Identification of West Eurasian mitochondrial haplogroups by mtDNA SNP screening: Results of the 2006-2007 EDNAP collaborative exercise

Forensic Science International: Genetics

Volumn 2, Issue 1, 2008, Pages 61-68

  Parson, Walther ^a   Fendt, Liane ^a   Ballard, David ^b   Børsting, Claus ^c   Brinkmann, Bernd ^d   Carracedo, Ángel ^e   Carvalho, Mónica ^f   Coble, Michael D ^g   Real, Francisco Corte ^f   Desmyter, Stijn ^h   Dupuy, Berit M ⁱ   Harrison, Cheryl ^b   Hohoff, Carsten ^d   Just, Rebecca ^g   Krämer, Tanja ^j   Morling, Niels ^c   Salas, Antonio ^e   Schmitter, Hermann ^k   Schneider, Peter M ^j   Sonntag, Marie Luise ^k   Vallone, Peter M ^l   Brandstätter, Anita ^a   more..

^a INNSBRUCK MEDICAL UNIVERSITY   (Austria)

^b ICMS   (United Kingdom)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

^d UNIVERSITY HOSPITAL MÜNSTER   (Germany)

^e UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^f INSTITUTO NACIONAL DE MEDICINA LEGAL E CIÊNCIAS FORENSES   (Portugal)

^g Armed Forces DNA Identification Laboratory   (United States)

^h Institute of Criminalistics   (Belgium)

ⁱ Institute of Legal Medicine   (Norway)

^j UNIVERSITY OF COLOGNE   (Germany)

^k Bundeskriminalamt   (Germany)

^l NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

more..

Author keywords

Coding region SNPs; Forensic identification; Mitochondrial DNA; Multiplex; SNaPshot

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; ASIA; CONTROLLED STUDY; DNA DETERMINATION; EUROPE; FORENSIC IDENTIFICATION; FORENSIC MEDICINE; GENETIC SCREENING; HAIR ANALYSIS; HUMAN; HUMAN CELL; INTERNATIONAL COOPERATION; MULTIPLEX POLYMERASE CHAIN REACTION; NORMAL HUMAN; PRIORITY JOURNAL; REPRODUCIBILITY; SALIVA ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; VOLUNTEER;

CHI-SQUARE DISTRIBUTION; DNA FINGERPRINTING; DNA, MITOCHONDRIAL; EUROPEAN CONTINENTAL ANCESTRY GROUP; FORENSIC MEDICINE; GENETIC MARKERS; GENETICS, POPULATION; HAIR; HAPLOTYPES; HUMANS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SALIVA;

EID: 36049031840     PISSN: 18724973     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fsigen.2007.08.007     Document Type: Article

References (15)

1. Brandstätter A., Parsons T.J., and Parson W. Rapid screening of mtDNA coding region SNPs for the identification of west European Caucasian haplogroups. Int. J. Legal Med. 117 (2003) 291-298
2. Quintáns B., Álvarez-Iglesias V., Salas A., Phillips C., Lareu M.-V., and Carracedo A. Typing of mitochondrial DNA coding region SNPs of forensic and anthropological interest using SNaPshot minisequencing. Forensic Sci. Int. 140 (2004) 251-257
3. Coble M.D., Just R.S., O'Callaghan J.E., Letmanyi I.H., Peterson C.T., Irwin J.A., and Parsons T.J. Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians. Int. J. Legal Med. 118 (2004) 137-146
4. Umetsu K., Tanaka M., Yuasa I., Adachi N., Miyoshi A., Kashimura S., Park K.S., Wei Y.H., Watanabe G., and Osawa M. Multiplex amplified product-length polymorphism analysis of 36 mitochondrial single-nucleotide polymorphisms for haplogrouping of East Asian populations. Electrophoresis 26 (2005) 91-98
5. Lee H.Y., Yoo J.E., Park M.J., Chung U., and Shin K.J. Mitochondrial DNA control region sequences in Koreans: identification of useful variable sites and phylogenetic analysis for mtDNA data quality control. Int. J. Legal Med. 120 (2006) 5-14
6. Alvarez-Iglesias V., Jaime J.C., Carracedo A., and Salas A. Coding region mitochondrial SNPs: targeting East Asian and native American haplogroups. Forensic Sci. Int. Genet. 1 (2007) 44-55
7. Vallone P.M., Just R.S., Coble M.D., Butler J.M., and Parsons T.J. A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome. Int. J. Legal Med. 118 (2004) 147-157
8. Grignani P., Peloso G., Achilli A., Turchi C., Tagliabracci A., Alu M., Beduschi G., Ricci U., Giunti L., Robino C., Gino S., and Previdere C. Subtyping mtDNA haplogroup H by SNaPshot minisequencing and its application in forensic individual identification. Int. J. Legal Med. 120 (2006) 151-156
9. Pereira L., Richards M., Goios A., Alonso A., Albarran C., Garcia O., Behar D.M., Golge M., Hatina J., Al Gazali L., Bradley D.G., Macaulay V., and Amorim A. Evaluating the forensic informativeness of mtDNA haplogroup H sub-typing on a Eurasian scale. Forensic Sci. Int. 159 (2006) 43-50
10. Brandstätter A., Salas A., Niederstätter H., Gassner C., Carracedo A., and Parson W. Dissection of mitochondrial superhaplogroup H using coding region SNPs. Electrophoresis 27 (2006) 2541-2550
11. Andreasson H., Nilsson M., Styrman H., Pettersson U., and Allen M. Forensic mitochondrial coding region analysis for increased discrimination using pyrosequencing technology. Forensic Sci. Int. Genet. 1 (2007) 35-43
12. Oberacher H., Niederstatter H., Pitterl F., and Parson W. Profiling 627 mitochondrial nucleotides via the analysis of a 23-plex polymerase chain reaction by liquid chromatography-electrospray ionization time-of-flight mass spectrometry. Anal. Chem. 78 (2006) 7816-7827
13. Reidla M., Kivisild T., Metspalu E., Kaldma K., Tambets K., Tolk H.V., Parik J., Loogväli E.-L., Derenko M.V., Malyarchuk B., Bermisheva M., Zhadanov S., Pennarun E., Gubina M., Golubenko M., Damba L., Fedorova S., Gusar V., Grechanina E., Mikerezi I., Moisan J.P., Chaventre A., Khusnutdinova E., Osipova L., Stepanov V., Voevoda M., Achilli A., Rengo C., Rickards O., De Stefano G.F., Papiha S., Beckman L., Janicijevic B., Rudan P., Anagnou N., Michalodimitrakis E., Koziel S., Usanga E., Geberhiwot T., Herrnstadt C., Howell N., Torroni A., and Villems R. Origin and diffusion of mtDNA haplogroup X. Am. J. Hum. Genet. 73 (2003) 1178-1190
14. Palanichamy M.G., Sun C., Agrawal S., Bandelt H.J., Kong Q.P., Khan F., Wang C.Y., Chaudhuri T.K., Palla V., and Zhang Y.P. Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. Am. J. Hum. Genet. 75 (2004) 966-978
15. Parson W., Brandstätter A., Alonso A., Brandt N., Brinkmann B., Carracedo A., Corach D., Froment O., Furaç I., Grzybowski T., Hedberg K., Keyser-Tracqui C., Kupiec T., Lutz-Bonengel S., Mevag B., Ploski R., Schmitter H., Schneider P., Syndercombe-Court E., Sorensen H., Thew G., Tully R., and Scheithauer. The EDNAP mitochondrial DNA population database (EMPOP) collaborative exercises: organisation, results and perspectives. Forensic Sci. Int. 139 (2004) 215-226