for methanogenic Archaea and sulfate-reducing bacteria in an anoxic marine sediment. FEMS Microbiological Ecology 38 (2001) 33-41
22. Holzapfel-Pschorn A., and Seiler W. Methane emission during a cultivation period from an Italian rice paddy. Journal of Geophysical Research 91 (1986) 11803-11814
23. Hori T., Noll M., Igarashi Y., Friedrich M.W., and Conrad R. Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA. Applied Environmental Microbiology 73 (2007) 101-109
24. Janssen P.H., and Frenzel P. Inhibition of methanogenesis by methyl fluoride - studies of pure and defined mixed cultures of anaerobic bacteria and archaea. Applied Environmental Microbiology 63 (1997) 4552-4557
25. Karakashev D., Batstone D.J., Trably E., and Angelidaki I. Acetate oxidation is the dominant methanogenic pathway from acetate in the absence of Methanosaetaceae. Applied Environmental Microbiology 72 (2006) 5138-5141
26. Krummen M., Hilkert A.W., Juchelka D., Duhr A., Schlüter H.J., and Pesch R. A new concept for isotope ratio monitoring liquid chromatography/mass spectrometry. Rapid Communications in Mass Spectrometry 18 (2004) 2260-2266
27. Lelieveld J., Crutzen P.J., and Dentener F.J. Changing concentrations, lifetime and climate forcing of atmospheric methane. Tellus 50B (1998) 128-150
28. Lueders T., and Friedrich M. Archaeal population dynamics during sequential reduction processes in rice field soil. Applied Environmental Microbiology 66 (2000) 2732-2742
29. Lueders T., and Friedrich M.W. Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil. Applied Environmental Microbiology 68 (2002) 2484-2494
30. Mariotti A., Germon J.C., Hubert P., Kaiser P., Letolle R., Tardieux A., and Tardieux P. Experimental determination of nitrogen kinetic isotope fractionation: some principles; illustration for the denitrification and nitrification processes. Plant and Soil 62 (1981) 413-430
31. Nüsslein B., Chin K.J., Eckert W., and Conrad R. Evidence for anaerobic syntrophic acetate oxidation during methane production in the profundal sediment of subtropical Lake Kinneret (Israel). Environmental Microbiology 3 (2001) 460-470
32. O'Leary M.H. Carbon isotope fractionation in plants. Phytochemistry 20 (1981) 553-567
33. Penning H., and Conrad R. Carbon isotope effects associated with mixed.acid fermentation of saccharides by Clostridium papyrosolvens. Geochimica et Cosmochimica Acta 70 (2006) 2283-2297
34. Penning H., Plugge C.M., Galand P.E., and Conrad R. Variation of carbon isotope fractionation in hydrogenotrophic methanogenic microbial cultures and environmental samples at different energy status. Global Change Biology 11 (2005) 2103-2113
35. Penning H., Claus P., Casper P., and Conrad R. Carbon isotope fractionation during acetoclastic methanogenesis by Methanosaeta concillii in culture and a lake sediment. Applied Environmental Microbiology 72 (2006) 5648-5652
36. Penning H., Tyler S.C., and Conrad R. Determination of isotope fractionation factors and quantification of carbon flow by stable carbon isotope signatures in a methanogenic rice root model system. Geobiology 4 (2006) 109-121
37. 2. Geochimica et Cosmochimica Acta 57 (1993) 4015-4027
38. Thebrath B., Mayer H.P., and Conrad R. Bicarbonate-dependent production and methanogenic consumption of acetate in anoxic paddy soil. FEMS Microbiological Ecology 86 (1992) 295-302
39. Valentine D.L., Chidthaisong A., Rice A., Reeburgh W.S., and Tyler S.C. Carbon and hydrogen isotope fractionation by moderately thermophilic methanogens. Geochimica et Cosmochimica Acta 68 (2004) 1571-1590
40. Valentine N., Wunschel S., Wunschel D., Petersen C., and Wahl K. Effect of culture conditions on microorganism identification by matrix-assisted laser desorption ionization mass spectrometry. Applied Environmental Microbiology 71 (2005) 58-64
41. Weimer P.J., and Zeikus J.G. Acetate metabolism in Methanosarcina barkeri. Archives of Microbiology 119 (1978) 175-182
42. 2 reduction vs. acetate fermentation - isotopic evidence. Geochimica et Cosmochimica Acta 50 (1986) 693-709
43. 2 in anoxic rice soil. European Journal of Soil Science 51 (2000) 369-378